Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021891

Physical Location & Seq

Genomic Coordinates Reverse (-)

122011 .. 123192

Gene Structure 1182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATCG01110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGAAGAGACCAGTTACAGGAAAAGATCTTATGATAGTCAATATGGGACCTCACCACCCATCCATGCATGGTGTTCTTCGCTTAATTGTTACTCTAGATGGTGAGGATGTTGTTGACTGTGAACCCATATTAGGTTATTTACACAGAGGAATGGAAAAAATTGCAGAAAACCGAGCAATTATACAATATTTACCGTATGTAACGCGATGGGATTATTTAGCTACTATGTTTACAGAAGCAATAACAGTAAATGGACCAGAACAATTGGGAAATATTCAAGTTCCTAAAAGGGCCAGCTATATCAGAGTAATTATGCTGGAATTGAGTCGTATAGCTTCTCATCTGTTATGGCTCGGCCCTTTTATGGCAGATATTGGTGCACAGACTCCCTTTTTCTATATTTTCAGAGAACGAGAATTTGTATATGATCTATTCGAAGCTGCCACCGGTATGAGAATGATGCATAATTTTTTTCGTATTGGAGGAATAGCGGCTGATTTACCTTATGGTTGGATAGATAAATGCTTGGATTTTTGTGATTATTTTTTAACAGAGGTTGTTGAATATCAAAAACTCATTACACGAAATCCTATTTTTTTAGAACGGGTTGAAGGAGTTGGGATTATTGGTGGGGAAGAAGCAATAAATTGGGGTTTATCCGGACCAATGCTACGCGCATCCGGAATACCATGGGATCTTCGTAAAATTGATCGTTATGAGTCTTACGATGAATTTGAATGGGAAATTCAATGGCAAAAACAAGGAGATTCATTAGCTCGTTATTTAGTACGACTTAGCGAAATGACAGAATCCATAAAAATTATTCAACAGGCTCTGGAAGGACTTCCAGGGGGTCCCTATGAGAATTTAGAAAGCAGGGGCTTTGATAGAAAAAGGAATCCAGAATGGAATGATTTTGAATATCGATTCATTAGTAAAAAACCTTCTCCTACTTTTGAATTATCAAAACAAGAACTTTATGTAAGAGTTGAAGCTCCAAAAGGGGAGTTGGGAATTTTTCTCATAGGAGATCAAAGCGGTTTTCCTTGGAGATGGAAAATACGACCACCGGGTTTTATTAATTTGCAAATTCTTCCTGAACTAGTTAAAAGAATGAAATTGGCTGATATTATGACGATACTCGGTAGCATAGATATAATTATGGGAGAAGTTGATCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0055035 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_49kDa NADHdh

Protein Analysis

393

Amino Acids

45.5

Weight (kDa)

5.4

Isoelectric Point (pI)

37.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_49kDa	PF00346	124 - 393	2.1e-99	Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0021891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG01110
fragaria_vesca	FvH4_6g41620 FvH4_c3g00020
pyrus_communis	pycom06g06230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	205, 675
AccIII	TCCGGA	2 cut(s)	659, 680
AciI	CCGC	2 cut(s)	491, 1038
AclWI	GGATC	1 cut(s)	702
AcsI	RAATTY	6 cut(s)	416, 731, 744, 865, 1014, 1089
AfaI	GTAC	1 cut(s)	789
AfiI	CCNNNNNNNGG	3 cut(s)	17, 131, 364
AgeI	ACCGGT	1 cut(s)	446
AgsI	TTSAA	9 cut(s)	278, 563, 611, 737, 749, 827, 920, 959, 992
AhlI	ACTAGT	1 cut(s)	1102
AjnI	CCWGG	1 cut(s)	847
AluBI	AGCT	6 cut(s)	221, 297, 335, 440, 776, 995
AluI	AGCT	6 cut(s)	221, 297, 335, 440, 776, 995
Alw21I	GWGCWC	1 cut(s)	382
Alw44I	GTGCAC	1 cut(s)	378
AlwI	GGATC	1 cut(s)	702
AlwNI	CAGNNNCTG	1 cut(s)	835
Aor13HI	TCCGGA	2 cut(s)	659, 680
AoxI	GGCC	2 cut(s)	291, 355
ApaLI	GTGCAC	1 cut(s)	378
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	6 cut(s)	416, 731, 744, 865, 1014, 1089
AseI	ATTAAT	1 cut(s)	1080
AsiGI	ACCGGT	1 cut(s)	446
Asp700I	GAANNNNTTC	1 cut(s)	843
AspLEI	GCGC	1 cut(s)	677
AspS9I	GGNCC	6 cut(s)	47, 254, 291, 356, 662, 854
AsuC2I	CCSGG	1 cut(s)	1071
AsuHPI	GGTGA	2 cut(s)	44, 113
AsuII	TTCGAA	1 cut(s)	435
AvaII	GGWCC	4 cut(s)	47, 254, 662, 854
BaeGI	GKGCMC	1 cut(s)	382
BarI	GAAGNNNNNNTAC	2 cut(s)	928, 960
Bbv12I	GWGCWC	1 cut(s)	382
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	4 cut(s)	67, 92, 201, 1047
BciT130I	CCWGG	1 cut(s)	849
BcnI	CCSGG	1 cut(s)	1071
BcuI	ACTAGT	1 cut(s)	1102
BfaI	CTAG	2 cut(s)	95, 1103
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	2 cut(s)	441, 492
BlsI	GCNGC	2 cut(s)	442, 493
Bme1390I	CCNGG	2 cut(s)	849, 1071
Bme18I	GGWCC	4 cut(s)	47, 254, 662, 854
BmgT120I	GGNCC	6 cut(s)	47, 254, 291, 356, 662, 854
BmiI	GGNNCC	3 cut(s)	48, 855, 856
BmrFI	CCNGG	2 cut(s)	849, 1071
BmsI	GCATC	2 cut(s)	450, 686
Bpu14I	TTCGAA	1 cut(s)	435
BpuMI	CCSGG	1 cut(s)	1071
Bsa29I	ATCGAT	1 cut(s)	925
BsaJI	CCNNGG	3 cut(s)	689, 848, 1046
BsaWI	WCCGGW	3 cut(s)	446, 659, 680
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 131, 364
Bse118I	RCCGGY	1 cut(s)	446
Bse1I	ACTGG	1 cut(s)	11
BseAI	TCCGGA	2 cut(s)	659, 680
BseBI	CCWGG	1 cut(s)	849
BseCI	ATCGAT	1 cut(s)	925
BseDI	CCNNGG	3 cut(s)	689, 848, 1046
BseGI	GGATG	3 cut(s)	59, 112, 677
BseLI	CCNNNNNNNGG	3 cut(s)	17, 131, 364
BseNI	ACTGG	1 cut(s)	11
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	1 cut(s)	427
Bsh1236I	CGCG	2 cut(s)	205, 675
BshFI	GGCC	2 cut(s)	293, 357
BshTI	ACCGGT	1 cut(s)	446
BshVI	ATCGAT	1 cut(s)	925
BsiHKAI	GWGCWC	1 cut(s)	382
BsiSI	CCGG	4 cut(s)	447, 660, 681, 1070
BslFI	GGGAC	2 cut(s)	60, 840
BslI	CCNNNNNNNGG	3 cut(s)	17, 131, 364
BsmFI	GGGAC	2 cut(s)	60, 840
BsnI	GGCC	2 cut(s)	293, 357
Bsp119I	TTCGAA	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp13I	TCCGGA	2 cut(s)	659, 680
Bsp143I	GATC	6 cut(s)	25, 427, 694, 709, 1030, 1174
Bsp19I	CCATGG	1 cut(s)	689
BspACI	CCGC	2 cut(s)	491, 1038
BspANI	GGCC	2 cut(s)	293, 357
BspDI	ATCGAT	1 cut(s)	925
BspEI	TCCGGA	2 cut(s)	659, 680
BspFNI	CGCG	2 cut(s)	205, 675
BspLI	GGNNCC	3 cut(s)	48, 855, 856
BspPI	GGATC	1 cut(s)	702
BspT104I	TTCGAA	1 cut(s)	435
BsrFI	RCCGGY	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	11
BssAI	RCCGGY	1 cut(s)	446
BssECI	CCNNGG	3 cut(s)	689, 848, 1046
BssMI	GATC	6 cut(s)	25, 427, 694, 709, 1030, 1174
BssT1I	CCWWGG	2 cut(s)	689, 1046
Bst2UI	CCWGG	1 cut(s)	849
Bst4CI	ACNGT	3 cut(s)	119, 195, 247
BstBI	TTCGAA	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	794
BstDSI	CCRYGG	1 cut(s)	689
BstF5I	GGATG	3 cut(s)	59, 112, 677
BstFNI	CGCG	2 cut(s)	205, 675
BstHHI	GCGC	1 cut(s)	677
BstKTI	GATC	6 cut(s)	28, 430, 697, 712, 1033, 1177
BstMBI	GATC	6 cut(s)	25, 427, 694, 709, 1030, 1174
BstNI	CCWGG	1 cut(s)	849
BstSCI	CCNGG	2 cut(s)	847, 1069
BstSLI	GKGCMC	1 cut(s)	382
BstUI	CGCG	2 cut(s)	205, 675
BstV1I	GCAGC	1 cut(s)	427
BstX2I	RGATCY	2 cut(s)	25, 694
BstYI	RGATCY	2 cut(s)	25, 694
Bsu15I	ATCGAT	1 cut(s)	925
BsuRI	GGCC	2 cut(s)	293, 357
BsuTUI	ATCGAT	1 cut(s)	925
BtgI	CCRYGG	1 cut(s)	689
BtgZI	GCGATG	1 cut(s)	220
BtsCI	GGATG	3 cut(s)	59, 112, 677
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	835
CfoI	GCGC	1 cut(s)	677
Cfr10I	RCCGGY	1 cut(s)	446
Cfr13I	GGNCC	6 cut(s)	47, 254, 291, 356, 662, 854
ClaI	ATCGAT	1 cut(s)	925
Csp6I	GTAC	1 cut(s)	788
CspAI	ACCGGT	1 cut(s)	446
CviAII	CATG	3 cut(s)	64, 68, 690
CviQI	GTAC	1 cut(s)	788
DdeI	CTNAG	1 cut(s)	794
DpnI	GATC	6 cut(s)	27, 429, 696, 711, 1032, 1176
DpnII	GATC	6 cut(s)	25, 427, 694, 709, 1030, 1174
Eco130I	CCWWGG	2 cut(s)	689, 1046
Eco47I	GGWCC	4 cut(s)	47, 254, 662, 854
EcoO109I	RGGNCCY	2 cut(s)	47, 854
EcoRII	CCWGG	1 cut(s)	847
EcoT14I	CCWWGG	2 cut(s)	689, 1046
EcoT22I	ATGCAT	2 cut(s)	69, 465
ErhI	CCWWGG	2 cut(s)	689, 1046
FaeI	CATG	3 cut(s)	67, 71, 693
FaqI	GGGAC	2 cut(s)	60, 840
FatI	CATG	3 cut(s)	63, 67, 689
Fnu4HI	GCNGC	2 cut(s)	441, 492
FokI	GGATG	3 cut(s)	46, 119, 664
Fsp4HI	GCNGC	2 cut(s)	441, 492
FspBI	CTAG	2 cut(s)	95, 1103
GlaI	GCGC	1 cut(s)	676
GluI	GCNGC	2 cut(s)	441, 492
HaeIII	GGCC	2 cut(s)	293, 357
HapII	CCGG	4 cut(s)	447, 660, 681, 1070
HhaI	GCGC	1 cut(s)	677
Hin1II	CATG	3 cut(s)	67, 71, 693
Hin6I	GCGC	1 cut(s)	675
HinP1I	GCGC	1 cut(s)	675
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	7 cut(s)	325, 385, 719, 767, 809, 898, 927
HpaII	CCGG	4 cut(s)	447, 660, 681, 1070
HphI	GGTGA	2 cut(s)	44, 113
Hpy166II	GTNNAC	4 cut(s)	115, 122, 231, 380
Hpy188I	TCNGA	2 cut(s)	305, 407
Hpy188III	TCNNGA	6 cut(s)	95, 660, 681, 836, 902, 1097
Hpy8I	GTNNAC	4 cut(s)	115, 122, 231, 380
HpyAV	CCTTC	3 cut(s)	605, 833, 954
HpyCH4III	ACNGT	3 cut(s)	119, 195, 247
HpyCH4V	TGCA	5 cut(s)	67, 164, 380, 463, 1087
HpyF3I	CTNAG	1 cut(s)	794
Hsp92II	CATG	3 cut(s)	67, 71, 693
HspAI	GCGC	1 cut(s)	675
KflI	GGGWCCC	1 cut(s)	854
Kpn2I	TCCGGA	2 cut(s)	659, 680
Kzo9I	GATC	6 cut(s)	25, 427, 694, 709, 1030, 1174
LmnI	GCTCC	1 cut(s)	1000
Lsp1109I	GCAGC	1 cut(s)	427
LweI	GCATC	2 cut(s)	450, 686
MaeI	CTAG	2 cut(s)	95, 1103
MaeIII	GTNAC	3 cut(s)	13, 88, 199
MalI	GATC	6 cut(s)	27, 429, 696, 711, 1032, 1176
MboI	GATC	6 cut(s)	25, 427, 694, 709, 1030, 1174
MboII	GAAGA	5 cut(s)	16, 68, 647, 689, 1085
MfeI	CAATTG	1 cut(s)	263
MflI	RGATCY	2 cut(s)	25, 694
MhlI	GDGCHC	1 cut(s)	382
MlyI	GAGTC	3 cut(s)	334, 379, 728
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	5 cut(s)	60, 97, 140, 476, 547
Mph1103I	ATGCAT	2 cut(s)	69, 465
MroI	TCCGGA	2 cut(s)	659, 680
MroXI	GAANNNNTTC	1 cut(s)	843
MseI	TTAA	5 cut(s)	83, 548, 1080, 1107, 1180
MslI	CAYNNNNRTG	1 cut(s)	449
MspI	CCGG	4 cut(s)	447, 660, 681, 1070
MspR9I	CCNGG	2 cut(s)	849, 1071
MunI	CAATTG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	849
MvnI	CGCG	2 cut(s)	205, 675
NciI	CCSGG	1 cut(s)	1071
NcoI	CCATGG	1 cut(s)	689
NdeII	GATC	6 cut(s)	25, 427, 694, 709, 1030, 1174
NlaIII	CATG	3 cut(s)	67, 71, 693
NlaIV	GGNNCC	3 cut(s)	48, 855, 856
NmeAIII	GCCGAG	1 cut(s)	333
NsiI	ATGCAT	2 cut(s)	69, 465
NspV	TTCGAA	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	843
PfeI	GAWTC	4 cut(s)	767, 809, 898, 927
PinAI	ACCGGT	1 cut(s)	446
PkrI	GCNGC	2 cut(s)	442, 493
PleI	GAGTC	3 cut(s)	333, 379, 727
PpsI	GAGTC	3 cut(s)	333, 379, 727
PpuMI	RGGWCCY	2 cut(s)	47, 854
PshBI	ATTAAT	1 cut(s)	1080
Psp5II	RGGWCCY	2 cut(s)	47, 854
Psp6I	CCWGG	1 cut(s)	847
PspGI	CCWGG	1 cut(s)	847
PspN4I	GGNNCC	3 cut(s)	48, 855, 856
PspPI	GGNCC	6 cut(s)	47, 254, 291, 356, 662, 854
PspPPI	RGGWCCY	2 cut(s)	47, 854
PstNI	CAGNNNCTG	1 cut(s)	835
PsuI	RGATCY	2 cut(s)	25, 694
RsaI	GTAC	1 cut(s)	789
RsaNI	GTAC	1 cut(s)	788
RseI	CAYNNNNRTG	1 cut(s)	449
SaqAI	TTAA	5 cut(s)	83, 548, 1080, 1107, 1180
SatI	GCNGC	2 cut(s)	441, 492
Sau3AI	GATC	6 cut(s)	25, 427, 694, 709, 1030, 1174
Sau96I	GGNCC	6 cut(s)	47, 254, 291, 356, 662, 854
SchI	GAGTC	3 cut(s)	334, 379, 728
ScrFI	CCNGG	2 cut(s)	849, 1071
SduI	GDGCHC	1 cut(s)	382
SfaNI	GCATC	2 cut(s)	450, 686
SfuI	TTCGAA	1 cut(s)	435
SinI	GGWCC	4 cut(s)	47, 254, 662, 854
SmiMI	CAYNNNNRTG	1 cut(s)	449
SpeI	ACTAGT	1 cut(s)	1102
SsiI	CCGC	2 cut(s)	491, 1038
SspI	AATATT	2 cut(s)	188, 274
SspMI	CTAG	2 cut(s)	95, 1103
StyD4I	CCNGG	2 cut(s)	847, 1069
StyI	CCWWGG	2 cut(s)	689, 1046
TaaI	ACNGT	3 cut(s)	119, 195, 247
TaqI	TCGA	2 cut(s)	435, 925
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	4 cut(s)	767, 809, 898, 927
Tru1I	TTAA	5 cut(s)	83, 548, 1080, 1107, 1180
Tru9I	TTAA	5 cut(s)	83, 548, 1080, 1107, 1180
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	5 cut(s)	17, 744, 759, 919, 1130
VneI	GTGCAC	1 cut(s)	378
VpaK11BI	GGWCC	4 cut(s)	47, 254, 662, 854
VspI	ATTAAT	1 cut(s)	1080
XapI	RAATTY	6 cut(s)	416, 731, 744, 865, 1014, 1089
XbaI	TCTAGA	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	843
XspI	CTAG	2 cut(s)	95, 1103
Zsp2I	ATGCAT	2 cut(s)	69, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.