ATCG01100

NDH shuttles electrons from NAD(P)H plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Pt
OG0020254
Physical Location & Seq
Reverse (-)
119847 .. 122009
2163 bp
Loading structure...
UTR
Exon/CDS
Intron
ATCG01100.1

Sequence Viewer

Length: 1083 bp
ATGATAATTTATGCAACAGCAGTCCAAACTATAAATTCTTTTGTTAAATTGGAATCTTTAAAAGAGGTCTATGGACTCATATGGATATTTGTCCCTATATTTTCTCTTGTATTGGGAATCATAACAGGTGTACTAGTAATTGTGTGGTTAGAAAGAGAAATATCTGCAGGGATACAACAACGTATTGGACCTGAATACGCCGGCCCGTTGGGAATTCTTCAAGCTCTAGCCGATGGGACAAAACTACTTTTCAAAGAAAATCTTCGTCCATCTAGAGGAAATACTCCTTTATTTAGTATTGGACCATCTATAGCAGTTATCTCTATTTTACTAAGTTATTCAGTAATTCCCTTTAGCAATCACCTTGTTTTAGCGGATCTCAATATCGGTATTTTTTTATGGATTGCCATCTCAAGTATTGCTCCTATTGGACTTCTTATGTCAGGATATGGATCAAATAATAAATATTCTTTTTTAGGTGGTCTGCGAGCTGCTGCCCAATCGATTAGTTATGAAATACCATTAACTCTATGTGTTTTATCAATATCTCTACTATCTAACAGTTTAAGTACAGTTGATATAGTTGAGGCACAATCAAAATATGGTTTTTGGGGATGGAATTTGTGGCGTCAACCTATAGGTTTTATCATTTTTCTAATTTCTTCCCTAGCAGAATGCGAGAGGTTACCGTTTGATTTACCAGAAGCGGAAGAAGAATTAATAGCAGGTTATCAAACTGAATATTCAGGTATAAAATTTGGTTTATTTTACGTTGCTTCTTATCTAAATCTATTAATTTCCTCATTATTTGTAACAGTTCTATACTTAGGCGGTTGGAATATTTCTATTCCGTATATATCTATTCTGGAGCTATTTCAAAGGGATCAAATTTTTGGAACAACAATTGGTATCTTTATTACATTAGCTAAAACTTATTTGTTTTTGTTCGTTTCTATCGCAACAAGATGGACTTTACCTAGGCTAAGAATGGATCAACTATTAAATCTTGGATGGAAATTTCTTTTACCTATTTCCCTTGGTAATCTATTATTAACCACTTCTTTCCAACTCTTTTCACTCTAA

Protein Analysis

360

Amino Acids

40.02

Weight (kDa)

5.57

Isoelectric Point (pI)

35.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NADHdh PF00146 34 - 352 2.7e-110 NADH dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020254)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01100
pyrus_communis pycom16g17800
rosa_chinensis RchiOBHm_Chr3g0470801 RchiOBHm_CPg0502741
rosa_samantha Rh3BG187600 Rh3CG177600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 716
AciI CCGC 3 cut(s) 374, 707, 831
AclWI GGATC 4 cut(s) 384, 460, 891, 999
AcsI RAATTY 6 cut(s) 34, 213, 619, 755, 888, 1016
AcyI GRCGYC 1 cut(s) 628
AfaI GTAC 2 cut(s) 132, 571
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 3 cut(s) 221, 253, 878
AhlI ACTAGT 1 cut(s) 133
AluBI AGCT 4 cut(s) 224, 491, 871, 926
AluI AGCT 4 cut(s) 224, 491, 871, 926
AlwI GGATC 4 cut(s) 384, 460, 891, 999
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 2 cut(s) 491, 494
ApoI RAATTY 6 cut(s) 34, 213, 619, 755, 888, 1016
AseI ATTAAT 2 cut(s) 719, 794
Asp700I GAANNNNTTC 1 cut(s) 261
AspA2I CCTAGG 1 cut(s) 977
AspS9I GGNCC 3 cut(s) 188, 203, 302
AsuHPI GGTGA 1 cut(s) 353
AvaII GGWCC 2 cut(s) 188, 302
AvrII CCTAGG 1 cut(s) 977
BbvI GCAGC 2 cut(s) 478, 481
BccI CCATC 7 cut(s) 227, 277, 313, 416, 609, 960, 1005
BciVI GTATCC 1 cut(s) 165
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 5 cut(s) 134, 227, 273, 668, 978
BfmI CTRYAG 3 cut(s) 165, 309, 636
BfuAI ACCTGC 1 cut(s) 716
BfuI GTATCC 1 cut(s) 165
BisI GCNGC 2 cut(s) 492, 495
BlnI CCTAGG 1 cut(s) 977
BlsI GCNGC 2 cut(s) 493, 496
Bme18I GGWCC 2 cut(s) 188, 302
BmgT120I GGNCC 3 cut(s) 188, 203, 302
BpmI CTGGAG 1 cut(s) 887
BpuEI CTTGAG 1 cut(s) 397
Bsa29I ATCGAT 1 cut(s) 503
BsaBI GATNNNNATC 2 cut(s) 407, 451
BsaHI GRCGYC 1 cut(s) 628
BsaJI CCNNGG 2 cut(s) 977, 1036
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 200
Bse8I GATNNNNATC 2 cut(s) 407, 451
BseCI ATCGAT 1 cut(s) 503
BseDI CCNNGG 2 cut(s) 977, 1036
BseGI GGATG 2 cut(s) 620, 1016
BseJI GATNNNNATC 2 cut(s) 407, 451
BseLI CCNNNNNNNGG 1 cut(s) 275
BseXI GCAGC 2 cut(s) 478, 481
BshFI GGCC 1 cut(s) 204
BshVI ATCGAT 1 cut(s) 503
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 2 cut(s) 77, 250
BslI CCNNNNNNNGG 1 cut(s) 275
BsmFI GGGAC 2 cut(s) 77, 250
BsmI GAATGC 1 cut(s) 680
BsnI GGCC 1 cut(s) 204
Bsp143I GATC 4 cut(s) 376, 452, 883, 991
BspACI CCGC 3 cut(s) 374, 707, 831
BspANI GGCC 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 503
BspMAI CTGCAG 1 cut(s) 169
BspMI ACCTGC 1 cut(s) 716
BspPI GGATC 4 cut(s) 384, 460, 891, 999
BsrFI RCCGGY 1 cut(s) 200
BssAI RCCGGY 1 cut(s) 200
BssECI CCNNGG 2 cut(s) 977, 1036
BssMI GATC 4 cut(s) 376, 452, 883, 991
BssNI GRCGYC 1 cut(s) 628
BssT1I CCWWGG 2 cut(s) 977, 1036
Bst4CI ACNGT 4 cut(s) 563, 574, 690, 817
BstACI GRCGYC 1 cut(s) 628
BstC8I GCNNGC 2 cut(s) 202, 489
BstDEI CTNAG 3 cut(s) 332, 826, 983
BstEII GGTNACC 1 cut(s) 684
BstF5I GGATG 2 cut(s) 620, 1016
BstKTI GATC 4 cut(s) 379, 455, 886, 994
BstMBI GATC 4 cut(s) 376, 452, 883, 991
BstPI GGTNACC 1 cut(s) 684
BstSFI CTRYAG 3 cut(s) 165, 309, 636
BstV1I GCAGC 2 cut(s) 478, 481
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
Bsu15I ATCGAT 1 cut(s) 503
BsuI GTATCC 1 cut(s) 165
BsuRI GGCC 1 cut(s) 204
BsuTUI ATCGAT 1 cut(s) 503
BtsCI GGATG 2 cut(s) 620, 1016
BveI ACCTGC 1 cut(s) 716
Cac8I GCNNGC 2 cut(s) 202, 489
Cfr10I RCCGGY 1 cut(s) 200
Cfr13I GGNCC 3 cut(s) 188, 203, 302
ClaI ATCGAT 1 cut(s) 503
CseI GACGC 1 cut(s) 617
Csp6I GTAC 2 cut(s) 131, 570
CviJI RGCY 7 cut(s) 204, 224, 230, 491, 871, 926, 982
CviKI_1 RGCY 7 cut(s) 204, 224, 230, 491, 871, 926, 982
CviQI GTAC 2 cut(s) 131, 570
DdeI CTNAG 3 cut(s) 332, 826, 983
DpnI GATC 4 cut(s) 378, 454, 885, 993
DpnII GATC 4 cut(s) 376, 452, 883, 991
DraI TTTAAA 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 977, 1036
Eco47I GGWCC 2 cut(s) 188, 302
Eco91I GGTNACC 1 cut(s) 684
EcoO65I GGTNACC 1 cut(s) 684
EcoRI GAATTC 1 cut(s) 213
EcoT14I CCWWGG 2 cut(s) 977, 1036
ErhI CCWWGG 2 cut(s) 977, 1036
FalI AAGNNNNNCTT 4 cut(s) 246, 278, 955, 987
FaqI GGGAC 2 cut(s) 77, 250
FauNDI CATATG 1 cut(s) 80
Fnu4HI GCNGC 2 cut(s) 492, 495
FokI GGATG 2 cut(s) 627, 1023
Fsp4HI GCNGC 2 cut(s) 492, 495
FspBI CTAG 5 cut(s) 134, 227, 273, 668, 978
GluI GCNGC 2 cut(s) 492, 495
GsuI CTGGAG 1 cut(s) 887
HaeIII GGCC 1 cut(s) 204
HapII CCGG 1 cut(s) 201
HgaI GACGC 1 cut(s) 617
Hin1I GRCGYC 1 cut(s) 628
HincII GTYRAC 1 cut(s) 632
HindII GTYRAC 1 cut(s) 632
HinfI GANTC 3 cut(s) 53, 75, 117
HpaII CCGG 1 cut(s) 201
HphI GGTGA 1 cut(s) 353
Hpy166II GTNNAC 2 cut(s) 131, 632
Hpy188III TCNNGA 3 cut(s) 273, 444, 866
Hpy8I GTNNAC 2 cut(s) 131, 632
HpyCH4III ACNGT 4 cut(s) 563, 574, 690, 817
HpyCH4IV ACGT 2 cut(s) 181, 771
HpyCH4V TGCA 2 cut(s) 14, 167
HpyF3I CTNAG 3 cut(s) 332, 826, 983
HpySE526I ACGT 2 cut(s) 181, 771
Hsp92I GRCGYC 1 cut(s) 628
KroI GCCGGC 1 cut(s) 200
KroNI GCCGGC 1 cut(s) 202
Kzo9I GATC 4 cut(s) 376, 452, 883, 991
LmnI GCTCC 2 cut(s) 427, 868
LpnPI CCDG 9 cut(s) 111, 153, 204, 214, 429, 711, 714, 732, 851
Lsp1109I GCAGC 2 cut(s) 478, 481
MaeI CTAG 5 cut(s) 134, 227, 273, 668, 978
MaeII ACGT 2 cut(s) 181, 771
MaeIII GTNAC 2 cut(s) 684, 811
MalI GATC 4 cut(s) 378, 454, 885, 993
MboI GATC 4 cut(s) 376, 452, 883, 991
MboII GAAGA 5 cut(s) 209, 254, 654, 722, 725
MfeI CAATTG 1 cut(s) 903
MflI RGATCY 1 cut(s) 376
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 1 cut(s) 815
MnlI CCTC 5 cut(s) 58, 269, 580, 675, 811
MroNI GCCGGC 1 cut(s) 200
MroXI GAANNNNTTC 1 cut(s) 261
MseI TTAA 8 cut(s) 45, 59, 524, 566, 719, 794, 1001, 1052
MspI CCGG 1 cut(s) 201
MunI CAATTG 1 cut(s) 903
Mva1269I GAATGC 1 cut(s) 680
NaeI GCCGGC 1 cut(s) 202
NdeI CATATG 1 cut(s) 80
NdeII GATC 4 cut(s) 376, 452, 883, 991
NgoMIV GCCGGC 1 cut(s) 200
PctI GAATGC 1 cut(s) 680
PdiI GCCGGC 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 2 cut(s) 53, 117
PkrI GCNGC 2 cut(s) 493, 496
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
PshBI ATTAAT 2 cut(s) 719, 794
PspEI GGTNACC 1 cut(s) 684
PspPI GGNCC 3 cut(s) 188, 203, 302
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 2 cut(s) 132, 571
RsaNI GTAC 2 cut(s) 131, 570
SaqAI TTAA 8 cut(s) 45, 59, 524, 566, 719, 794, 1001, 1052
SatI GCNGC 2 cut(s) 492, 495
Sau3AI GATC 4 cut(s) 376, 452, 883, 991
Sau96I GGNCC 3 cut(s) 188, 203, 302
SchI GAGTC 1 cut(s) 69
SfcI CTRYAG 3 cut(s) 165, 309, 636
SinI GGWCC 2 cut(s) 188, 302
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
SpeI ACTAGT 1 cut(s) 133
SsiI CCGC 3 cut(s) 374, 707, 831
SspI AATATT 3 cut(s) 467, 743, 841
SspMI CTAG 5 cut(s) 134, 227, 273, 668, 978
StyI CCWWGG 2 cut(s) 977, 1036
TaaI ACNGT 4 cut(s) 563, 574, 690, 817
TaiI ACGT 2 cut(s) 184, 774
TaqI TCGA 1 cut(s) 503
TatI WGTACW 2 cut(s) 130, 569
TfiI GAWTC 2 cut(s) 53, 117
Tru1I TTAA 8 cut(s) 45, 59, 524, 566, 719, 794, 1001, 1052
Tru9I TTAA 8 cut(s) 45, 59, 524, 566, 719, 794, 1001, 1052
TseI GCWGC 2 cut(s) 491, 494
TspDTI ATGAA 1 cut(s) 528
TspGWI ACGGA 1 cut(s) 840
VpaK11BI GGWCC 2 cut(s) 188, 302
VspI ATTAAT 2 cut(s) 719, 794
XapI RAATTY 6 cut(s) 34, 213, 619, 755, 888, 1016
XbaI TCTAGA 1 cut(s) 272
XmaJI CCTAGG 1 cut(s) 977
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 5 cut(s) 134, 227, 273, 668, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.