Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017960

Physical Location & Seq

Genomic Coordinates Forward (+)

239612 .. 241817

Gene Structure 2206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000262

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCGCGTTACAGAGGACCTCGTTTCAAAAAAATCCGCCGTCTGGGGGCTTTACCGGGGCTAACTAGTAAAAAGCCTAGAGCCGGAAGCGATCTTCGAACCCAATCGCGCCCCGGCAAAAAATCGCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGCTTTCATTATGGTCTTACGGAACAACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGGTCAACAGGTCAGGTTTTACTACAACTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAACCACAGGCATATTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGATGCAAACCCAGAGATATTATTACGGTGAAGTTTGTAAATAAAGCAACCCCTTCTGTCGTGTATCCCCGATTAATGCAGCCTCAGATGCTTCGATTGTCGATTCTAGAGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006417 GO:0006450 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

167

Amino Acids

19.27

Weight (kDa)

11.36

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	3 - 88	9.7e-17	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	89 - 136	1.2e-20	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00380
pyrus_communis	pycom12397g00290
rosa_laevigata	RLG00000000043 RLG00000000111 RLG00000000168 RLG00000000226 RLG00000000262 RLG00000000289 RLG00000000295 RLG00000000345 RLG00000037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	7, 109
AciI	CCGC	2 cut(s)	37, 322
AfiI	CCNNNNNNNGG	3 cut(s)	43, 46, 83
AgsI	TTSAA	2 cut(s)	28, 263
AhlI	ACTAGT	1 cut(s)	65
ApeKI	GCWGC	1 cut(s)	463
AseI	ATTAAT	1 cut(s)	458
AspLEI	GCGC	2 cut(s)	111, 165
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	2 cut(s)	57, 114
AsuHPI	GGTGA	1 cut(s)	424
AsuII	TTCGAA	1 cut(s)	97
AvaII	GGWCC	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	193, 226
BbvI	GCAGC	1 cut(s)	475
BceAI	ACGGC	1 cut(s)	24
BciVI	GTATCC	1 cut(s)	459
BcnI	CCSGG	2 cut(s)	57, 114
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	3 cut(s)	66, 78, 491
BfuI	GTATCC	1 cut(s)	459
BisI	GCNGC	1 cut(s)	464
BlsI	GCNGC	1 cut(s)	465
Bme1390I	CCNGG	2 cut(s)	57, 114
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	1 cut(s)	17
BmrFI	CCNGG	2 cut(s)	57, 114
BmsI	GCATC	2 cut(s)	377, 462
Bpu14I	TTCGAA	1 cut(s)	97
BpuEI	CTTGAG	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	57, 114
Bsa29I	ATCGAT	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	56, 112
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 46, 83
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	56, 112
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	43, 46, 83
BseMII	CTCAG	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	475
Bsh1236I	CGCG	2 cut(s)	7, 109
BshVI	ATCGAT	1 cut(s)	385
BsiSI	CCGG	4 cut(s)	56, 84, 114, 216
BslI	CCNNNNNNNGG	3 cut(s)	43, 46, 83
Bsp119I	TTCGAA	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	2 cut(s)	37, 322
BspCNI	CTCAG	1 cut(s)	481
BspDI	ATCGAT	1 cut(s)	385
BspFNI	CGCG	2 cut(s)	7, 109
BspT104I	TTCGAA	1 cut(s)	97
BssECI	CCNNGG	2 cut(s)	56, 112
BssMI	GATC	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	412
BstBI	TTCGAA	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	2 cut(s)	7, 109
BstHHI	GCGC	2 cut(s)	111, 165
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	221, 472
BstSCI	CCNGG	2 cut(s)	55, 112
BstUI	CGCG	2 cut(s)	7, 109
BstV1I	GCAGC	1 cut(s)	475
Bsu15I	ATCGAT	1 cut(s)	385
BsuI	GTATCC	1 cut(s)	459
BsuTUI	ATCGAT	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	2 cut(s)	111, 165
Cfr13I	GGNCC	1 cut(s)	17
ClaI	ATCGAT	1 cut(s)	385
CviJI	RGCY	8 cut(s)	50, 61, 76, 83, 224, 302, 320, 466
CviKI_1	RGCY	8 cut(s)	50, 61, 76, 83, 224, 302, 320, 466
DdeI	CTNAG	1 cut(s)	468
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EciI	GGCGGA	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	17
FaiI	YATR	5 cut(s)	174, 299, 345, 365, 374
FauI	CCCGC	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	464
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	1 cut(s)	464
FspBI	CTAG	3 cut(s)	66, 78, 491
GlaI	GCGC	2 cut(s)	110, 164
GluI	GCNGC	1 cut(s)	464
HapII	CCGG	4 cut(s)	56, 84, 114, 216
HhaI	GCGC	2 cut(s)	111, 165
Hin6I	GCGC	2 cut(s)	109, 163
HinP1I	GCGC	2 cut(s)	109, 163
HincII	GTYRAC	2 cut(s)	234, 334
HindII	GTYRAC	2 cut(s)	234, 334
HinfI	GANTC	1 cut(s)	487
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	4 cut(s)	56, 84, 114, 216
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	2 cut(s)	234, 334
Hpy188I	TCNGA	1 cut(s)	471
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	2 cut(s)	234, 334
HpyAV	CCTTC	1 cut(s)	447
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	390, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	221, 472
HpyF3I	CTNAG	1 cut(s)	468
HpySE526I	ACGT	1 cut(s)	204
HspAI	GCGC	2 cut(s)	109, 163
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	9 cut(s)	29, 69, 97, 127, 222, 227, 229, 325, 409
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	2 cut(s)	377, 462
MaeI	CTAG	3 cut(s)	66, 78, 491
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	86, 158
MluCI	AATT	3 cut(s)	158, 191, 326
MnlI	CCTC	4 cut(s)	8, 30, 324, 477
MseI	TTAA	4 cut(s)	198, 333, 354, 458
MspI	CCGG	4 cut(s)	56, 84, 114, 216
MspR9I	CCNGG	2 cut(s)	57, 114
MvnI	CGCG	2 cut(s)	7, 109
MwoI	GCNNNNNNNGC	2 cut(s)	221, 472
NciI	CCSGG	2 cut(s)	57, 114
NdeII	GATC	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	487
PkrI	GCNGC	1 cut(s)	465
PpuMI	RGGWCCY	1 cut(s)	17
PshBI	ATTAAT	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	17
PspPPI	RGGWCCY	1 cut(s)	17
PsrI	GAACNNNNNNTAC	2 cut(s)	177, 209
SaqAI	TTAA	4 cut(s)	198, 333, 354, 458
SatI	GCNGC	1 cut(s)	464
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	57, 114
SetI	ASST	4 cut(s)	22, 207, 241, 246
SfaNI	GCATC	2 cut(s)	377, 462
SfuI	TTCGAA	1 cut(s)	97
SinI	GGWCC	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	3 cut(s)	158, 191, 326
SsiI	CCGC	2 cut(s)	37, 322
SspMI	CTAG	3 cut(s)	66, 78, 491
StyD4I	CCNGG	2 cut(s)	55, 112
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	6 cut(s)	97, 289, 305, 385, 478, 485
TasI	AATT	3 cut(s)	158, 191, 326
TfiI	GAWTC	1 cut(s)	487
Tru1I	TTAA	4 cut(s)	198, 333, 354, 458
Tru9I	TTAA	4 cut(s)	198, 333, 354, 458
TseI	GCWGC	1 cut(s)	463
TspDTI	ATGAA	1 cut(s)	158
TspGWI	ACGGA	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	458
XbaI	TCTAGA	1 cut(s)	490
XspI	CTAG	3 cut(s)	66, 78, 491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.