Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0021891

Physical Location & Seq

Genomic Coordinates Reverse (-)

9661168 .. 9661527

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g06230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTCACAGAAGCAATAACTGTAAACGGACCAGAACAGTTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAAAATAATTATGTTGGAGTTGAGTCGTATTGCTTCTCATATGTTATGGCTCGGTCCTTTTATGGCAGATATTGGTGCACAAACTCCGGTTTTCTATATTTTCAAAGAAAGAGAATTAGTATATGATCGATTCGAAGCTACCACCGGTATGAGAATGATGCATAATTATTTTCGTATCGAAGGAGTAGCGGCCGATCTACCTCATGGCTGGATAGATAAATGTTTGGATTTCTGTGATTATTTTTTAACAAGAGTTGCTGAATATCAAAAACTTATTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0055035 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_49kDa NADHdh

Protein Analysis

120

Amino Acids

13.86

Weight (kDa)

5.87

Isoelectric Point (pI)

39.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_49kDa	PF00346	49 - 119	5e-22	Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0021891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG01110
fragaria_vesca	FvH4_6g41620 FvH4_c3g00020
pyrus_communis	pycom06g06230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	266
AcoI	YGGCCR	1 cut(s)	267
AfaI	GTAC	1 cut(s)	57
AgeI	ACCGGT	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	53, 181
AluBI	AGCT	2 cut(s)	72, 215
AluI	AGCT	2 cut(s)	72, 215
Alw21I	GWGCWC	1 cut(s)	157
Alw44I	GTGCAC	1 cut(s)	153
AoxI	GGCC	1 cut(s)	267
ApaLI	GTGCAC	1 cut(s)	153
AsiGI	ACCGGT	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	29, 131
AsuII	TTCGAA	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	29, 131
BaeGI	GKGCMC	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	157
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
Bme18I	GGWCC	2 cut(s)	29, 131
BmgT120I	GGNCC	2 cut(s)	29, 131
BmsI	GCATC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	210
Bsa29I	ATCGAT	1 cut(s)	205
BsaWI	WCCGGW	2 cut(s)	163, 221
Bse118I	RCCGGY	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	205
BseSI	GKGCMC	1 cut(s)	157
BseX3I	CGGCCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	269
BshTI	ACCGGT	1 cut(s)	221
BshVI	ATCGAT	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	2 cut(s)	164, 222
BsnI	GGCC	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	202, 271
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	269
BspDI	ATCGAT	1 cut(s)	205
BspT104I	TTCGAA	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	221
BssMI	GATC	2 cut(s)	202, 271
Bst4CI	ACNGT	2 cut(s)	22, 39
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	70
BstKTI	GATC	2 cut(s)	205, 274
BstMBI	GATC	2 cut(s)	202, 271
BstMCI	CGRYCG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	157
BstZI	CGGCCG	1 cut(s)	267
Bsu15I	ATCGAT	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	269
BsuTUI	ATCGAT	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	70
Cfr10I	RCCGGY	1 cut(s)	221
Cfr13I	GGNCC	2 cut(s)	29, 131
ClaI	ATCGAT	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	56
CspAI	ACCGGT	1 cut(s)	221
CviAII	CATG	2 cut(s)	281, 357
CviJI	RGCY	6 cut(s)	68, 72, 127, 215, 269, 285
CviKI_1	RGCY	6 cut(s)	68, 72, 127, 215, 269, 285
CviQI	GTAC	1 cut(s)	56
DpnI	GATC	2 cut(s)	204, 273
DpnII	GATC	2 cut(s)	202, 271
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
EclXI	CGGCCG	1 cut(s)	267
Eco47I	GGWCC	2 cut(s)	29, 131
Eco52I	CGGCCG	1 cut(s)	267
EcoT22I	ATGCAT	1 cut(s)	240
FaeI	CATG	2 cut(s)	284, 360
FatI	CATG	2 cut(s)	280, 356
FauNDI	CATATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	269
HapII	CCGG	2 cut(s)	164, 222
Hin1II	CATG	2 cut(s)	284, 360
HinfI	GANTC	2 cut(s)	100, 207
HpaII	CCGG	2 cut(s)	164, 222
Hpy166II	GTNNAC	3 cut(s)	6, 25, 155
Hpy8I	GTNNAC	3 cut(s)	6, 25, 155
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	2 cut(s)	22, 39
HpyCH4V	TGCA	2 cut(s)	155, 238
Hsp92II	CATG	2 cut(s)	284, 360
Kzo9I	GATC	2 cut(s)	202, 271
LpnPI	CCDG	5 cut(s)	45, 82, 177, 235, 271
LweI	GCATC	1 cut(s)	225
MalI	GATC	2 cut(s)	204, 273
MboI	GATC	2 cut(s)	202, 271
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	3 cut(s)	84, 191, 241
MlyI	GAGTC	1 cut(s)	109
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	1 cut(s)	288
Mph1103I	ATGCAT	1 cut(s)	240
MseI	TTAA	1 cut(s)	323
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	2 cut(s)	164, 222
NdeI	CATATG	1 cut(s)	117
NdeII	GATC	2 cut(s)	202, 271
NlaIII	CATG	2 cut(s)	284, 360
NsiI	ATGCAT	1 cut(s)	240
NspV	TTCGAA	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	207
PinAI	ACCGGT	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PspPI	GGNCC	2 cut(s)	29, 131
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	323
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	202, 271
Sau96I	GGNCC	2 cut(s)	29, 131
SchI	GAGTC	1 cut(s)	109
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	4 cut(s)	61, 74, 217, 280
SfaNI	GCATC	1 cut(s)	225
SfuI	TTCGAA	1 cut(s)	210
SgeI	CNNG	9 cut(s)	44, 65, 81, 140, 176, 234, 293, 298, 339
SinI	GGWCC	2 cut(s)	29, 131
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	3 cut(s)	84, 191, 241
SsiI	CCGC	1 cut(s)	266
SspI	AATATT	1 cut(s)	49
TaaI	ACNGT	2 cut(s)	22, 39
TaqI	TCGA	3 cut(s)	205, 210, 255
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	84, 191, 241
TauI	GCSGC	1 cut(s)	269
TfiI	GAWTC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TspGWI	ACGGA	1 cut(s)	42
VneI	GTGCAC	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	29, 131
Zsp2I	ATGCAT	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.