ATCG01080

NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
OG0020902
Physical Location & Seq
Reverse (-)
118377 .. 118907
531 bp
Loading structure...
UTR
Exon/CDS
Intron
ATCG01080.1

Sequence Viewer

Length: 531 bp
ATGGATTTGCCTGGACCAATACATGATTTTCTTTTAGTTTTTCTGGGATCCGGTCTTCTAGTAGGGGGTCTGGGAGTGGTATTACTTCCCAACCCAATATTTTCAGCCTTTTCCTTAGGATTTGTTCTTGTTTGTATATCTTTATTGTATATTCTATCAAATTCCCATTTTGTAGCTGCTGCACAACTCCTTATTTATGTGGGGGCCATAAATGTTTTAATCATATTTGCTGTGATGTTCATGAATGATTCAGAATATTCCACAGATTTCAATCTGTGGACCATTGGGAATGGGATTACTTCGTTGGTTTGTACAACTATTCTTTTTTTATTAATGTCTACTATTCTCGATACGTCATGGTACGGGGTTATTTGGACTACAAAATTAAACCAGATTCTAGAGCAAGATTTAATAAGTAATAGTCAACAAATAGGAATTCATTTATCAACAGATTTTTTTCTGCCATTTGAACTCATTTCAATAATTCTTTTAGTTGCTTTGATAGGTGCAATTTCTGTGGCTCGTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0008152 GO:0009987 GO:0015979 GO:0044237
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 map00190 map01100
Pfam Domains
Protein Families
Oxidored_q3

Protein Analysis

176

Amino Acids

19.21

Weight (kDa)

4.19

Isoelectric Point (pI)

25.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Oxidored_q3 PF00499 23 - 172 1.5e-34 NADH-ubiquinone/plastoquinone oxidoreductase chain 6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020902)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01080
pyrus_communis pycom16g17780
rosa_chinensis RchiOBHm_Chr5g0017201 RchiOBHm_Chr5g0043021 RchiOBHm_CPg0502761

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 338
AclWI GGATC 2 cut(s) 42, 55
AcsI RAATTY 2 cut(s) 160, 435
AfaI GTAC 2 cut(s) 313, 362
AgsI TTSAA 3 cut(s) 271, 470, 480
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
AlwI GGATC 2 cut(s) 42, 55
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 176, 179
ApoI RAATTY 2 cut(s) 160, 435
AseI ATTAAT 1 cut(s) 332
AspS9I GGNCC 3 cut(s) 14, 204, 279
AvaII GGWCC 2 cut(s) 14, 279
AxyI CCTNAGG 1 cut(s) 115
BamHI GGATCC 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 47
BbvI GCAGC 2 cut(s) 163, 166
BciT130I CCWGG 1 cut(s) 12
BfaI CTAG 2 cut(s) 59, 398
BisI GCNGC 2 cut(s) 177, 180
BlsI GCNGC 2 cut(s) 178, 181
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 2 cut(s) 14, 279
BmgT120I GGNCC 3 cut(s) 14, 204, 279
BmiI GGNNCC 2 cut(s) 49, 205
BmrFI CCNGG 1 cut(s) 12
BpiI GAAGAC 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 50
Bse21I CCTNAGG 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 270
BseBI CCWGG 1 cut(s) 12
BseJI GATNNNNATC 1 cut(s) 270
BseXI GCAGC 2 cut(s) 163, 166
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 206
BsiSI CCGG 1 cut(s) 51
BsnI GGCC 1 cut(s) 206
Bsp1407I TGTACA 1 cut(s) 311
Bsp143I GATC 1 cut(s) 47
BspANI GGCC 1 cut(s) 206
BspHI TCATGA 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 49, 205
BspPI GGATC 2 cut(s) 42, 55
BsrGI TGTACA 1 cut(s) 311
BssMI GATC 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 12
BstAUI TGTACA 1 cut(s) 311
BstDEI CTNAG 1 cut(s) 115
BstKTI GATC 1 cut(s) 50
BstMBI GATC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 163, 166
BstV2I GAAGAC 1 cut(s) 47
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
Bsu36I CCTNAGG 1 cut(s) 115
BsuRI GGCC 1 cut(s) 206
CciI TCATGA 1 cut(s) 240
Cfr13I GGNCC 3 cut(s) 14, 204, 279
Csp6I GTAC 2 cut(s) 312, 361
CspCI CAANNNNNGTGG 1 cut(s) 498
CviAII CATG 3 cut(s) 23, 241, 357
CviJI RGCY 4 cut(s) 107, 176, 206, 521
CviKI_1 RGCY 4 cut(s) 107, 176, 206, 521
CviQI GTAC 2 cut(s) 312, 361
DdeI CTNAG 1 cut(s) 115
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 14, 279
Eco81I CCTNAGG 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 10
FaeI CATG 3 cut(s) 26, 244, 360
FaiI YATR 8 cut(s) 24, 137, 150, 198, 209, 224, 242, 358
FatI CATG 3 cut(s) 22, 240, 356
FblI GTMKAC 1 cut(s) 338
Fnu4HI GCNGC 2 cut(s) 177, 180
Fsp4HI GCNGC 2 cut(s) 177, 180
FspBI CTAG 2 cut(s) 59, 398
GluI GCNGC 2 cut(s) 177, 180
HaeIII GGCC 1 cut(s) 206
HapII CCGG 1 cut(s) 51
Hin1II CATG 3 cut(s) 26, 244, 360
HincII GTYRAC 1 cut(s) 425
HindII GTYRAC 1 cut(s) 425
HinfI GANTC 2 cut(s) 248, 394
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 3 cut(s) 279, 339, 425
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 3 cut(s) 241, 347, 398
Hpy8I GTNNAC 3 cut(s) 279, 339, 425
HpyCH4IV ACGT 1 cut(s) 353
HpyCH4V TGCA 2 cut(s) 182, 509
HpyF3I CTNAG 1 cut(s) 115
HpySE526I ACGT 1 cut(s) 353
Hsp92II CATG 3 cut(s) 26, 244, 360
Kzo9I GATC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 24, 29, 56, 64, 404
Lsp1109I GCAGC 2 cut(s) 163, 166
MaeI CTAG 2 cut(s) 59, 398
MaeII ACGT 1 cut(s) 353
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MboII GAAGA 1 cut(s) 47
MflI RGATCY 1 cut(s) 47
MluCI AATT 5 cut(s) 160, 383, 435, 483, 510
MseI TTAA 4 cut(s) 218, 332, 386, 410
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
NdeII GATC 1 cut(s) 47
NlaIII CATG 3 cut(s) 26, 244, 360
NlaIV GGNNCC 2 cut(s) 49, 205
PagI TCATGA 1 cut(s) 240
PfeI GAWTC 2 cut(s) 248, 394
PkrI GCNGC 2 cut(s) 178, 181
PshBI ATTAAT 1 cut(s) 332
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 49, 205
PspPI GGNCC 3 cut(s) 14, 204, 279
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 2 cut(s) 313, 362
RsaNI GTAC 2 cut(s) 312, 361
SaqAI TTAA 4 cut(s) 218, 332, 386, 410
SatI GCNGC 2 cut(s) 177, 180
Sau3AI GATC 1 cut(s) 47
Sau96I GGNCC 3 cut(s) 14, 204, 279
ScrFI CCNGG 1 cut(s) 12
SetI ASST 3 cut(s) 178, 356, 508
SinI GGWCC 2 cut(s) 14, 279
Sse9I AATT 5 cut(s) 160, 383, 435, 483, 510
SspI AATATT 2 cut(s) 99, 257
SspMI CTAG 2 cut(s) 59, 398
StyD4I CCNGG 1 cut(s) 10
TaiI ACGT 1 cut(s) 356
TaqI TCGA 1 cut(s) 348
TasI AATT 5 cut(s) 160, 383, 435, 483, 510
TatI WGTACW 1 cut(s) 311
TfiI GAWTC 2 cut(s) 248, 394
Tru1I TTAA 4 cut(s) 218, 332, 386, 410
Tru9I TTAA 4 cut(s) 218, 332, 386, 410
TseI GCWGC 2 cut(s) 176, 179
TspDTI ATGAA 3 cut(s) 229, 257, 428
VpaK11BI GGWCC 2 cut(s) 14, 279
VspI ATTAAT 1 cut(s) 332
XapI RAATTY 2 cut(s) 160, 435
XbaI TCTAGA 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 338
XspI CTAG 2 cut(s) 59, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.