Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0017206

Physical Location & Seq

Genomic Coordinates Reverse (-)

6819482 .. 6821319

Gene Structure 1838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1084600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAGAAGGAAGACACAGTGAAGCTGATCAGCGCCGAGGGGTTCGAGTTCGTGATCCACAAAGACGCCGCCATGGTCTCTCAGACCATCCGCAACATGCTCACTTCTCCAGGGAGTTTTTCTGAAACGGAGCACGGCGAGGTGACGTTCCCGGAGATCAGCACCACCATTCTTGAGAAGATCTGCAAGTACTTTTACTGGAACCTTCAATATGCCAGCGGGAAGCAGACCGAGTTTCCTATTGAACCTGAATTGGTTCTGGAGTTGATGATGGCAGCCAATTATCTCCATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000153 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0008023 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030891 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0070449 GO:0080090 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04066 ko04120 ko05200 ko05211 map04066 map04120 map05200 map05211

Pfam Domains

Protein Families

Skp1_POZ

Protein Analysis

99

Amino Acids

11.23

Weight (kDa)

4.93

Isoelectric Point (pI)

51.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 67	5.2e-08	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017206)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59140
fragaria_vesca	FvH4_3g37160
malus_domestica	MD03G1084600.v1.1 MD11G1092100.v1.1
prunus_persica	Prupe.6G067900_v2.0.a1
pyrus_communis	pycom03g06680 pycom11g07740
rosa_chinensis	RchiOBHm_Chr5g0066881
rosa_multiflora	Rmu_sc0000605.1_g000059
rosa_roxburghii	Rroxscaffold_1G00014240
rosa_rugosa	Rorug05G0379200
rosa_samantha	Rh5CG477900
rosa_wichuraiana	Rw5G041050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	69, 91, 219
AclWI	GGATC	1 cut(s)	49
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	191
AgsI	TTSAA	2 cut(s)	209, 245
AjnI	CCWGG	1 cut(s)	109
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	82
AlwI	GGATC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	35
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	2 cut(s)	95, 265
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	111
BclI	TGATCA	1 cut(s)	27
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	82
BfoI	RGCGCY	1 cut(s)	36
BglII	AGATCT	1 cut(s)	180
BisI	GCNGC	2 cut(s)	69, 276
BlsI	GCNGC	2 cut(s)	70, 277
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	111, 152
BmiI	GGNNCC	1 cut(s)	203
BmrFI	CCNGG	2 cut(s)	111, 152
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	2 cut(s)	93, 281
BpuEI	CTTGAG	1 cut(s)	194
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	82
BsaJI	CCNNGG	3 cut(s)	36, 72, 110
Bse1I	ACTGG	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	36, 72, 110
BseGI	GGATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	203
BseXI	GCAGC	1 cut(s)	287
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	82
Bso31I	GGTCTC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp143I	GATC	4 cut(s)	27, 54, 156, 180
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	3 cut(s)	69, 91, 219
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	82
BsrI	ACTGG	1 cut(s)	203
BssECI	CCNNGG	3 cut(s)	36, 72, 110
BssMI	GATC	4 cut(s)	27, 54, 156, 180
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	19
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	81
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	4 cut(s)	30, 57, 159, 183
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	4 cut(s)	27, 54, 156, 180
BstNI	CCWGG	1 cut(s)	111
BstNSI	RCATGY	1 cut(s)	100
BstSCI	CCNGG	2 cut(s)	109, 150
BstV1I	GCAGC	1 cut(s)	287
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	24
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	35
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	190
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	3 cut(s)	73, 97, 294
CviJI	RGCY	2 cut(s)	25, 278
CviKI_1	RGCY	2 cut(s)	25, 278
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	4 cut(s)	29, 56, 158, 182
DpnII	GATC	4 cut(s)	27, 54, 156, 180
Eco130I	CCWWGG	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	76, 100, 297
FaiI	YATR	5 cut(s)	74, 98, 213, 291, 295
FatI	CATG	3 cut(s)	72, 96, 293
FauI	CCCGC	1 cut(s)	212
FbaI	TGATCA	1 cut(s)	27
Fnu4HI	GCNGC	2 cut(s)	69, 276
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	2 cut(s)	69, 276
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	69, 276
GsuI	CTGGAG	2 cut(s)	93, 281
HaeII	RGCGCY	1 cut(s)	36
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	35
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	76, 100, 297
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	154
Hpy188I	TCNGA	2 cut(s)	84, 124
Hpy188III	TCNNGA	3 cut(s)	52, 173, 260
HpyAV	CCTTC	1 cut(s)	215
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	1 cut(s)	186
HpyF3I	CTNAG	1 cut(s)	81
HpySE526I	ACGT	1 cut(s)	146
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	76, 100, 297
HspAI	GCGC	1 cut(s)	33
Ksp22I	TGATCA	1 cut(s)	27
Kzo9I	GATC	4 cut(s)	27, 54, 156, 180
LmnI	GCTCC	1 cut(s)	130
LpnPI	CCDG	7 cut(s)	96, 123, 165, 184, 229, 245, 261
Lsp1109I	GCAGC	1 cut(s)	287
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	4 cut(s)	29, 56, 158, 182
MboI	GATC	4 cut(s)	27, 54, 156, 180
MboII	GAAGA	3 cut(s)	16, 23, 190
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	2 cut(s)	251, 280
MnlI	CCTC	2 cut(s)	31, 133
MroXI	GAANNNNTTC	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	2 cut(s)	111, 152
MvaI	CCWGG	1 cut(s)	111
NciI	CCSGG	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	4 cut(s)	27, 54, 156, 180
NlaIII	CATG	3 cut(s)	76, 100, 297
NlaIV	GGNNCC	1 cut(s)	203
NmeAIII	GCCGAG	1 cut(s)	61
NmuCI	GTSAC	1 cut(s)	142
NspI	RCATGY	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	255
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	2 cut(s)	70, 277
Psp6I	CCWGG	1 cut(s)	109
PspGI	CCWGG	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SatI	GCNGC	2 cut(s)	69, 276
Sau3AI	GATC	4 cut(s)	27, 54, 156, 180
ScaI	AGTACT	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	111, 152
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	5 cut(s)	27, 144, 149, 207, 250
SmlI	CTYRAG	1 cut(s)	173
SmoI	CTYRAG	1 cut(s)	173
Sse9I	AATT	2 cut(s)	251, 280
SsiI	CCGC	3 cut(s)	69, 91, 219
StyD4I	CCNGG	2 cut(s)	109, 150
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	45
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	2 cut(s)	251, 280
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	71
TscAI	CASTG	1 cut(s)	24
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	24
XceI	RCATGY	1 cut(s)	100
XmnI	GAANNNNTTC	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.