AT5G66985

No description available

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
26743279 .. 26744019
741 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G66985.1

Sequence Viewer

Length: 252 bp
ATGGAATTTGCGACTTCGAAAGGAGAGGAGATTTTGAAAGATGAGCAAGTGTCCAAGCAGCTACACCTGATATCGTCTGAAACGCAAACGCAAACGCTGAACAAAAAAGCCGTTCTAAACCGCATCCGCAACCACAAATGTATTCACAAAATCAAGAGTCTTCTTCACACCACCGCGGCTAACAACGGAGCCACCGTCGACGCTGATTATTATCGGTGGATTGATAGCGGCGATGTCTTTTCTTGTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.39

Weight (kDa)

7.82

Isoelectric Point (pI)

40.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66985
fragaria_vesca FvH4_2g40530
prunus_persica Prupe.1G386500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300191
rosa_laevigata RLG00000011358
rosa_roxburghii Rroxscaffold_7G00168020
rosa_rugosa Rorug06G0293900
rosa_samantha Rh6AG406200 Rh6BG414100 Rh6CG421300 Rh6DG406900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 198
AccII CGCG 1 cut(s) 176
AciI CCGC 5 cut(s) 121, 127, 174, 176, 228
AcsI RAATTY 1 cut(s) 5
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 5
AsuII TTCGAA 1 cut(s) 17
BbsI GAAGAC 1 cut(s) 152
BbvI GCAGC 1 cut(s) 70
BceAI ACGGC 1 cut(s) 95
BisI GCNGC 3 cut(s) 59, 177, 229
BlsI GCNGC 3 cut(s) 60, 178, 230
BmiI GGNNCC 1 cut(s) 190
BmsI GCATC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 152
Bpu14I TTCGAA 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 180, 210
Bse8I GATNNNNATC 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 174
BseGI GGATG 1 cut(s) 123
BseJI GATNNNNATC 1 cut(s) 210
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 176
Bsp119I TTCGAA 1 cut(s) 17
BspACI CCGC 5 cut(s) 121, 127, 174, 176, 228
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 1 cut(s) 190
BspT104I TTCGAA 1 cut(s) 17
BssECI CCNNGG 1 cut(s) 174
Bst4CI ACNGT 1 cut(s) 196
BstBI TTCGAA 1 cut(s) 17
BstDSI CCRYGG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 176
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 1 cut(s) 70
BstV2I GAAGAC 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 174
BtgZI GCGATG 1 cut(s) 246
BtsCI GGATG 1 cut(s) 123
Cfr42I CCGCGG 1 cut(s) 177
CseI GACGC 1 cut(s) 209
CviJI RGCY 4 cut(s) 61, 110, 179, 191
CviKI_1 RGCY 4 cut(s) 61, 110, 179, 191
Eco32I GATATC 1 cut(s) 72
EcoRV GATATC 1 cut(s) 72
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 3 cut(s) 59, 177, 229
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 3 cut(s) 59, 177, 229
GluI GCNGC 3 cut(s) 59, 177, 229
HgaI GACGC 1 cut(s) 209
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 1 cut(s) 157
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 79
Hpy188III TCNNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 2 cut(s) 200, 203
HpyCH4III ACNGT 1 cut(s) 196
KspI CCGCGG 1 cut(s) 177
LmnI GCTCC 1 cut(s) 188
LpnPI CCDG 1 cut(s) 80
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 132
MboII GAAGA 2 cut(s) 152, 155
MluCI AATT 1 cut(s) 5
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 1 cut(s) 19
MspA1I CMGCKG 1 cut(s) 176
MvnI CGCG 1 cut(s) 176
NlaIV GGNNCC 1 cut(s) 190
NspV TTCGAA 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PkrI GCNGC 3 cut(s) 60, 178, 230
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 190
SacII CCGCGG 1 cut(s) 177
SalI GTCGAC 1 cut(s) 197
SatI GCNGC 3 cut(s) 59, 177, 229
SchI GAGTC 1 cut(s) 166
SetI ASST 2 cut(s) 63, 69
SfaNI GCATC 1 cut(s) 132
Sfr303I CCGCGG 1 cut(s) 177
SfuI TTCGAA 1 cut(s) 17
SgeI CNNG 5 cut(s) 59, 67, 79, 166, 187
SgrBI CCGCGG 1 cut(s) 177
SgrDI CGTCGACG 1 cut(s) 197
Sse9I AATT 1 cut(s) 5
SsiI CCGC 5 cut(s) 121, 127, 174, 176, 228
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 2 cut(s) 17, 198
TasI AATT 1 cut(s) 5
TauI GCSGC 2 cut(s) 179, 231
TseI GCWGC 1 cut(s) 58
TspGWI ACGGA 2 cut(s) 201, 237
XapI RAATTY 1 cut(s) 5
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.