pycom16g17780

Belongs to the complex I subunit 6 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
14051035 .. 14051271
237 bp
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UTR
Exon/CDS
Intron
pycom16g17780.1

Sequence Viewer

Length: 237 bp
ATGTTCATGAATGGTTCACAATATTACAAAGATTTGAATCTTTGGACCATTGGGGATGTGGTTACTTTGCCAGTTTGTACAAGGATTTTTGTTTTACTCATGATTATTATTATGGATACGTCATGGTATGGAATTATTTGGACTACAAGATCAAACCAGATTATAGAGCAAGATTTGATAAGTAATAGTCAACAAATTGGAATTCATTTATCAACATATTTTTTTTCTTCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

79

Amino Acids

9.1

Weight (kDa)

4.75

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020902)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01080
pyrus_communis pycom16g17780
rosa_chinensis RchiOBHm_Chr5g0017201 RchiOBHm_Chr5g0043021 RchiOBHm_CPg0502761

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 1 cut(s) 79
AgsI TTSAA 1 cut(s) 37
ApoI RAATTY 1 cut(s) 201
AspS9I GGNCC 1 cut(s) 45
AvaII GGWCC 1 cut(s) 45
BciVI GTATCC 1 cut(s) 109
BfuI GTATCC 1 cut(s) 109
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 45
BsaBI GATNNNNATC 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 71
Bse8I GATNNNNATC 1 cut(s) 36
BseGI GGATG 1 cut(s) 61
BseJI GATNNNNATC 1 cut(s) 36
BseNI ACTGG 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 77
Bsp143I GATC 1 cut(s) 149
BspHI TCATGA 2 cut(s) 6, 99
BsrGI TGTACA 1 cut(s) 77
BsrI ACTGG 1 cut(s) 71
BssMI GATC 1 cut(s) 149
BstAUI TGTACA 1 cut(s) 77
BstF5I GGATG 1 cut(s) 61
BstKTI GATC 1 cut(s) 152
BstMBI GATC 1 cut(s) 149
BsuI GTATCC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 61
CciI TCATGA 2 cut(s) 6, 99
Cfr13I GGNCC 1 cut(s) 45
Csp6I GTAC 1 cut(s) 78
CviAII CATG 3 cut(s) 7, 100, 123
CviQI GTAC 1 cut(s) 78
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 201
FaeI CATG 3 cut(s) 10, 103, 126
FaiI YATR 7 cut(s) 8, 101, 113, 124, 129, 164, 217
FatI CATG 3 cut(s) 6, 99, 122
FokI GGATG 1 cut(s) 68
Hin1II CATG 3 cut(s) 10, 103, 126
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HinfI GANTC 1 cut(s) 37
Hpy166II GTNNAC 2 cut(s) 17, 191
Hpy188III TCNNGA 2 cut(s) 7, 100
Hpy8I GTNNAC 2 cut(s) 17, 191
HpyCH4IV ACGT 1 cut(s) 119
HpySE526I ACGT 1 cut(s) 119
Hsp92II CATG 3 cut(s) 10, 103, 126
Kzo9I GATC 1 cut(s) 149
LpnPI CCDG 2 cut(s) 84, 170
MaeII ACGT 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MboII GAAGA 1 cut(s) 219
MluCI AATT 3 cut(s) 132, 195, 201
NdeII GATC 1 cut(s) 149
NlaIII CATG 3 cut(s) 10, 103, 126
PagI TCATGA 2 cut(s) 6, 99
PfeI GAWTC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 45
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
Sau3AI GATC 1 cut(s) 149
Sau96I GGNCC 1 cut(s) 45
SetI ASST 1 cut(s) 122
SgeI CNNG 8 cut(s) 19, 83, 93, 112, 135, 159, 169, 182
SinI GGWCC 1 cut(s) 45
Sse9I AATT 3 cut(s) 132, 195, 201
SspI AATATT 1 cut(s) 23
TaiI ACGT 1 cut(s) 122
TasI AATT 3 cut(s) 132, 195, 201
TatI WGTACW 1 cut(s) 77
TfiI GAWTC 1 cut(s) 37
TspDTI ATGAA 2 cut(s) 23, 194
VpaK11BI GGWCC 1 cut(s) 45
XapI RAATTY 1 cut(s) 201
XcmI CCANNNNNNNNNTGG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.