MD03G1146700.v1.1

PSII is a light-driven water plastoquinone oxidoreductase that uses light energy to abstract electrons from H(2)O, generating O(2) and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
16087240 .. 16087398
159 bp
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UTR
Exon/CDS
Intron
MD03G1146700.v1.1.491

Sequence Viewer

Length: 159 bp
ATGTTTGTTATGCTTAATATATTTAGTTTGATCTGTATCTGTCTTAATTCTGCTCTTTATTCAAGTAGTTTTTTTGTCGCCAAATTGCCTGAGGCCTACACTTTTTTAAATCCAATCTCACAAAGATTGGTTTCAGTGAATTTCCATTTACTAATTTAA
Functional Annotation

Protein Analysis

53

Amino Acids

5.93

Weight (kDa)

7.82

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022044)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG00070
malus_domestica MD03G1146700.v1.1
rosa_chinensis RchiOBHm_CPg0502501
rosa_rugosa RorugMtG0001400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 139
AgsI TTSAA 1 cut(s) 63
AoxI GGCC 1 cut(s) 93
ApoI RAATTY 1 cut(s) 139
AxyI CCTNAGG 1 cut(s) 90
BsaBI GATNNNNATC 1 cut(s) 35
Bse21I CCTNAGG 1 cut(s) 90
Bse8I GATNNNNATC 1 cut(s) 35
BseJI GATNNNNATC 1 cut(s) 35
BseMII CTCAG 1 cut(s) 81
BshFI GGCC 1 cut(s) 95
BsnI GGCC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 30
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 82
BssMI GATC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 90
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
Bsu36I CCTNAGG 1 cut(s) 90
BsuRI GGCC 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 141
CviJI RGCY 1 cut(s) 95
CviKI_1 RGCY 1 cut(s) 95
DdeI CTNAG 1 cut(s) 90
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
DraI TTTAAA 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 95
Eco81I CCTNAGG 1 cut(s) 90
FaiI YATR 2 cut(s) 11, 20
FspEI CC 6 cut(s) 77, 94, 102, 109, 113, 126
HaeIII GGCC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 90
Kzo9I GATC 1 cut(s) 30
LpnPI CCDG 1 cut(s) 102
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MluCI AATT 4 cut(s) 46, 83, 139, 153
MnlI CCTC 1 cut(s) 85
MseI TTAA 4 cut(s) 15, 45, 107, 157
NdeII GATC 1 cut(s) 30
PceI AGGCCT 1 cut(s) 95
SaqAI TTAA 4 cut(s) 15, 45, 107, 157
Sau3AI GATC 1 cut(s) 30
SgeI CNNG 2 cut(s) 75, 101
Sse9I AATT 4 cut(s) 46, 83, 139, 153
SseBI AGGCCT 1 cut(s) 95
StuI AGGCCT 1 cut(s) 95
TasI AATT 4 cut(s) 46, 83, 139, 153
Tru1I TTAA 4 cut(s) 15, 45, 107, 157
Tru9I TTAA 4 cut(s) 15, 45, 107, 157
TscAI CASTG 1 cut(s) 141
TspRI CASTG 1 cut(s) 141
XapI RAATTY 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.