MD02G1189100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0019178
Physical Location & Seq
Reverse (-)
17270451 .. 17273297
2847 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1189100.v1.1.491

Sequence Viewer

Length: 162 bp
ATGTTTCGAAGACGATTCCTCTCGTTTCCTTTGGTAATTGGAGCAGCCGTGATTGGAGTTGTTTCAGGCAAGGCAATATTTGGACCCCCACTTGATGAGTACTGGAAAAAGAAGCAGCAGGAAGATGCAGCGGCAAAGGAGACTGATGCAAACTCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

5.84

Weight (kDa)

9.3

Isoelectric Point (pI)

52.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIGBOS1 PF23670 1 - 52 3.6e-17 PIGBOS1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65880
malus_domestica MD02G1189100.v1.1
prunus_persica Prupe.6G217600_v2.0.a1 Prupe.6G217600_v2.0.a1
pyrus_communis pycom15g26250
rosa_chinensis RchiOBHm_Chr2g0108561
rosa_roxburghii Rroxscaffold_2G00135020
rosa_wichuraiana Rw2G016250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 131
AfaI GTAC 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 134
ApeKI GCWGC 3 cut(s) 44, 115, 128
AspS9I GGNCC 1 cut(s) 83
AsuII TTCGAA 1 cut(s) 7
AvaII GGWCC 1 cut(s) 83
BbsI GAAGAC 1 cut(s) 16
BbvI GCAGC 3 cut(s) 56, 127, 140
BceAI ACGGC 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 134
BisI GCNGC 4 cut(s) 45, 116, 129, 132
BlsI GCNGC 4 cut(s) 46, 117, 130, 133
BmcAI AGTACT 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 2 cut(s) 115, 136
BpiI GAAGAC 1 cut(s) 16
Bpu14I TTCGAA 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 139
BsaXI ACNNNNNCTCC 2 cut(s) 33, 63
Bse1I ACTGG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 56, 127, 140
BsmAI GTCTC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 7
BspACI CCGC 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 85
BspT104I TTCGAA 1 cut(s) 7
BsrI ACTGG 1 cut(s) 107
BstBI TTCGAA 1 cut(s) 7
BstMAI GTCTC 1 cut(s) 134
BstV1I GCAGC 3 cut(s) 56, 127, 140
BstV2I GAAGAC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 100
CviJI RGCY 1 cut(s) 47
CviKI_1 RGCY 1 cut(s) 47
CviQI GTAC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 83
Fnu4HI GCNGC 4 cut(s) 45, 116, 129, 132
Fsp4HI GCNGC 4 cut(s) 45, 116, 129, 132
GluI GCNGC 4 cut(s) 45, 116, 129, 132
HinfI GANTC 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 128, 149
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 3 cut(s) 51, 88, 104
Lsp1109I GCAGC 3 cut(s) 56, 127, 140
LweI GCATC 2 cut(s) 115, 136
MboII GAAGA 2 cut(s) 21, 134
MluCI AATT 1 cut(s) 36
MnlI CCTC 1 cut(s) 29
MseI TTAA 1 cut(s) 160
MspA1I CMGCKG 1 cut(s) 131
NlaIV GGNNCC 1 cut(s) 85
NspV TTCGAA 1 cut(s) 7
PfeI GAWTC 1 cut(s) 15
PkrI GCNGC 4 cut(s) 46, 117, 130, 133
PspN4I GGNNCC 1 cut(s) 85
PspPI GGNCC 1 cut(s) 83
RsaI GTAC 1 cut(s) 101
RsaNI GTAC 1 cut(s) 100
SaqAI TTAA 1 cut(s) 160
SatI GCNGC 4 cut(s) 45, 116, 129, 132
Sau96I GGNCC 1 cut(s) 83
ScaI AGTACT 1 cut(s) 101
SfaNI GCATC 2 cut(s) 115, 136
SfuI TTCGAA 1 cut(s) 7
SgeI CNNG 7 cut(s) 34, 61, 78, 82, 104, 115, 131
SinI GGWCC 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 36
SsiI CCGC 1 cut(s) 131
SspI AATATT 1 cut(s) 78
TaqI TCGA 1 cut(s) 7
TasI AATT 1 cut(s) 36
TatI WGTACW 1 cut(s) 99
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 15
Tru1I TTAA 1 cut(s) 160
Tru9I TTAA 1 cut(s) 160
TseI GCWGC 3 cut(s) 44, 115, 128
VpaK11BI GGWCC 1 cut(s) 83
ZrmI AGTACT 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.