Rw2G016250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0019178
Physical Location & Seq
Reverse (-)
19055928 .. 19060388
4461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G016250.1

Sequence Viewer

Length: 165 bp
ATGTTTGGTCGACGCAAATTCCTCTCCTTTCCTTTAGTTATCGGAGCAGTCATAATTGGAGTTGCTTCAGGCAAGGCAATCTTTGGACCCCCACTTGAGGAGTACTGGACAAAGAAGCAGCAGGAAGAAGCAGCTGCAAGGGAGACTGATGCAAGCTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

5.93

Weight (kDa)

9.3

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIGBOS1 PF23670 5 - 54 1e-16 PIGBOS1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65880
malus_domestica MD02G1189100.v1.1
prunus_persica Prupe.6G217600_v2.0.a1 Prupe.6G217600_v2.0.a1
pyrus_communis pycom15g26250
rosa_chinensis RchiOBHm_Chr2g0108561
rosa_roxburghii Rroxscaffold_2G00135020
rosa_wichuraiana Rw2G016250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 10
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 97
AluBI AGCT 2 cut(s) 134, 156
AluI AGCT 2 cut(s) 134, 156
Alw26I GTCTC 1 cut(s) 137
ApeKI GCWGC 3 cut(s) 118, 131, 134
ApoI RAATTY 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 86
AvaII GGWCC 1 cut(s) 86
BbvI GCAGC 3 cut(s) 121, 130, 143
BcoDI GTCTC 1 cut(s) 137
BisI GCNGC 3 cut(s) 119, 132, 135
BlsI GCNGC 3 cut(s) 120, 133, 136
BmcAI AGTACT 1 cut(s) 104
Bme18I GGWCC 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 86
BmiI GGNNCC 1 cut(s) 88
BmsI GCATC 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse1I ACTGG 1 cut(s) 110
BseLI CCNNNNNNNGG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 3 cut(s) 121, 130, 143
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 1 cut(s) 137
BspLI GGNNCC 1 cut(s) 88
BsrI ACTGG 1 cut(s) 110
BstC8I GCNNGC 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 137
BstV1I GCAGC 3 cut(s) 121, 130, 143
Cac8I GCNNGC 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 86
CseI GACGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 103
CviJI RGCY 2 cut(s) 134, 156
CviKI_1 RGCY 2 cut(s) 134, 156
CviQI GTAC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 51
FaiI YATR 1 cut(s) 53
FalI AAGNNNNNCTT 2 cut(s) 65, 97
FblI GTMKAC 1 cut(s) 10
Fnu4HI GCNGC 3 cut(s) 119, 132, 135
Fsp4HI GCNGC 3 cut(s) 119, 132, 135
GluI GCNGC 3 cut(s) 119, 132, 135
HgaI GACGC 1 cut(s) 21
HincII GTYRAC 1 cut(s) 11
HindII GTYRAC 1 cut(s) 11
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 11
Hpy99I CGWCG 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 137, 152
LmnI GCTCC 1 cut(s) 44
LpnPI CCDG 3 cut(s) 54, 91, 107
Lsp1109I GCAGC 3 cut(s) 121, 130, 143
LweI GCATC 1 cut(s) 139
MboII GAAGA 1 cut(s) 137
MluCI AATT 2 cut(s) 17, 54
MnlI CCTC 2 cut(s) 32, 91
MspA1I CMGCKG 1 cut(s) 134
NlaIV GGNNCC 1 cut(s) 88
PkrI GCNGC 3 cut(s) 120, 133, 136
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 1 cut(s) 86
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SalI GTCGAC 1 cut(s) 9
SatI GCNGC 3 cut(s) 119, 132, 135
Sau96I GGNCC 1 cut(s) 86
ScaI AGTACT 1 cut(s) 104
SetI ASST 2 cut(s) 136, 158
SfaNI GCATC 1 cut(s) 139
SgeI CNNG 6 cut(s) 81, 85, 107, 118, 134, 150
SinI GGWCC 1 cut(s) 86
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 2 cut(s) 17, 54
TaqI TCGA 1 cut(s) 10
TasI AATT 2 cut(s) 17, 54
TatI WGTACW 1 cut(s) 102
TseI GCWGC 3 cut(s) 118, 131, 134
VpaK11BI GGWCC 1 cut(s) 86
XapI RAATTY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 10
ZrmI AGTACT 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.