AT5G65880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0019178
Physical Location & Seq
Forward (+)
26352773 .. 26353882
1110 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G65880.1

Sequence Viewer

Length: 189 bp
ATGTTTCGAAGGAACAGGTTTCTGTCTTTGCCAATGGTGATCGGTGCAGTTGTGATTGGTGTGGTTTCAGGGAAAGCTATTTTCGGGCCTCCGCTTGATCAGTACTGGAAAGAGAAGCTCGAACGAGAAGAAGCTGTTGTTGCCAAGGAAGAAGTCATTGAAAAGAGCTCAGATTCATCGTCAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.93

Weight (kDa)

6.2

Isoelectric Point (pI)

49.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIGBOS1 PF23670 3 - 56 1.7e-16 PIGBOS1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65880
malus_domestica MD02G1189100.v1.1
prunus_persica Prupe.6G217600_v2.0.a1 Prupe.6G217600_v2.0.a1
pyrus_communis pycom15g26250
rosa_chinensis RchiOBHm_Chr2g0108561
rosa_roxburghii Rroxscaffold_2G00135020
rosa_wichuraiana Rw2G016250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AfaI GTAC 1 cut(s) 104
AgsI TTSAA 1 cut(s) 161
AluBI AGCT 4 cut(s) 77, 118, 134, 168
AluI AGCT 4 cut(s) 77, 118, 134, 168
Alw21I GWGCWC 1 cut(s) 170
AoxI GGCC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 86
AsuHPI GGTGA 1 cut(s) 49
AsuII TTCGAA 1 cut(s) 7
BanII GRGCYC 1 cut(s) 170
Bbv12I GWGCWC 1 cut(s) 170
BclI TGATCA 1 cut(s) 97
BmcAI AGTACT 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 86
Bpu14I TTCGAA 1 cut(s) 7
BsaJI CCNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 144
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 1 cut(s) 110
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 170
BsnI GGCC 1 cut(s) 88
Bsp119I TTCGAA 1 cut(s) 7
Bsp1286I GDGCHC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 39, 97
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 182
BspT104I TTCGAA 1 cut(s) 7
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 2 cut(s) 39, 97
BssT1I CCWWGG 1 cut(s) 144
BstBI TTCGAA 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 169
BstKTI GATC 2 cut(s) 42, 100
BstMBI GATC 2 cut(s) 39, 97
BstMWI GCNNNNNNNGC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 88
Cfr13I GGNCC 1 cut(s) 86
Csp6I GTAC 1 cut(s) 103
CviJI RGCY 5 cut(s) 77, 88, 118, 134, 168
CviKI_1 RGCY 5 cut(s) 77, 88, 118, 134, 168
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 169
DpnI GATC 2 cut(s) 41, 99
DpnII GATC 2 cut(s) 39, 97
Ecl136II GAGCTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 168
EcoICRI GAGCTC 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 144
FbaI TGATCA 1 cut(s) 97
FriOI GRGCYC 1 cut(s) 170
HaeIII GGCC 1 cut(s) 88
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 1 cut(s) 173
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 1 cut(s) 183
Hpy188I TCNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 183
HpyAV CCTTC 1 cut(s) 3
HpyCH4V TGCA 1 cut(s) 47
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 169
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 2 cut(s) 39, 97
LpnPI CCDG 2 cut(s) 54, 91
MalI GATC 2 cut(s) 41, 99
MboI GATC 2 cut(s) 39, 97
MboII GAAGA 2 cut(s) 140, 161
MhlI GDGCHC 1 cut(s) 170
MnlI CCTC 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 2 cut(s) 39, 97
NspV TTCGAA 1 cut(s) 7
PfeI GAWTC 1 cut(s) 173
Psp124BI GAGCTC 1 cut(s) 170
PspPI GGNCC 1 cut(s) 86
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SacI GAGCTC 1 cut(s) 170
Sau3AI GATC 2 cut(s) 39, 97
Sau96I GGNCC 1 cut(s) 86
ScaI AGTACT 1 cut(s) 104
SduI GDGCHC 1 cut(s) 170
SetI ASST 6 cut(s) 20, 79, 120, 136, 170, 188
SfuI TTCGAA 1 cut(s) 7
SgeI CNNG 8 cut(s) 28, 81, 97, 107, 118, 131, 137, 157
SsiI CCGC 1 cut(s) 92
SstI GAGCTC 1 cut(s) 170
StyI CCWWGG 1 cut(s) 144
TaqI TCGA 2 cut(s) 7, 120
TatI WGTACW 1 cut(s) 102
TfiI GAWTC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 165
ZrmI AGTACT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.