FvH4_2g40530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017938
Physical Location & Seq
Reverse (-)
28878229 .. 28879168
940 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40530.t1

Sequence Viewer

Length: 315 bp
ATGTCATCCTCCTCCTACACGTTGTCAAAGACCAAATCCTCTGTGCAAAACGAAGCAGTGAGCATCAGCAGCATCAACCTGAGGGAAGATCATGACGGAGAAACTTATGACAGAAGCAACGTGAGCACCCTACTGTATCTGAAACCAACTCACACCTCGGAAACCCTAGATAAAGAGGTGGTTCTGCGGCGGATCCGACAACGCAAGCGAGTCAACAAACTCCGTGCTGCTCTTCAATCTCTTCTCACCTCTCCGGTCTTGCCGACGGCCCACGAAAAGAAGAAGTGGGTCGACGATGCCTTTGCGGCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.74

Weight (kDa)

9.69

Isoelectric Point (pI)

59.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G66985
fragaria_vesca FvH4_2g40530
prunus_persica Prupe.1G386500_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300191
rosa_laevigata RLG00000011358
rosa_roxburghii Rroxscaffold_7G00168020
rosa_rugosa Rorug06G0293900
rosa_samantha Rh6AG406200 Rh6BG414100 Rh6CG421300 Rh6DG406900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 307
AccI GTMKAC 1 cut(s) 291
AciI CCGC 3 cut(s) 187, 190, 305
AclWI GGATC 2 cut(s) 187, 200
AflIII ACRYGT 1 cut(s) 18
AgsI TTSAA 1 cut(s) 236
Alw21I GWGCWC 1 cut(s) 128
AlwI GGATC 2 cut(s) 187, 200
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 2 cut(s) 69, 227
ArsI GACNNNNNNTTYG 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 238
AxyI CCTNAGG 1 cut(s) 80
BamHI GGATCC 1 cut(s) 192
BanI GGYRCC 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 128
BbvI GCAGC 2 cut(s) 81, 214
BceAI ACGGC 1 cut(s) 282
BcgI CGANNNNNNTGC 1 cut(s) 284
BfaI CTAG 1 cut(s) 167
BglI GCCNNNNNGGC 1 cut(s) 305
BisI GCNGC 4 cut(s) 70, 188, 228, 306
BlsI GCNGC 4 cut(s) 71, 189, 229, 307
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 2 cut(s) 194, 309
BmsI GCATC 3 cut(s) 72, 81, 286
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 253
Bse21I CCTNAGG 1 cut(s) 80
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 71
BseXI GCAGC 2 cut(s) 81, 214
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 307
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 254
BsnI GGCC 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 2 cut(s) 88, 192
BspACI CCGC 3 cut(s) 187, 190, 305
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 72
BspHI TCATGA 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 194, 309
BspPI GGATC 2 cut(s) 187, 200
BspQI GCTCTTC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 307
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 88, 192
Bst4CI ACNGT 1 cut(s) 135
Bst6I CTCTTC 2 cut(s) 237, 246
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 80
BstF5I GGATG 1 cut(s) 5
BstKTI GATC 2 cut(s) 91, 195
BstMBI GATC 2 cut(s) 88, 192
BstMWI GCNNNNNNNGC 3 cut(s) 69, 123, 305
BstV1I GCAGC 2 cut(s) 81, 214
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
Bsu36I CCTNAGG 1 cut(s) 80
BsuRI GGCC 1 cut(s) 269
BtsCI GGATG 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 206
CciI TCATGA 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 268
CviAII CATG 1 cut(s) 92
CviJI RGCY 1 cut(s) 269
CviKI_1 RGCY 1 cut(s) 269
DdeI CTNAG 1 cut(s) 80
DpnI GATC 2 cut(s) 90, 194
DpnII GATC 2 cut(s) 88, 192
Eam1104I CTCTTC 2 cut(s) 237, 246
EarI CTCTTC 2 cut(s) 237, 246
EciI GGCGGA 1 cut(s) 205
Eco81I CCTNAGG 1 cut(s) 80
FaeI CATG 1 cut(s) 95
FaiI YATR 2 cut(s) 93, 108
FatI CATG 1 cut(s) 91
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 4 cut(s) 70, 188, 228, 306
Fsp4HI GCNGC 4 cut(s) 70, 188, 228, 306
FspBI CTAG 1 cut(s) 167
GluI GCNGC 4 cut(s) 70, 188, 228, 306
HaeIII GGCC 1 cut(s) 269
HapII CCGG 1 cut(s) 254
Hin1II CATG 1 cut(s) 95
HincII GTYRAC 2 cut(s) 214, 292
HindII GTYRAC 2 cut(s) 214, 292
HinfI GANTC 1 cut(s) 210
HpaII CCGG 1 cut(s) 254
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 2 cut(s) 214, 292
Hpy188I TCNGA 3 cut(s) 141, 160, 197
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 2 cut(s) 214, 292
Hpy99I CGWCG 2 cut(s) 268, 296
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4IV ACGT 2 cut(s) 20, 120
HpyCH4V TGCA 1 cut(s) 46
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 123, 305
HpyF3I CTNAG 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 20, 120
Hsp92II CATG 1 cut(s) 95
Kzo9I GATC 2 cut(s) 88, 192
LguI GCTCTTC 1 cut(s) 237
LpnPI CCDG 2 cut(s) 92, 267
Lsp1109I GCAGC 2 cut(s) 81, 214
LweI GCATC 3 cut(s) 72, 81, 286
MaeI CTAG 1 cut(s) 167
MaeII ACGT 2 cut(s) 20, 120
MalI GATC 2 cut(s) 90, 194
MboI GATC 2 cut(s) 88, 192
MboII GAAGA 4 cut(s) 98, 224, 233, 292
MflI RGATCY 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 128
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 7 cut(s) 19, 22, 49, 75, 166, 169, 259
MseI TTAA 1 cut(s) 313
MspI CCGG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 69, 123, 305
NdeII GATC 2 cut(s) 88, 192
NlaIII CATG 1 cut(s) 95
NlaIV GGNNCC 2 cut(s) 194, 309
PagI TCATGA 1 cut(s) 91
PciSI GCTCTTC 1 cut(s) 237
PkrI GCNGC 4 cut(s) 71, 189, 229, 307
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 194, 309
PspPI GGNCC 1 cut(s) 268
PsuI RGATCY 1 cut(s) 192
SalI GTCGAC 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 237
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 4 cut(s) 70, 188, 228, 306
Sau3AI GATC 2 cut(s) 88, 192
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 219
SduI GDGCHC 1 cut(s) 128
SetI ASST 7 cut(s) 23, 81, 123, 158, 180, 251, 313
SfaNI GCATC 3 cut(s) 72, 81, 286
SsiI CCGC 3 cut(s) 187, 190, 305
SspMI CTAG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 135
TaiI ACGT 2 cut(s) 23, 123
TaqI TCGA 1 cut(s) 291
TauI GCSGC 2 cut(s) 190, 308
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 1 cut(s) 63
TseI GCWGC 2 cut(s) 69, 227
TspGWI ACGGA 2 cut(s) 111, 212
TspRI CASTG 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 291
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.