Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0022044

Physical Location & Seq

Genomic Coordinates Forward (+)

7017 .. 7202

Gene Structure 186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGCTTAATATATTTAATTTGATCTGTATTTTTTTTAATTCTACCCTTTTTTCAAGCACTTTTTTAGTCGCCAAATTGCCAGAGGCCTACGCCTTTTTGAATCCAATCGTAGATGTTATGCCCGTAATACCTCTTTTCTTTCTTCTCTTAGCCTTTGTTTGGCAAGCCGCTGTAAGTTTTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

PsbK

Protein Analysis

61

Amino Acids

6.98

Weight (kDa)

5.82

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PsbK	PF02533	21 - 61	2.6e-24	Photosystem II 4 kDa reaction centre component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022044)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00070
malus_domestica	MD03G1146700.v1.1
rosa_chinensis	RchiOBHm_CPg0502501
rosa_rugosa	RorugMtG0001400

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	168
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	54, 100
AoxI	GGCC	1 cut(s)	84
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
BseLI	CCNNNNNNNGG	1 cut(s)	159
BshFI	GGCC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	159
BsnI	GGCC	1 cut(s)	86
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	168
BspANI	GGCC	1 cut(s)	86
BssMI	GATC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	86
Cac8I	GCNNGC	1 cut(s)	165
CviJI	RGCY	3 cut(s)	86, 152, 167
CviKI_1	RGCY	3 cut(s)	86, 152, 167
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Eco147I	AGGCCT	1 cut(s)	86
FaiI	YATR	2 cut(s)	11, 119
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	86
HinfI	GANTC	1 cut(s)	100
HpyF3I	CTNAG	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	21
LpnPI	CCDG	1 cut(s)	93
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	1 cut(s)	134
MluCI	AATT	3 cut(s)	16, 37, 74
MnlI	CCTC	2 cut(s)	76, 141
MseI	TTAA	3 cut(s)	6, 15, 36
MspA1I	CMGCKG	1 cut(s)	170
NdeII	GATC	1 cut(s)	21
PceI	AGGCCT	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	6, 15, 36
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	21
SetI	ASST	1 cut(s)	133
SgeI	CNNG	4 cut(s)	66, 92, 134, 176
Sse9I	AATT	3 cut(s)	16, 37, 74
SseBI	AGGCCT	1 cut(s)	86
SsiI	CCGC	1 cut(s)	168
StuI	AGGCCT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	181
TasI	AATT	3 cut(s)	16, 37, 74
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	3 cut(s)	6, 15, 36
Tru9I	TTAA	3 cut(s)	6, 15, 36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.