Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017960

Physical Location & Seq

Genomic Coordinates Reverse (-)

45223 .. 45828

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG00380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCACGTTACCGAGGGCCTCGTTTTAAAAAAATACGCCGTCTGGGGGCTTTACCGGGACTAACTAGTAAAAGGCCTAAGGCAGGAAGCGATCTTAGAAACCAATCACGCTCCGTAAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACACCAATTACTTAAATATGTGCGTATAGCCGGAAAAGCCAAGGGGTCAACAGGTCAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATGGCTTTGACTATTCCTCAAGCGCGCCAATTAGTTAATCATGGACATATTTTAGTTAATGGTCGTATAGTTGATATACCAAGTTATCGCTGCAAACCCCGAGATATTATTACAGTGAAGGATGAACAAAACTCTAGAACTTTGGTTCAAAATCTTCTTGATTCATCTGCCCCTGAGGAATTGCCAAACCATCTGACTCTTCACACATTCCAATATGAAGGGTTAGTCAATCAAATAATAGATAGGAAATGCGTCGGTTTGAAAATAAATGAATTGCTTGTCGTAGAATATTACTCTCGACAGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006417 GO:0006450 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

201

Amino Acids

23.24

Weight (kDa)

10.33

Isoelectric Point (pI)

40.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	3 - 88	5.9e-16	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	89 - 136	1.4e-20	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00380
pyrus_communis	pycom12397g00290
rosa_laevigata	RLG00000000043 RLG00000000111 RLG00000000168 RLG00000000226 RLG00000000262 RLG00000000289 RLG00000000295 RLG00000000345 RLG00000037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	322
AfiI	CCNNNNNNNGG	2 cut(s)	46, 83
AgsI	TTSAA	3 cut(s)	263, 446, 559
AhlI	ACTAGT	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	396
AoxI	GGCC	2 cut(s)	17, 74
ApeKI	GCWGC	1 cut(s)	387
AspLEI	GCGC	2 cut(s)	322, 324
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	1 cut(s)	57
AvaI	CYCGRG	1 cut(s)	396
AxyI	CCTNAGG	2 cut(s)	78, 471
BbvI	GCAGC	1 cut(s)	374
BccI	CCATC	1 cut(s)	495
BceAI	ACGGC	1 cut(s)	24
BcnI	CCSGG	1 cut(s)	57
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	2 cut(s)	66, 432
BisI	GCNGC	1 cut(s)	388
BlsI	GCNGC	1 cut(s)	389
Bme1390I	CCNGG	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	57
BpuEI	CTTGAG	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	13, 225
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 83
Bse21I	CCTNAGG	2 cut(s)	78, 471
BseDI	CCNNGG	2 cut(s)	13, 225
BseGI	GGATG	2 cut(s)	279, 424
BseLI	CCNNNNNNNGG	2 cut(s)	46, 83
BseMII	CTCAG	1 cut(s)	462
BsePI	GCGCGC	1 cut(s)	320
BseXI	GCAGC	1 cut(s)	374
Bsh1236I	CGCG	1 cut(s)	322
BshFI	GGCC	2 cut(s)	19, 76
BsiHKCI	CYCGRG	1 cut(s)	396
BsiSI	CCGG	2 cut(s)	56, 216
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	46, 83
BsmFI	GGGAC	1 cut(s)	72
BsnI	GGCC	2 cut(s)	19, 76
BsoBI	CYCGRG	1 cut(s)	396
Bsp143I	GATC	1 cut(s)	91
BspANI	GGCC	2 cut(s)	19, 76
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	1 cut(s)	322
BssECI	CCNNGG	2 cut(s)	13, 225
BssHII	GCGCGC	1 cut(s)	320
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	412
Bst6I	CTCTTC	1 cut(s)	501
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	3 cut(s)	78, 95, 471
BstENI	CCTNNNNNAGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	279, 424
BstFNI	CGCG	1 cut(s)	322
BstHHI	GCGC	2 cut(s)	322, 324
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	55
BstUI	CGCG	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	374
Bsu36I	CCTNAGG	2 cut(s)	78, 471
BsuRI	GGCC	2 cut(s)	19, 76
BtsCI	GGATG	2 cut(s)	279, 424
BtsIMutI	CAGTG	1 cut(s)	417
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	2 cut(s)	322, 324
Cfr13I	GGNCC	1 cut(s)	17
CseI	GACGC	1 cut(s)	538
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	6 cut(s)	19, 50, 76, 215, 224, 302
CviKI_1	RGCY	6 cut(s)	19, 50, 76, 215, 224, 302
DdeI	CTNAG	3 cut(s)	78, 95, 471
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
DraI	TTTAAA	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	501
EarI	CTCTTC	1 cut(s)	501
Eco130I	CCWWGG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	76
Eco81I	CCTNAGG	2 cut(s)	78, 471
Eco88I	CYCGRG	1 cut(s)	396
EcoNI	CCTNNNNNAGG	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	225
ErhI	CCWWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	341
FaiI	YATR	9 cut(s)	174, 204, 212, 299, 339, 345, 365, 374, 513
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	1 cut(s)	337
Fnu4HI	GCNGC	1 cut(s)	388
FokI	GGATG	2 cut(s)	266, 431
Fsp4HI	GCNGC	1 cut(s)	388
FspBI	CTAG	2 cut(s)	66, 432
GlaI	GCGC	2 cut(s)	321, 323
GluI	GCNGC	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	19, 76
HapII	CCGG	2 cut(s)	56, 216
HgaI	GACGC	1 cut(s)	538
HhaI	GCGC	2 cut(s)	322, 324
Hin1II	CATG	1 cut(s)	341
Hin6I	GCGC	2 cut(s)	320, 322
HinP1I	GCGC	2 cut(s)	320, 322
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HinfI	GANTC	2 cut(s)	458, 493
HpaII	CCGG	2 cut(s)	56, 216
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	1 cut(s)	492
Hpy188III	TCNNGA	3 cut(s)	432, 455, 594
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	1 cut(s)	554
HpyAV	CCTTC	2 cut(s)	409, 509
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	3 cut(s)	78, 95, 471
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	1 cut(s)	341
HspAI	GCGC	2 cut(s)	320, 322
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	6 cut(s)	29, 69, 69, 222, 229, 483
Lsp1109I	GCAGC	1 cut(s)	374
MaeI	CTAG	2 cut(s)	66, 432
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	2 cut(s)	3, 8
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	158, 443, 488
MluCI	AATT	6 cut(s)	158, 191, 254, 326, 476, 569
MlyI	GAGTC	1 cut(s)	487
MnlI	CCTC	4 cut(s)	8, 30, 324, 466
MseI	TTAA	5 cut(s)	27, 198, 333, 354, 604
MspI	CCGG	2 cut(s)	56, 216
MspR9I	CCNGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	322
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	341
NmuCI	GTSAC	1 cut(s)	3
PauI	GCGCGC	1 cut(s)	320
PceI	AGGCCT	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	1 cut(s)	389
PleI	GAGTC	1 cut(s)	487
PpsI	GAGTC	1 cut(s)	487
PspPI	GGNCC	1 cut(s)	17
PsrI	GAACNNNNNNTAC	2 cut(s)	177, 209
PteI	GCGCGC	1 cut(s)	320
SaqAI	TTAA	5 cut(s)	27, 198, 333, 354, 604
SatI	GCNGC	1 cut(s)	388
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	17
SchI	GAGTC	1 cut(s)	487
ScrFI	CCNGG	1 cut(s)	57
SetI	ASST	2 cut(s)	10, 241
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	6 cut(s)	158, 191, 254, 326, 476, 569
SseBI	AGGCCT	1 cut(s)	76
SspI	AATATT	1 cut(s)	587
SspMI	CTAG	2 cut(s)	66, 432
StuI	AGGCCT	1 cut(s)	76
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	289, 595
TasI	AATT	6 cut(s)	158, 191, 254, 326, 476, 569
TfiI	GAWTC	1 cut(s)	458
Tru1I	TTAA	5 cut(s)	27, 198, 333, 354, 604
Tru9I	TTAA	5 cut(s)	27, 198, 333, 354, 604
TscAI	CASTG	1 cut(s)	417
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	1 cut(s)	387
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	5 cut(s)	158, 435, 450, 528, 582
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	417
XagI	CCTNNNNNAGG	1 cut(s)	81
XbaI	TCTAGA	1 cut(s)	431
XspI	CTAG	2 cut(s)	66, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.