Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017206

Physical Location & Seq

Genomic Coordinates Reverse (-)

23874311 .. 23875713

Gene Structure 1403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G59140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGAGAGAGACGGTGAAGTTGATAAGCATGGAAGGTTTCGAGTTCGTCATCGACAGAGAAGCCGCTATGGTTTCTCAGACTATCCGAAGCATGCTCACTTCTCCAGGTGGTTTCTCGGAATCGAAAGATGGCGTAGTGACTTTCCCTGATATAAGCACCACAATACTAGAGAAGATTTGCCAGTACTTCTACTGGTCTCTTCAATACTCCAGAGGCAAAGAGACAGAGTTTCATATTGAGCCTGAACTGACTCTAGAGCTGATGATGGCTGCTAACTATCTTCACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0008023 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030891 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0070449 GO:0080090 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04066 ko04120 ko05200 ko05211 map04066 map04120 map05200 map05211

Pfam Domains

Protein Families

Skp1_POZ

Protein Analysis

96

Amino Acids

11.05

Weight (kDa)

4.77

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	4 - 64	3.8e-08	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59140
fragaria_vesca	FvH4_3g37160
malus_domestica	MD03G1084600.v1.1 MD11G1092100.v1.1
prunus_persica	Prupe.6G067900_v2.0.a1
pyrus_communis	pycom03g06680 pycom11g07740
rosa_chinensis	RchiOBHm_Chr5g0066881
rosa_multiflora	Rmu_sc0000605.1_g000059
rosa_roxburghii	Rroxscaffold_1G00014240
rosa_rugosa	Rorug05G0379200
rosa_samantha	Rh5CG477900
rosa_wichuraiana	Rw5G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	63
AfaI	GTAC	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw26I	GTCTC	3 cut(s)	2, 201, 215
ApeKI	GCWGC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	256
BccI	CCATC	2 cut(s)	122, 259
BciT130I	CCWGG	1 cut(s)	105
BcoDI	GTCTC	3 cut(s)	2, 201, 215
BfaI	CTAG	2 cut(s)	167, 254
BisI	GCNGC	2 cut(s)	63, 270
BlsI	GCNGC	2 cut(s)	64, 271
BmcAI	AGTACT	1 cut(s)	185
Bme1390I	CCNGG	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	105
BpmI	CTGGAG	2 cut(s)	87, 193
BsaI	GGTCTC	1 cut(s)	201
Bse1I	ACTGG	2 cut(s)	181, 197
BseBI	CCWGG	1 cut(s)	105
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	181, 197
BseXI	GCAGC	1 cut(s)	256
BsmAI	GTCTC	3 cut(s)	2, 201, 215
BsmBI	CGTCTC	1 cut(s)	2
Bso31I	GGTCTC	1 cut(s)	201
BspACI	CCGC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	88
BspTNI	GGTCTC	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	181, 197
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	92
BstDEI	CTNAG	1 cut(s)	75
BstMAI	GTCTC	3 cut(s)	2, 201, 215
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	103
BstV1I	GCAGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	184
CviAII	CATG	2 cut(s)	28, 91
CviJI	RGCY	4 cut(s)	62, 241, 259, 269
CviKI_1	RGCY	4 cut(s)	62, 241, 259, 269
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	75
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	2 cut(s)	31, 94
FaiI	YATR	5 cut(s)	29, 68, 92, 152, 234
FatI	CATG	2 cut(s)	27, 90
Fnu4HI	GCNGC	2 cut(s)	63, 270
Fsp4HI	GCNGC	2 cut(s)	63, 270
FspBI	CTAG	2 cut(s)	167, 254
GluI	GCNGC	2 cut(s)	63, 270
GsuI	CTGGAG	2 cut(s)	87, 193
Hin1II	CATG	2 cut(s)	31, 94
HinfI	GANTC	2 cut(s)	119, 250
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	78, 86, 118
Hpy188III	TCNNGA	2 cut(s)	210, 254
HpyAV	CCTTC	1 cut(s)	26
HpyCH4III	ACNGT	1 cut(s)	13
HpyF3I	CTNAG	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	31, 94
LpnPI	CCDG	7 cut(s)	90, 117, 159, 178, 194, 223, 255
Lsp1109I	GCAGC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	167, 254
MaeIII	GTNAC	1 cut(s)	136
MboII	GAAGA	3 cut(s)	184, 191, 272
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	105
NlaIII	CATG	2 cut(s)	31, 94
NmuCI	GTSAC	1 cut(s)	136
NspI	RCATGY	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	2 cut(s)	64, 271
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	1 cut(s)	103
PspGI	CCWGG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SatI	GCNGC	2 cut(s)	63, 270
ScaI	AGTACT	1 cut(s)	185
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	105
SetI	ASST	3 cut(s)	37, 109, 261
SphI	GCATGC	1 cut(s)	94
SsiI	CCGC	1 cut(s)	63
SspMI	CTAG	2 cut(s)	167, 254
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	3 cut(s)	39, 51, 122
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	119
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	1 cut(s)	221
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	1 cut(s)	94
XspI	CTAG	2 cut(s)	167, 254
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.