RchiOBHm_Chr3g0470801

NAD(P)H-quinone oxidoreductase subunit 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0020254
Physical Location & Seq
Reverse (-)
16766719 .. 16767288
570 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43656

Sequence Viewer

Length: 570 bp
ATGATAATTGATACACCAGAAGTACAAGATATCGATTCTTTTTCTAGATTGAAATTTTTAAAAGGGGTCTATGGAATTATATGGTTACTTATTCCTATTTTGACTCTTGTATTGGGAATCACAATAGGCGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGCGGGAATACAACAGCGTATTGGACCTGAATACGCTGGTCCTTTGGGAGTTTTTCAAGCTCTAGCAGATGGGACAGAACTTCTTTTCAAAGAAAATCTTTTTCCATCTAGAAGGGATACTCGTTTATTCAGTATCGGTCCATCCATAGCAGTGATATCAATTTTAGTAAGCTATTTAGTAGTTCCGTTTGGTTATCGCCTTGTTTTAGCGGATCTCAATATTGGTGTTTTTTTATGGATTGCTATTTCAAGTATTGCTCCCATTGGACTTCTTATGTCAGGATACGGGTCAAATAATAAATATTCCTTTTTAGGTGGTCTACGAGTTGCTGCTCAATCGATTAGTTATGAAATACCATTAACTTATTTATGTGTGTTATCAATATCTCTACGTGCGATTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NADHdh

Protein Analysis

189

Amino Acids

20.76

Weight (kDa)

7.81

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NADHdh PF00146 33 - 181 3.9e-46 NADH dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020254)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01100
pyrus_communis pycom16g17800
rosa_chinensis RchiOBHm_Chr3g0470801 RchiOBHm_CPg0502741
rosa_samantha Rh3BG187600 Rh3CG177600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 484
AccII CGCG 1 cut(s) 167
AciI CCGC 3 cut(s) 165, 167, 374
AclWI GGATC 1 cut(s) 384
AcsI RAATTY 1 cut(s) 53
AfaI GTAC 2 cut(s) 24, 132
AgsI TTSAA 4 cut(s) 52, 221, 253, 414
AhlI ACTAGT 1 cut(s) 133
AluBI AGCT 2 cut(s) 224, 336
AluI AGCT 2 cut(s) 224, 336
AlwI GGATC 1 cut(s) 384
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 1 cut(s) 53
AspS9I GGNCC 3 cut(s) 188, 203, 302
AvaII GGWCC 3 cut(s) 188, 203, 302
BbvI GCAGC 1 cut(s) 481
BccI CCATC 3 cut(s) 227, 277, 313
BciVI GTATCC 2 cut(s) 274, 440
BcuI ACTAGT 1 cut(s) 133
BfaI CTAG 4 cut(s) 45, 134, 227, 273
BfuI GTATCC 2 cut(s) 274, 440
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme18I GGWCC 3 cut(s) 188, 203, 302
BmgT120I GGNCC 3 cut(s) 188, 203, 302
Bsa29I ATCGAT 2 cut(s) 33, 503
BsaAI YACGTR 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 165
BseCI ATCGAT 2 cut(s) 33, 503
BseDI CCNNGG 1 cut(s) 165
BseGI GGATG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 481
Bsh1236I CGCG 1 cut(s) 167
BshVI ATCGAT 2 cut(s) 33, 503
BslFI GGGAC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 250
Bsp143I GATC 1 cut(s) 376
BspACI CCGC 3 cut(s) 165, 167, 374
BspDI ATCGAT 2 cut(s) 33, 503
BspFNI CGCG 1 cut(s) 167
BspPI GGATC 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 557
BstDSI CCRYGG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 305
BstFNI CGCG 1 cut(s) 167
BstKTI GATC 1 cut(s) 379
BstMBI GATC 1 cut(s) 376
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 376
BstYI RGATCY 1 cut(s) 376
Bsu15I ATCGAT 2 cut(s) 33, 503
BsuI GTATCC 2 cut(s) 274, 440
BsuTUI ATCGAT 2 cut(s) 33, 503
BtgI CCRYGG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 305
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
Cfr13I GGNCC 3 cut(s) 188, 203, 302
Cfr42I CCGCGG 1 cut(s) 168
ClaI ATCGAT 2 cut(s) 33, 503
Csp6I GTAC 2 cut(s) 23, 131
CviJI RGCY 2 cut(s) 224, 336
CviKI_1 RGCY 2 cut(s) 224, 336
CviQI GTAC 2 cut(s) 23, 131
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
DraI TTTAAA 1 cut(s) 60
Eco32I GATATC 2 cut(s) 31, 321
Eco47I GGWCC 3 cut(s) 188, 203, 302
EcoRV GATATC 2 cut(s) 31, 321
FaiI YATR 9 cut(s) 72, 80, 82, 145, 311, 400, 440, 513, 535
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FaqI GGGAC 1 cut(s) 250
FauI CCCGC 1 cut(s) 160
FblI GTMKAC 1 cut(s) 484
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 4 cut(s) 45, 134, 227, 273
GluI GCNGC 1 cut(s) 495
HinfI GANTC 4 cut(s) 35, 103, 117, 562
Hpy166II GTNNAC 1 cut(s) 485
Hpy188III TCNNGA 3 cut(s) 45, 273, 444
Hpy8I GTNNAC 1 cut(s) 485
HpyAV CCTTC 1 cut(s) 270
HpyCH4IV ACGT 1 cut(s) 556
HpySE526I ACGT 1 cut(s) 556
KspI CCGCGG 1 cut(s) 168
Kzo9I GATC 1 cut(s) 376
LmnI GCTCC 1 cut(s) 427
LpnPI CCDG 4 cut(s) 30, 186, 204, 429
Lsp1109I GCAGC 1 cut(s) 481
MaeI CTAG 4 cut(s) 45, 134, 227, 273
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 1 cut(s) 84
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MflI RGATCY 1 cut(s) 376
MluCI AATT 5 cut(s) 6, 53, 75, 138, 324
MlyI GAGTC 1 cut(s) 97
MseI TTAA 2 cut(s) 59, 524
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 167
MvnI CGCG 1 cut(s) 167
NdeII GATC 1 cut(s) 376
PcsI WCGNNNNNNNCGW 1 cut(s) 562
PfeI GAWTC 3 cut(s) 35, 117, 562
PkrI GCNGC 1 cut(s) 496
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 557
PspPI GGNCC 3 cut(s) 188, 203, 302
PsuI RGATCY 1 cut(s) 376
RsaI GTAC 2 cut(s) 24, 132
RsaNI GTAC 2 cut(s) 23, 131
RseI CAYNNNNRTG 1 cut(s) 314
SacII CCGCGG 1 cut(s) 168
SaqAI TTAA 2 cut(s) 59, 524
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 3 cut(s) 188, 203, 302
SchI GAGTC 1 cut(s) 97
SetI ASST 5 cut(s) 193, 226, 338, 481, 559
Sfr303I CCGCGG 1 cut(s) 168
SgrBI CCGCGG 1 cut(s) 168
SinI GGWCC 3 cut(s) 188, 203, 302
SmiMI CAYNNNNRTG 1 cut(s) 314
SpeI ACTAGT 1 cut(s) 133
Sse9I AATT 5 cut(s) 6, 53, 75, 138, 324
SsiI CCGC 3 cut(s) 165, 167, 374
SspI AATATT 2 cut(s) 385, 467
SspMI CTAG 4 cut(s) 45, 134, 227, 273
TaiI ACGT 1 cut(s) 559
TaqI TCGA 2 cut(s) 33, 503
TaqII GACCGA 1 cut(s) 290
TasI AATT 5 cut(s) 6, 53, 75, 138, 324
TatI WGTACW 1 cut(s) 22
TfiI GAWTC 3 cut(s) 35, 117, 562
Tru1I TTAA 2 cut(s) 59, 524
Tru9I TTAA 2 cut(s) 59, 524
TscAI CASTG 1 cut(s) 321
TseI GCWGC 1 cut(s) 494
TspDTI ATGAA 1 cut(s) 528
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 1 cut(s) 321
VpaK11BI GGWCC 3 cut(s) 188, 203, 302
XapI RAATTY 1 cut(s) 53
XbaI TCTAGA 2 cut(s) 44, 272
XmiI GTMKAC 1 cut(s) 484
XspI CTAG 4 cut(s) 45, 134, 227, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.