Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002126.1

Orthogroup ID

OG0006893

Physical Location & Seq

Genomic Coordinates Reverse (-)

1473 .. 2774

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002126.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atgggtgataacaattctccacctggctcttctaaagaagctgatcatgattccgatgctaacgcgcttgttaaggatgatagctcattggaaacgattgttcgaaagttccaagattcaatgtctgttgggaagaggcacgcattttgggagacccagcctgtggggcagttcaaggatcttggtgatgtgagtctgccggagggcccgattgagcctcccacaccattgtctgaggtcaagcaagagccgtacaatctgcccagtcagtatgagtggaccacttgtgatttggactcggaagacacctgcactgaggtctacaatctgttgaagaacaattatgttgaggatgatgagaacatgttcaggttcaattactccaaggagtttcttaggtgggctttgcaccctcctggttattataggagctggcatattggggttcgtgcaaagacgaataagaagctggttgctttcattactggtgtccctgctagaatccgggttcgtgatgtgattgtgaaaatggcagagattaatttcttatgtgtgcataagaagctcaggtcgaagagacttgctcctgtcatgatcaaggaggtcacaaggagggttcacttggagaatatctggcaagcagcttatacagctggagtggttctcccaactccaataacaacttgtcagtactggcataggtctttgaatccaaagaagcttattgatgttgggttttcaaggcttggtgcaaggatgactatgagccgaaccataaagctatataagttaccagattcaccagctactcctggattcagaaagatggaacttcatgatgtccctgctgttactcgattgctcagaaactacttgagccagttcattgttgcaccagattttgatgaaaatgatgtggagcattggcttctccccgaggaaaatgtggtggacagttacttggtggagagcccagagactcatgagatcacagacttctgcagcttctatactcttccttcatctatccttggcaatcagaattactcaatcttgaaggctgcttactcatattacaatgtctccactaaaactccattgcttcagttgatgaatgatgctcttatcgtggcaaaacagaaggattttgatgttttcaacgcattggatgtaatgcagaatgagtcatttttgaaagaactgaaatttggacctggcgatgggcaacttcactattatctttacaattaccggatgaggaatgcattgaaacctgcagagcttgggcttgtactgctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004379 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009987 GO:0010016 GO:0010064 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018008 GO:0018193 GO:0018201 GO:0018377 GO:0019107 GO:0019538 GO:0031365 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048598 GO:0048731 GO:0048856 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

NMT NMT_C

Protein Analysis

433

Amino Acids

49.71

Weight (kDa)

6.16

Isoelectric Point (pI)

49.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006893)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57020
fragaria_vesca	FvH4_1g07930
malus_domestica	MD02G1082900.v1.1 MD15G1211000.v1.1
prunus_persica	Prupe.3G045400_v2.0.a1 Prupe.7G205800_v2.0.a1 Prupe.7G205800_v2.0.a1
pyrus_communis	pycom02g06580 pycom15g18700
rosa_chinensis	RchiOBHm_Chr2g0093811 RchiOBHm_Chr2g0144431
rosa_laevigata	RLG00000016438 RLG00000020080
rosa_multiflora	Rmu_sc0002126.1_g000002
rosa_roxburghii	Rroxscaffold_2G00101320
rosa_rugosa	Rorug02G0040100 Rorug02G0386500
rosa_samantha	Rh2AG086600 Rh2AG438800 Rh2BG086900 Rh2BG449100 Rh2CG089300 Rh2CG426000 Rh2DG085100 Rh2DG459000
rosa_wichuraiana	Rw2G035900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	317
Acc36I	ACCTGC	2 cut(s)	317, 1282
AccB7I	CCANNNNNTGG	1 cut(s)	163
AccI	GTMKAC	1 cut(s)	321
AccII	CGCG	1 cut(s)	65
AclWI	GGATC	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	1205
AcuI	CTGAAG	1 cut(s)	1088
AfaI	GTAC	3 cut(s)	254, 692, 1293
AfiI	CCNNNNNNNGG	2 cut(s)	163, 1220
AflIII	ACRYGT	1 cut(s)	363
AjnI	CCWGG	4 cut(s)	22, 415, 811, 1213
AjuI	GAANNNNNNNTTGG	2 cut(s)	1191, 1223
Alw26I	GTCTC	4 cut(s)	146, 571, 971, 1087
AlwI	GGATC	1 cut(s)	186
Ama87I	CYCGRG	1 cut(s)	935
AoxI	GGCC	1 cut(s)	205
ApaI	GGGCCC	1 cut(s)	209
ApeKI	GCWGC	3 cut(s)	641, 1002, 1061
ApoI	RAATTY	1 cut(s)	1205
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	4 cut(s)	205, 206, 279, 1211
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	3 cut(s)	17, 197, 792
AsuII	TTCGAA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	935
AvaII	GGWCC	2 cut(s)	279, 1211
BaeGI	GKGCMC	1 cut(s)	209
BanII	GRGCYC	2 cut(s)	209, 974
BarI	GAAGNNNNNNTAC	2 cut(s)	1049, 1081
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	3 cut(s)	653, 1014, 1048
BccI	CCATC	2 cut(s)	820, 1214
BceAI	ACGGC	1 cut(s)	235
BciT130I	CCWGG	4 cut(s)	24, 417, 813, 1215
BclI	TGATCA	2 cut(s)	43, 594
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	4 cut(s)	146, 571, 971, 1087
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	3 cut(s)	1000, 1275, 1298
BfuAI	ACCTGC	2 cut(s)	317, 1282
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	3 cut(s)	642, 1003, 1062
BlsI	GCNGC	3 cut(s)	643, 1004, 1063
BmcAI	AGTACT	1 cut(s)	692
Bme1390I	CCNGG	5 cut(s)	24, 417, 506, 813, 1215
Bme18I	GGWCC	2 cut(s)	279, 1211
BmeT110I	CYCGRG	1 cut(s)	935
BmgT120I	GGNCC	4 cut(s)	205, 206, 279, 1211
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	5 cut(s)	24, 417, 506, 813, 1215
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	46, 1108
BmuI	ACTGGG	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	309
BplI	GAGNNNNNCTC	4 cut(s)	568, 600, 648, 680
BpmI	CTGGAG	1 cut(s)	675
Bpu10I	CCTNAGC	1 cut(s)	566
Bpu14I	TTCGAA	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	895
BpuMI	CCSGG	1 cut(s)	506
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	3 cut(s)	384, 936, 1030
BsaWI	WCCGGW	1 cut(s)	1251
BsaXI	ACNNNNNCTCC	4 cut(s)	1067, 1078, 1097, 1108
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 1220
Bse1I	ACTGG	4 cut(s)	264, 490, 698, 880
Bse3DI	GCAATG	1 cut(s)	1097
BseBI	CCWGG	4 cut(s)	24, 417, 813, 1215
BseDI	CCNNGG	3 cut(s)	384, 936, 1030
BseGI	GGATG	5 cut(s)	82, 358, 762, 1174, 1260
BseLI	CCNNNNNNNGG	2 cut(s)	163, 1220
BseMI	GCAATG	1 cut(s)	1097
BseMII	CTCAG	4 cut(s)	225, 306, 580, 877
BseNI	ACTGG	4 cut(s)	264, 490, 698, 880
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	3 cut(s)	653, 1014, 1048
BseYI	CCCAGC	1 cut(s)	156
BsgI	GTGCAG	1 cut(s)	295
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	935
BsiSI	CCGG	3 cut(s)	200, 505, 1252
BslFI	GGGAC	2 cut(s)	476, 827
BslI	CCNNNNNNNGG	2 cut(s)	163, 1220
BsmAI	GTCTC	4 cut(s)	146, 571, 971, 1087
BsmFI	GGGAC	2 cut(s)	476, 827
BsmI	GAATGC	1 cut(s)	1267
BsnI	GGCC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	935
Bsp119I	TTCGAA	1 cut(s)	103
Bsp120I	GGGCCC	1 cut(s)	205
Bsp1286I	GDGCHC	2 cut(s)	209, 974
Bsp143I	GATC	4 cut(s)	43, 178, 594, 987
BspANI	GGCC	1 cut(s)	207
BspCNI	CTCAG	4 cut(s)	226, 307, 579, 876
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	4 cut(s)	46, 591, 835, 982
BspLI	GGNNCC	1 cut(s)	207
BspMAI	CTGCAG	2 cut(s)	1004, 1279
BspMI	ACCTGC	2 cut(s)	317, 1282
BspPI	GGATC	1 cut(s)	186
BspQI	GCTCTTC	1 cut(s)	34
BspT104I	TTCGAA	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	1097
BsrI	ACTGG	4 cut(s)	264, 490, 698, 880
BssECI	CCNNGG	3 cut(s)	384, 936, 1030
BssMI	GATC	4 cut(s)	43, 178, 594, 987
BssT1I	CCWWGG	2 cut(s)	384, 1030
Bst2UI	CCWGG	4 cut(s)	24, 417, 813, 1215
Bst4CI	ACNGT	1 cut(s)	956
Bst6I	CTCTTC	4 cut(s)	34, 128, 569, 1020
BstBI	TTCGAA	1 cut(s)	103
BstC8I	GCNNGC	3 cut(s)	141, 434, 639
BstDEI	CTNAG	5 cut(s)	234, 315, 395, 566, 863
BstF5I	GGATG	5 cut(s)	82, 358, 762, 1174, 1260
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	4 cut(s)	46, 181, 597, 990
BstMAI	GTCTC	4 cut(s)	146, 571, 971, 1087
BstMBI	GATC	4 cut(s)	43, 178, 594, 987
BstMWI	GCNNNNNNNGC	4 cut(s)	166, 562, 650, 1294
BstNI	CCWGG	4 cut(s)	24, 417, 813, 1215
BstNSI	RCATGY	1 cut(s)	367
BstSCI	CCNGG	5 cut(s)	22, 415, 504, 811, 1213
BstSFI	CTRYAG	3 cut(s)	1000, 1275, 1298
BstSLI	GKGCMC	1 cut(s)	209
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	3 cut(s)	653, 1014, 1048
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	178
BstYI	RGATCY	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	207
BtgZI	GCGATG	1 cut(s)	1233
BtsCI	GGATG	5 cut(s)	82, 358, 762, 1174, 1260
BtsIMutI	CAGTG	1 cut(s)	312
BveI	ACCTGC	2 cut(s)	317, 1282
Cac8I	GCNNGC	3 cut(s)	141, 434, 639
CciI	TCATGA	4 cut(s)	46, 591, 835, 982
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	4 cut(s)	205, 206, 279, 1211
Csp6I	GTAC	3 cut(s)	253, 691, 1292
CviAII	CATG	5 cut(s)	47, 364, 592, 836, 983
CviQI	GTAC	3 cut(s)	253, 691, 1292
DdeI	CTNAG	5 cut(s)	234, 315, 395, 566, 863
DpnI	GATC	4 cut(s)	45, 180, 596, 989
DpnII	GATC	4 cut(s)	43, 178, 594, 987
Eam1104I	CTCTTC	4 cut(s)	34, 128, 569, 1020
EarI	CTCTTC	4 cut(s)	34, 128, 569, 1020
Eco130I	CCWWGG	2 cut(s)	384, 1030
Eco24I	GRGCYC	2 cut(s)	209, 974
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	2 cut(s)	279, 1211
Eco57I	CTGAAG	1 cut(s)	1088
Eco88I	CYCGRG	1 cut(s)	935
EcoO109I	RGGNCCY	1 cut(s)	205
EcoRII	CCWGG	4 cut(s)	22, 415, 811, 1213
EcoT14I	CCWWGG	2 cut(s)	384, 1030
EcoT22I	ATGCAT	1 cut(s)	1267
EcoT38I	GRGCYC	2 cut(s)	209, 974
ErhI	CCWWGG	2 cut(s)	384, 1030
FaeI	CATG	5 cut(s)	50, 367, 595, 839, 986
FaqI	GGGAC	2 cut(s)	476, 827
FatI	CATG	5 cut(s)	46, 363, 591, 835, 982
FbaI	TGATCA	2 cut(s)	43, 594
FblI	GTMKAC	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	642, 1003, 1062
FokI	GGATG	5 cut(s)	89, 365, 769, 1181, 1267
FriOI	GRGCYC	2 cut(s)	209, 974
Fsp4HI	GCNGC	3 cut(s)	642, 1003, 1062
FspBI	CTAG	1 cut(s)	498
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	3 cut(s)	642, 1003, 1062
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	675
HaeIII	GGCC	1 cut(s)	207
HapII	CCGG	3 cut(s)	200, 505, 1252
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	5 cut(s)	50, 367, 595, 839, 986
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HindIII	AAGCTT	1 cut(s)	719
HpaII	CCGG	3 cut(s)	200, 505, 1252
HphI	GGTGA	3 cut(s)	17, 197, 792
Hpy166II	GTNNAC	4 cut(s)	279, 322, 619, 952
Hpy188I	TCNGA	6 cut(s)	55, 235, 301, 821, 866, 1041
Hpy188III	TCNNGA	6 cut(s)	47, 512, 592, 836, 983, 1054
Hpy8I	GTNNAC	4 cut(s)	279, 322, 619, 952
HpyAV	CCTTC	3 cut(s)	1029, 1051, 1135
HpyCH4III	ACNGT	1 cut(s)	956
HpyF10VI	GCNNNNNNNGC	4 cut(s)	166, 562, 650, 1294
HpyF3I	CTNAG	5 cut(s)	234, 315, 395, 566, 863
Hsp92II	CATG	5 cut(s)	50, 367, 595, 839, 986
HspAI	GCGC	1 cut(s)	65
Ksp22I	TGATCA	2 cut(s)	43, 594
Kzo9I	GATC	4 cut(s)	43, 178, 594, 987
LguI	GCTCTTC	1 cut(s)	34
LmnI	GCTCC	3 cut(s)	429, 589, 919
Lsp1109I	GCAGC	3 cut(s)	653, 1014, 1048
LweI	GCATC	2 cut(s)	46, 1108
MaeI	CTAG	1 cut(s)	498
MaeIII	GTNAC	4 cut(s)	604, 789, 850, 956
MalI	GATC	4 cut(s)	45, 180, 596, 989
MboI	GATC	4 cut(s)	43, 178, 594, 987
MboII	GAAGA	6 cut(s)	21, 145, 314, 346, 586, 1007
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	2 cut(s)	209, 974
MluCI	AATT	7 cut(s)	13, 340, 376, 541, 1042, 1205, 1246
MlyI	GAGTC	4 cut(s)	202, 290, 973, 1193
Mph1103I	ATGCAT	1 cut(s)	1267
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	2 cut(s)	72, 540
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	3 cut(s)	200, 505, 1252
MspR9I	CCNGG	5 cut(s)	24, 417, 506, 813, 1215
Mva1269I	GAATGC	1 cut(s)	1267
MvaI	CCWGG	4 cut(s)	24, 417, 813, 1215
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	166, 562, 650, 1294
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	4 cut(s)	43, 178, 594, 987
NlaIII	CATG	5 cut(s)	50, 367, 595, 839, 986
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	604
NsiI	ATGCAT	1 cut(s)	1267
NspI	RCATGY	1 cut(s)	367
NspV	TTCGAA	1 cut(s)	103
PagI	TCATGA	4 cut(s)	46, 591, 835, 982
PaqCI	CACCTGC	1 cut(s)	317
PciI	ACATGT	1 cut(s)	363
PciSI	GCTCTTC	1 cut(s)	34
PctI	GAATGC	1 cut(s)	1267
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	6 cut(s)	50, 116, 501, 709, 797, 816
PflMI	CCANNNNNTGG	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	811
PkrI	GCNGC	3 cut(s)	643, 1004, 1063
PleI	GAGTC	4 cut(s)	201, 290, 973, 1192
PpsI	GAGTC	4 cut(s)	201, 290, 973, 1192
PscI	ACATGT	1 cut(s)	363
PshBI	ATTAAT	1 cut(s)	540
Psp6I	CCWGG	4 cut(s)	22, 415, 811, 1213
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	4 cut(s)	22, 415, 811, 1213
PspN4I	GGNNCC	1 cut(s)	207
PspOMI	GGGCCC	1 cut(s)	205
PspPI	GGNCC	4 cut(s)	205, 206, 279, 1211
PstI	CTGCAG	2 cut(s)	1004, 1279
PsuI	RGATCY	1 cut(s)	178
PvuII	CAGCTG	1 cut(s)	653
RsaI	GTAC	3 cut(s)	254, 692, 1293
RsaNI	GTAC	3 cut(s)	253, 691, 1292
SapI	GCTCTTC	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	72, 540
SatI	GCNGC	3 cut(s)	642, 1003, 1062
Sau3AI	GATC	4 cut(s)	43, 178, 594, 987
Sau96I	GGNCC	4 cut(s)	205, 206, 279, 1211
ScaI	AGTACT	1 cut(s)	692
SchI	GAGTC	4 cut(s)	202, 290, 973, 1193
ScrFI	CCNGG	5 cut(s)	24, 417, 506, 813, 1215
SduI	GDGCHC	2 cut(s)	209, 974
SfaNI	GCATC	2 cut(s)	46, 1108
SfcI	CTRYAG	3 cut(s)	1000, 1275, 1298
SfuI	TTCGAA	1 cut(s)	103
SinI	GGWCC	2 cut(s)	279, 1211
SmlI	CTYRAG	1 cut(s)	874
SmoI	CTYRAG	1 cut(s)	874
Sse9I	AATT	7 cut(s)	13, 340, 376, 541, 1042, 1205, 1246
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	5 cut(s)	22, 415, 504, 811, 1213
StyI	CCWWGG	2 cut(s)	384, 1030
TaaI	ACNGT	1 cut(s)	956
TaqI	TCGA	3 cut(s)	103, 572, 856
TasI	AATT	7 cut(s)	13, 340, 376, 541, 1042, 1205, 1246
TatI	WGTACW	2 cut(s)	690, 1291
TfiI	GAWTC	6 cut(s)	50, 116, 501, 709, 797, 816
Tru1I	TTAA	2 cut(s)	72, 540
Tru9I	TTAA	2 cut(s)	72, 540
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	3 cut(s)	641, 1002, 1061
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	6 cut(s)	469, 824, 874, 921, 1011, 1127
TspRI	CASTG	1 cut(s)	319
Van91I	CCANNNNNTGG	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	279, 1211
VspI	ATTAAT	1 cut(s)	540
XapI	RAATTY	1 cut(s)	1205
XceI	RCATGY	1 cut(s)	367
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	321
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	1 cut(s)	498
ZrmI	AGTACT	1 cut(s)	692
Zsp2I	ATGCAT	1 cut(s)	1267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.