Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0017960

Physical Location & Seq

Genomic Coordinates Forward (+)

769091 .. 772978

Gene Structure 3888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000168

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTCGCGTTACAGAGGACCTCGTTTCAAAAAAATCCGCCGTCTGGGGGCTTTACCGGGGCTAACTAGTAAAAAGCCTAGAGCCGGAAGCGATCTTCGAACCCAATCGCGCCCCGGCAAAAAATCGCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGCTTTCATTATGGTCTTACGGAACAACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGGTCAACAGGTCAGGTTTTACTACAACTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGCCAATTAGTTAACCACAGGCATATTTTAGTTAATGGTCGTATAGTAGATATACCAAGTTATCGATGCAAACCCAGAGATATTATTACGGTGAAGAATACGGAAAGAGAGGGATTCGAACCCTCGGTAAACAGAAGTCTACATAGCAGTTCCAATGCTACGCCTTCAACCACTCGGCCATCTCTCCTACATAATGATTATGGCTCAAAACCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005840 GO:0006417 GO:0006450 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0015935 GO:0016020 GO:0019222 GO:0019843 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S4 S4

Protein Analysis

180

Amino Acids

20.47

Weight (kDa)

11.1

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S4	PF00163	3 - 88	1.2e-16	Ribosomal protein S4/S9 N-terminal domain
S4	PF01479	89 - 136	1.4e-20	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017960)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG00380
pyrus_communis	pycom12397g00290
rosa_laevigata	RLG00000000043 RLG00000000111 RLG00000000168 RLG00000000226 RLG00000000262 RLG00000000289 RLG00000000295 RLG00000000345 RLG00000037110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	460
AccII	CGCG	2 cut(s)	7, 109
AciI	CCGC	2 cut(s)	37, 322
AcoI	YGGCCR	1 cut(s)	497
AfiI	CCNNNNNNNGG	3 cut(s)	43, 46, 83
AgsI	TTSAA	3 cut(s)	28, 263, 489
AhlI	ACTAGT	1 cut(s)	65
Ama87I	CYCGRG	1 cut(s)	533
AoxI	GGCC	1 cut(s)	497
AspLEI	GCGC	2 cut(s)	111, 165
AspS9I	GGNCC	1 cut(s)	17
AsuC2I	CCSGG	2 cut(s)	57, 114
AsuHPI	GGTGA	1 cut(s)	424
AsuII	TTCGAA	2 cut(s)	97, 438
AvaI	CYCGRG	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	17
BaeI	ACNNNNGTAYC	2 cut(s)	193, 226
BccI	CCATC	1 cut(s)	508
BceAI	ACGGC	1 cut(s)	24
BcnI	CCSGG	2 cut(s)	57, 114
BcuI	ACTAGT	1 cut(s)	65
BfaI	CTAG	2 cut(s)	66, 78
Bme1390I	CCNGG	2 cut(s)	57, 114
Bme18I	GGWCC	1 cut(s)	17
BmeT110I	CYCGRG	1 cut(s)	533
BmgT120I	GGNCC	1 cut(s)	17
BmrFI	CCNGG	2 cut(s)	57, 114
BmsI	GCATC	1 cut(s)	377
Bpu14I	TTCGAA	2 cut(s)	97, 438
BpuEI	CTTGAG	1 cut(s)	300
BpuMI	CCSGG	2 cut(s)	57, 114
Bsa29I	ATCGAT	1 cut(s)	385
BsaJI	CCNNGG	3 cut(s)	56, 112, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	43, 46, 83
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	3 cut(s)	56, 112, 444
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	43, 46, 83
Bsh1236I	CGCG	2 cut(s)	7, 109
BshFI	GGCC	1 cut(s)	499
BshVI	ATCGAT	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	533
BsiSI	CCGG	4 cut(s)	56, 84, 114, 216
BslI	CCNNNNNNNGG	3 cut(s)	43, 46, 83
BsnI	GGCC	1 cut(s)	499
BsoBI	CYCGRG	1 cut(s)	533
Bsp119I	TTCGAA	2 cut(s)	97, 438
Bsp143I	GATC	1 cut(s)	91
BspACI	CCGC	2 cut(s)	37, 322
BspANI	GGCC	1 cut(s)	499
BspDI	ATCGAT	1 cut(s)	385
BspFNI	CGCG	2 cut(s)	7, 109
BspT104I	TTCGAA	2 cut(s)	97, 438
BssECI	CCNNGG	3 cut(s)	56, 112, 444
BssMI	GATC	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	412
BstBI	TTCGAA	2 cut(s)	97, 438
BstC8I	GCNNGC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	2 cut(s)	7, 109
BstHHI	GCGC	2 cut(s)	111, 165
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	55, 112
BstUI	CGCG	2 cut(s)	7, 109
Bsu15I	ATCGAT	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	499
BsuTUI	ATCGAT	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	322
CfoI	GCGC	2 cut(s)	111, 165
Cfr13I	GGNCC	1 cut(s)	17
ClaI	ATCGAT	1 cut(s)	385
CviJI	RGCY	9 cut(s)	50, 61, 76, 83, 224, 302, 320, 499, 525
CviKI_1	RGCY	9 cut(s)	50, 61, 76, 83, 224, 302, 320, 499, 525
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
EaeI	YGGCCR	1 cut(s)	497
EciI	GGCGGA	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	17
Eco88I	CYCGRG	1 cut(s)	533
EcoO109I	RGGNCCY	1 cut(s)	17
FaiI	YATR	8 cut(s)	174, 299, 345, 365, 374, 465, 513, 522
FauI	CCCGC	1 cut(s)	329
FblI	GTMKAC	1 cut(s)	460
FokI	GGATG	1 cut(s)	266
FspBI	CTAG	2 cut(s)	66, 78
GlaI	GCGC	2 cut(s)	110, 164
HaeIII	GGCC	1 cut(s)	499
HapII	CCGG	4 cut(s)	56, 84, 114, 216
HhaI	GCGC	2 cut(s)	111, 165
Hin6I	GCGC	2 cut(s)	109, 163
HinP1I	GCGC	2 cut(s)	109, 163
HincII	GTYRAC	2 cut(s)	234, 334
HindII	GTYRAC	2 cut(s)	234, 334
HinfI	GANTC	1 cut(s)	435
HpaI	GTTAAC	1 cut(s)	334
HpaII	CCGG	4 cut(s)	56, 84, 114, 216
HphI	GGTGA	1 cut(s)	424
Hpy166II	GTNNAC	4 cut(s)	234, 334, 451, 461
Hpy8I	GTNNAC	4 cut(s)	234, 334, 451, 461
HpyAV	CCTTC	1 cut(s)	495
HpyCH4III	ACNGT	1 cut(s)	412
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	1 cut(s)	390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	204
HspAI	GCGC	2 cut(s)	109, 163
KspAI	GTTAAC	1 cut(s)	334
Kzo9I	GATC	1 cut(s)	91
LpnPI	CCDG	9 cut(s)	29, 69, 97, 127, 222, 227, 229, 325, 409
LweI	GCATC	1 cut(s)	377
MaeI	CTAG	2 cut(s)	66, 78
MaeII	ACGT	1 cut(s)	204
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	3 cut(s)	86, 158, 427
MluCI	AATT	3 cut(s)	158, 191, 326
MnlI	CCTC	5 cut(s)	8, 30, 324, 424, 454
MseI	TTAA	3 cut(s)	198, 333, 354
MspI	CCGG	4 cut(s)	56, 84, 114, 216
MspR9I	CCNGG	2 cut(s)	57, 114
MvnI	CGCG	2 cut(s)	7, 109
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	2 cut(s)	57, 114
NdeII	GATC	1 cut(s)	91
NmeAIII	GCCGAG	1 cut(s)	475
NspV	TTCGAA	2 cut(s)	97, 438
PfeI	GAWTC	1 cut(s)	435
PpuMI	RGGWCCY	1 cut(s)	17
Psp5II	RGGWCCY	1 cut(s)	17
PspPI	GGNCC	1 cut(s)	17
PspPPI	RGGWCCY	1 cut(s)	17
PsrI	GAACNNNNNNTAC	2 cut(s)	177, 209
SaqAI	TTAA	3 cut(s)	198, 333, 354
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	17
ScrFI	CCNGG	2 cut(s)	57, 114
SetI	ASST	4 cut(s)	22, 207, 241, 246
SfaNI	GCATC	1 cut(s)	377
SfuI	TTCGAA	2 cut(s)	97, 438
SinI	GGWCC	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
SpeI	ACTAGT	1 cut(s)	65
Sse9I	AATT	3 cut(s)	158, 191, 326
SsiI	CCGC	2 cut(s)	37, 322
SspMI	CTAG	2 cut(s)	66, 78
StyD4I	CCNGG	2 cut(s)	55, 112
TaaI	ACNGT	1 cut(s)	412
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	5 cut(s)	97, 289, 305, 385, 438
TasI	AATT	3 cut(s)	158, 191, 326
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	3 cut(s)	198, 333, 354
Tru9I	TTAA	3 cut(s)	198, 333, 354
TspDTI	ATGAA	1 cut(s)	158
TspGWI	ACGGA	2 cut(s)	197, 437
VpaK11BI	GGWCC	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	460
XspI	CTAG	2 cut(s)	66, 78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.