Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0017938

Physical Location & Seq

Genomic Coordinates Reverse (-)

34619462 .. 34620284

Gene Structure 823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G386500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGTCCTCGTGGACCTCCTCTTCCTTCAAATCCTCTGCACCAGAAGAAGGTTTGAGCATCGCAAGCATCAGTTTGGAGGAAGAGCAAGAAGACCCAGCAGCAACCCACCATGGCCATAATAACTACGTCAGCAGCCATGTGCATATAAAACCCACCCACACCTCTCAACCCTTAGACAAAGATGTGGTTTTGCGGCGTATCAGACAGCGCAAGCGTGTCAACAGAGTGCGCGCCGCTCTGCAAGCCCTGCTGATCAGCTCTCCCTTCTCCCCGCCTGTCCATGAGAACAAGTGGGTCGATGATGCCTTTGCCGCTCCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

11.92

Weight (kDa)

7.07

Isoelectric Point (pI)

80.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017938)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G66985
fragaria_vesca	FvH4_2g40530
prunus_persica	Prupe.1G386500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0300191
rosa_laevigata	RLG00000011358
rosa_roxburghii	Rroxscaffold_7G00168020
rosa_rugosa	Rorug06G0293900
rosa_samantha	Rh6AG406200 Rh6BG414100 Rh6CG421300 Rh6DG406900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	236, 314
AccII	CGCG	1 cut(s)	231
AciI	CCGC	4 cut(s)	193, 234, 272, 312
AcoI	YGGCCR	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	28
AluBI	AGCT	1 cut(s)	258
AluI	AGCT	1 cut(s)	258
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	98, 132
AspLEI	GCGC	3 cut(s)	210, 231, 233
AspS9I	GGNCC	1 cut(s)	12
AvaII	GGWCC	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	114
BauI	CACGAG	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	110, 144
BclI	TGATCA	1 cut(s)	252
BisI	GCNGC	5 cut(s)	99, 133, 194, 234, 312
BlsI	GCNGC	5 cut(s)	100, 134, 195, 235, 313
Bme18I	GGWCC	1 cut(s)	12
BmgT120I	GGNCC	1 cut(s)	12
BmsI	GCATC	3 cut(s)	66, 75, 292
BpiI	GAAGAC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	47
BsePI	GCGCGC	1 cut(s)	229
BseRI	GAGGAG	2 cut(s)	7, 306
BseXI	GCAGC	2 cut(s)	110, 144
BseYI	CCCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	21
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	47
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	252
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	4 cut(s)	193, 234, 272, 312
BspANI	GGCC	1 cut(s)	114
BspFNI	CGCG	1 cut(s)	231
BspQI	GCTCTTC	1 cut(s)	75
BsrBI	CCGCTC	2 cut(s)	236, 314
BssECI	CCNNGG	1 cut(s)	109
BssHII	GCGCGC	1 cut(s)	229
BssMI	GATC	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	109
Bst2BI	CACGAG	1 cut(s)	7
Bst6I	CTCTTC	2 cut(s)	25, 75
BstAPI	GCANNNNNTGC	1 cut(s)	247
BstC8I	GCNNGC	4 cut(s)	64, 212, 231, 243
BstDEI	CTNAG	1 cut(s)	172
BstDSI	CCRYGG	1 cut(s)	109
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	3 cut(s)	210, 231, 233
BstKTI	GATC	1 cut(s)	255
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 242, 247, 311
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	110, 144
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	43
Cac8I	GCNNGC	4 cut(s)	64, 212, 231, 243
CfoI	GCGC	3 cut(s)	210, 231, 233
Cfr13I	GGNCC	1 cut(s)	12
CviAII	CATG	3 cut(s)	110, 137, 281
CviJI	RGCY	4 cut(s)	114, 135, 245, 258
CviKI_1	RGCY	4 cut(s)	114, 135, 245, 258
DdeI	CTNAG	1 cut(s)	172
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	25, 75
EarI	CTCTTC	2 cut(s)	25, 75
Eco130I	CCWWGG	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	3 cut(s)	113, 140, 284
FaiI	YATR	6 cut(s)	111, 117, 138, 144, 146, 282
FatI	CATG	3 cut(s)	109, 136, 280
FauI	CCCGC	1 cut(s)	279
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	99, 133, 194, 234, 312
Fsp4HI	GCNGC	5 cut(s)	99, 133, 194, 234, 312
GlaI	GCGC	3 cut(s)	209, 230, 232
GluI	GCNGC	5 cut(s)	99, 133, 194, 234, 312
GsaI	CCCAGC	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	114
HhaI	GCGC	3 cut(s)	210, 231, 233
Hin1II	CATG	3 cut(s)	113, 140, 284
Hin6I	GCGC	3 cut(s)	208, 229, 231
HinP1I	GCGC	3 cut(s)	208, 229, 231
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	12, 220
Hpy188I	TCNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	12, 220
HpyAV	CCTTC	3 cut(s)	34, 41, 274
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	3 cut(s)	38, 142, 241
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 242, 247, 311
HpyF3I	CTNAG	1 cut(s)	172
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	113, 140, 284
HspAI	GCGC	3 cut(s)	208, 229, 231
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	252
LguI	GCTCTTC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	4 cut(s)	54, 108, 260, 288
Lsp1109I	GCAGC	2 cut(s)	110, 144
LweI	GCATC	3 cut(s)	66, 75, 292
MaeII	ACGT	1 cut(s)	126
MalI	GATC	1 cut(s)	254
MbiI	CCGCTC	2 cut(s)	236, 314
MboI	GATC	1 cut(s)	252
MboII	GAAGA	4 cut(s)	12, 56, 92, 101
MlsI	TGGCCA	1 cut(s)	114
MluNI	TGGCCA	1 cut(s)	114
MnlI	CCTC	6 cut(s)	16, 25, 28, 43, 70, 172
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	1 cut(s)	322
Msp20I	TGGCCA	1 cut(s)	114
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	63, 242, 247, 311
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	3 cut(s)	113, 140, 284
PauI	GCGCGC	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	75
PkrI	GCNGC	5 cut(s)	100, 134, 195, 235, 313
PspFI	CCCAGC	1 cut(s)	94
PspPI	GGNCC	1 cut(s)	12
PteI	GCGCGC	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	322
SatI	GCNGC	5 cut(s)	99, 133, 194, 234, 312
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	1 cut(s)	12
SetI	ASST	5 cut(s)	17, 52, 129, 164, 260
SfaNI	GCATC	3 cut(s)	66, 75, 292
SinI	GGWCC	1 cut(s)	12
SsiI	CCGC	4 cut(s)	193, 234, 272, 312
StyI	CCWWGG	1 cut(s)	109
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	1 cut(s)	297
TauI	GCSGC	3 cut(s)	196, 236, 314
Tru1I	TTAA	1 cut(s)	322
Tru9I	TTAA	1 cut(s)	322
TseI	GCWGC	2 cut(s)	98, 132
VpaK11BI	GGWCC	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.