Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

contig_3

Orthogroup ID

OG0021891

Physical Location & Seq

Genomic Coordinates Forward (+)

3806 .. 6179

Gene Structure 2374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_c3g00020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGAGTCTTGATATTCTGATGATTCAAAAAAATTTAACTCTTACGGAATTCATCAAAAGAGGAATTTTGATTATTGAACCAATTCGTCTATCTATAAAAAATGATGGGCAATTTATTATGTATCAAACCATTGGTATTTCATTGGTTCATCAAAGTAAACACAAAATTAATCAAAAATACCGAGAAAAAACCGATGTTGATAAGAATTCTGATGAAGTCATTACCAAATATAAAAAGATGACTGGAAATAGAGATAAAAATCATTATGATTTGTTTGTTCCTGAAAATCTTTTATCACCGAGACTTCGGAGAGAATTTAGAATTCTAATTTGTTTCAATTTTAGGAATAGAAATGATATCCATAAAAATTCAGCATTAGGGAATGGGAATAAGGTAAACCATCAGGTTTTGGATAAAAGCAAAGGATATAAAAGGAAACTGATTAAATTAAAGTTATTTCTGTGGCCCAATTATCGATTAGAAGATTTAGCTTGTATGAATCGGTATTGGTTTGATAGCAATAACGGCAGTCGTTTCGGTATGCGGGTCTATGACGACAAAAAGGAAAAACCTATGAATATACCAGCTACAAGAAAAGACCTCATGGTAGTCAACATGGGTCCCCACCACCCATCAATGCATGGTGTTCTTCGACTTATCATTACTCTAGATGGTGAAGATGTTATTGACTGTGAACCAATATTGGGTTATTTACACCGAGGGATGGAAAAAATTGCGGAAAACCGAACAATTATACAATATTTGCCTTATGTAACACGTTGGGATTATTTAGCTACTATGTTCACAGAAGCAATAACGGTAAATGGACCGGAACAGCTGGGAAATATTCAAGTACCTAAAAGAGCCAGCTATATCAGAATAATTATGTTGGAGTTGAGTCGTATAGCTTCTCATCTGTTATGGCTTGGCCCTTTTATGGCGGATATTGGTGCGCAGACTCCCTTTTTCTATATTTTCAGAGAAAGAGAATTAGTATATGATCTATTCGAAGCTGCCACCGGTATGAGAATGATGCATAATTATTTTAGGATCGGAGGGGTAGCGGCTGATCTTCCTCATGGCTGGATAGATAAATGTTTGGATTTTTGCGATTATTTTTTAATAAGGGTTGCTGAATATCAACAACTTATTACACGCAATCCTATTTTTTTAGAACGAGTCGAGGGGGTAGGCATTATTGGTCGAGAGGAAGTAATAAATTGGGGTTTATCAGGACCAATGCTGCGAGCGTCCGGAATACAATGGGATCTTCGTAAAGTTGATCAGTATGAGTGTTATGACGAATTTGATTGGGAAGTACAGTGGCAAAAAGAAGGGGATTCATTGGCTCGTTATCTAGTACGAATTGGTGAAATGACGGAATCCATAAAAATTATTCAACAGGCTCTTGAAGGAATTCCGGGGGGACCATATGAGAATTTAGAAATCCGATACTTTGATAGAGAAAGGAATCCAGAATGGAATGATTTTGAATATCGCTTTTTATTAGTAAAAAACCTTCTCCTACATTTGAATTGCCGAAACAAGAACTTTATGTACGAGTCGAAGCTCCAAAAGGAGAATTGGGGATTTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0055035 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_49kDa Fer4 NADHdh

Protein Analysis

533

Amino Acids

62.93

Weight (kDa)

8.69

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_49kDa	PF00346	315 - 485	2.5e-71	Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0021891)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG01110
fragaria_vesca	FvH4_6g41620 FvH4_c3g00020
pyrus_communis	pycom06g06230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	954
AccIII	TCCGGA	1 cut(s)	1253
AciI	CCGC	4 cut(s)	544, 737, 941, 1064
AclWI	GGATC	2 cut(s)	1058, 1275
AfaI	GTAC	4 cut(s)	855, 1320, 1362, 1559
AfiI	CCNNNNNNNGG	3 cut(s)	704, 724, 937
AflIII	ACRYGT	1 cut(s)	776
AgeI	ACCGGT	1 cut(s)	1019
AgsI	TTSAA	8 cut(s)	26, 77, 337, 851, 1400, 1412, 1493, 1534
AluBI	AGCT	8 cut(s)	491, 587, 794, 838, 870, 908, 1013, 1570
AluI	AGCT	8 cut(s)	491, 587, 794, 838, 870, 908, 1013, 1570
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	1058, 1275
Aor13HI	TCCGGA	1 cut(s)	1253
AoxI	GGCC	2 cut(s)	464, 928
ApeKI	GCWGC	2 cut(s)	1013, 1243
AseI	ATTAAT	1 cut(s)	168
AsiGI	ACCGGT	1 cut(s)	1019
Asp700I	GAANNNNTTC	2 cut(s)	81, 1416
AspLEI	GCGC	1 cut(s)	955
AspS9I	GGNCC	6 cut(s)	465, 620, 827, 929, 1235, 1427
AsuC2I	CCSGG	1 cut(s)	1422
AsuHPI	GGTGA	3 cut(s)	288, 686, 1382
AsuII	TTCGAA	1 cut(s)	1008
AvaII	GGWCC	4 cut(s)	620, 827, 1235, 1427
BarI	GAAGNNNNNNTAC	2 cut(s)	1503, 1535
BbvI	GCAGC	2 cut(s)	1000, 1230
BccI	CCATC	5 cut(s)	98, 408, 640, 665, 718
BceAI	ACGGC	1 cut(s)	541
BcgI	CGANNNNNNTGC	2 cut(s)	517, 551
BclI	TGATCA	1 cut(s)	1282
BcnI	CCSGG	1 cut(s)	1422
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	2 cut(s)	668, 1358
BisI	GCNGC	3 cut(s)	1014, 1065, 1244
BlsI	GCNGC	3 cut(s)	1015, 1066, 1245
Bme1390I	CCNGG	1 cut(s)	1422
Bme18I	GGWCC	4 cut(s)	620, 827, 1235, 1427
BmgT120I	GGNCC	6 cut(s)	465, 620, 827, 929, 1235, 1427
BmiI	GGNNCC	3 cut(s)	621, 622, 1428
BmrFI	CCNGG	1 cut(s)	1422
BmsI	GCATC	1 cut(s)	1023
Bpu14I	TTCGAA	1 cut(s)	1008
BpuMI	CCSGG	1 cut(s)	1422
Bsa29I	ATCGAT	1 cut(s)	475
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	718, 1421
BsaWI	WCCGGW	3 cut(s)	829, 1019, 1253
Bsc4I	CCNNNNNNNGG	3 cut(s)	704, 724, 937
Bse118I	RCCGGY	1 cut(s)	1019
Bse1I	ACTGG	1 cut(s)	247
Bse8I	GATNNNNATC	1 cut(s)	258
BseAI	TCCGGA	1 cut(s)	1253
BseCI	ATCGAT	1 cut(s)	475
BseDI	CCNNGG	2 cut(s)	718, 1421
BseGI	GGATG	1 cut(s)	729
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	3 cut(s)	704, 724, 937
BseNI	ACTGG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	1000, 1230
BseYI	CCCAGC	1 cut(s)	838
BshFI	GGCC	2 cut(s)	466, 930
BshTI	ACCGGT	1 cut(s)	1019
BshVI	ATCGAT	1 cut(s)	475
BsiSI	CCGG	4 cut(s)	830, 1020, 1254, 1421
BslFI	GGGAC	2 cut(s)	606, 1440
BslI	CCNNNNNNNGG	3 cut(s)	704, 724, 937
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	2 cut(s)	606, 1440
BsnI	GGCC	2 cut(s)	466, 930
Bsp119I	TTCGAA	1 cut(s)	1008
Bsp13I	TCCGGA	1 cut(s)	1253
Bsp143I	GATC	5 cut(s)	1000, 1050, 1069, 1267, 1282
BspACI	CCGC	4 cut(s)	544, 737, 941, 1064
BspANI	GGCC	2 cut(s)	466, 930
BspDI	ATCGAT	1 cut(s)	475
BspEI	TCCGGA	1 cut(s)	1253
BspLI	GGNNCC	3 cut(s)	621, 622, 1428
BspPI	GGATC	2 cut(s)	1058, 1275
BspT104I	TTCGAA	1 cut(s)	1008
BsrFI	RCCGGY	1 cut(s)	1019
BsrI	ACTGG	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	1019
BssECI	CCNNGG	2 cut(s)	718, 1421
BssMI	GATC	5 cut(s)	1000, 1050, 1069, 1267, 1282
Bst4CI	ACNGT	3 cut(s)	692, 820, 1323
BstBI	TTCGAA	1 cut(s)	1008
BstC8I	GCNNGC	2 cut(s)	868, 1248
BstF5I	GGATG	1 cut(s)	729
BstHHI	GCGC	1 cut(s)	955
BstKTI	GATC	5 cut(s)	1003, 1053, 1072, 1270, 1285
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	5 cut(s)	1000, 1050, 1069, 1267, 1282
BstMWI	GCNNNNNNNGC	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	1420
BstV1I	GCAGC	2 cut(s)	1000, 1230
BstX2I	RGATCY	1 cut(s)	1267
BstYI	RGATCY	1 cut(s)	1267
Bsu15I	ATCGAT	1 cut(s)	475
BsuRI	GGCC	2 cut(s)	466, 930
BsuTUI	ATCGAT	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	729
BtsIMutI	CAGTG	1 cut(s)	1328
Cac8I	GCNNGC	2 cut(s)	868, 1248
CfoI	GCGC	1 cut(s)	955
Cfr10I	RCCGGY	1 cut(s)	1019
Cfr13I	GGNCC	6 cut(s)	465, 620, 827, 929, 1235, 1427
ClaI	ATCGAT	1 cut(s)	475
CseI	GACGC	1 cut(s)	1239
Csp6I	GTAC	4 cut(s)	854, 1319, 1361, 1558
CspAI	ACCGGT	1 cut(s)	1019
CviAII	CATG	4 cut(s)	604, 616, 641, 1079
CviQI	GTAC	4 cut(s)	854, 1319, 1361, 1558
DpnI	GATC	5 cut(s)	1002, 1052, 1071, 1269, 1284
DpnII	GATC	5 cut(s)	1000, 1050, 1069, 1267, 1282
EciI	GGCGGA	1 cut(s)	956
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	4 cut(s)	620, 827, 1235, 1427
EcoO109I	RGGNCCY	1 cut(s)	620
EcoRI	GAATTC	4 cut(s)	47, 205, 321, 1416
EcoRV	GATATC	1 cut(s)	358
EcoT22I	ATGCAT	2 cut(s)	642, 1038
FaeI	CATG	4 cut(s)	607, 619, 644, 1082
FaqI	GGGAC	2 cut(s)	606, 1440
FatI	CATG	4 cut(s)	603, 615, 640, 1078
FauI	CCCGC	1 cut(s)	537
FauNDI	CATATG	1 cut(s)	1432
FbaI	TGATCA	1 cut(s)	1282
Fnu4HI	GCNGC	3 cut(s)	1014, 1065, 1244
FokI	GGATG	1 cut(s)	736
Fsp4HI	GCNGC	3 cut(s)	1014, 1065, 1244
FspBI	CTAG	2 cut(s)	668, 1358
FspI	TGCGCA	1 cut(s)	954
GlaI	GCGC	1 cut(s)	954
GluI	GCNGC	3 cut(s)	1014, 1065, 1244
GsaI	CCCAGC	1 cut(s)	842
HaeIII	GGCC	2 cut(s)	466, 930
HapII	CCGG	4 cut(s)	830, 1020, 1254, 1421
HgaI	GACGC	1 cut(s)	1239
HhaI	GCGC	1 cut(s)	955
Hin1II	CATG	4 cut(s)	607, 619, 644, 1082
Hin6I	GCGC	1 cut(s)	953
HinP1I	GCGC	1 cut(s)	953
HincII	GTYRAC	1 cut(s)	613
HindII	GTYRAC	1 cut(s)	613
HpaII	CCGG	4 cut(s)	830, 1020, 1254, 1421
HphI	GGTGA	3 cut(s)	288, 686, 1382
Hpy166II	GTNNAC	5 cut(s)	158, 397, 613, 695, 804
Hpy188I	TCNGA	8 cut(s)	18, 211, 309, 878, 980, 1055, 1451, 1598
Hpy188III	TCNNGA	8 cut(s)	8, 281, 668, 1205, 1233, 1254, 1409, 1475
Hpy8I	GTNNAC	5 cut(s)	158, 397, 613, 695, 804
HpyAV	CCTTC	3 cut(s)	1328, 1406, 1529
HpyCH4III	ACNGT	3 cut(s)	692, 820, 1323
HpyCH4IV	ACGT	1 cut(s)	778
HpyCH4V	TGCA	2 cut(s)	640, 1036
HpyF10VI	GCNNNNNNNGC	1 cut(s)	525
HpySE526I	ACGT	1 cut(s)	778
Hsp92II	CATG	4 cut(s)	607, 619, 644, 1082
HspAI	GCGC	1 cut(s)	953
KflI	GGGWCCC	1 cut(s)	620
Kpn2I	TCCGGA	1 cut(s)	1253
Ksp22I	TGATCA	1 cut(s)	1282
Kzo9I	GATC	5 cut(s)	1000, 1050, 1069, 1267, 1282
LmnI	GCTCC	1 cut(s)	1575
Lsp1109I	GCAGC	2 cut(s)	1000, 1230
LweI	GCATC	1 cut(s)	1023
MaeI	CTAG	2 cut(s)	668, 1358
MaeII	ACGT	1 cut(s)	778
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	5 cut(s)	1002, 1052, 1071, 1269, 1284
MboI	GATC	5 cut(s)	1000, 1050, 1069, 1267, 1282
MboII	GAAGA	5 cut(s)	494, 641, 689, 1064, 1262
MflI	RGATCY	1 cut(s)	1267
MlyI	GAGTC	5 cut(s)	13, 907, 952, 1188, 1571
MmeI	TCCRAC	1 cut(s)	870
MnlI	CCTC	7 cut(s)	53, 611, 713, 1049, 1086, 1177, 1201
Mph1103I	ATGCAT	2 cut(s)	642, 1038
MroI	TCCGGA	1 cut(s)	1253
MroXI	GAANNNNTTC	2 cut(s)	81, 1416
MseI	TTAA	5 cut(s)	35, 168, 444, 449, 1121
MslI	CAYNNNNRTG	1 cut(s)	1022
MspA1I	CMGCKG	1 cut(s)	838
MspI	CCGG	4 cut(s)	830, 1020, 1254, 1421
MspR9I	CCNGG	1 cut(s)	1422
MwoI	GCNNNNNNNGC	1 cut(s)	525
NciI	CCSGG	1 cut(s)	1422
NdeI	CATATG	1 cut(s)	1432
NdeII	GATC	5 cut(s)	1000, 1050, 1069, 1267, 1282
NlaIII	CATG	4 cut(s)	607, 619, 644, 1082
NlaIV	GGNNCC	3 cut(s)	621, 622, 1428
NsbI	TGCGCA	1 cut(s)	954
NsiI	ATGCAT	2 cut(s)	642, 1038
NspV	TTCGAA	1 cut(s)	1008
PdmI	GAANNNNTTC	2 cut(s)	81, 1416
PfeI	GAWTC	5 cut(s)	22, 499, 1340, 1382, 1471
PinAI	ACCGGT	1 cut(s)	1019
PkrI	GCNGC	3 cut(s)	1015, 1066, 1245
PleI	GAGTC	5 cut(s)	12, 906, 952, 1187, 1570
PpsI	GAGTC	5 cut(s)	12, 906, 952, 1187, 1570
PpuMI	RGGWCCY	1 cut(s)	620
PshBI	ATTAAT	1 cut(s)	168
Psp5II	RGGWCCY	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	838
PspN4I	GGNNCC	3 cut(s)	621, 622, 1428
PspPI	GGNCC	6 cut(s)	465, 620, 827, 929, 1235, 1427
PspPPI	RGGWCCY	1 cut(s)	620
PsrI	GAACNNNNNNTAC	2 cut(s)	1541, 1573
PsuI	RGATCY	1 cut(s)	1267
PvuII	CAGCTG	1 cut(s)	838
RsaI	GTAC	4 cut(s)	855, 1320, 1362, 1559
RsaNI	GTAC	4 cut(s)	854, 1319, 1361, 1558
RseI	CAYNNNNRTG	1 cut(s)	1022
SaqAI	TTAA	5 cut(s)	35, 168, 444, 449, 1121
SatI	GCNGC	3 cut(s)	1014, 1065, 1244
Sau3AI	GATC	5 cut(s)	1000, 1050, 1069, 1267, 1282
Sau96I	GGNCC	6 cut(s)	465, 620, 827, 929, 1235, 1427
SchI	GAGTC	5 cut(s)	13, 907, 952, 1188, 1571
ScrFI	CCNGG	1 cut(s)	1422
SfaNI	GCATC	1 cut(s)	1023
SfuI	TTCGAA	1 cut(s)	1008
SinI	GGWCC	4 cut(s)	620, 827, 1235, 1427
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SsiI	CCGC	4 cut(s)	544, 737, 941, 1064
SspI	AATATT	3 cut(s)	702, 761, 847
SspMI	CTAG	2 cut(s)	668, 1358
StyD4I	CCNGG	1 cut(s)	1420
TaaI	ACNGT	3 cut(s)	692, 820, 1323
TaiI	ACGT	1 cut(s)	781
TaqI	TCGA	6 cut(s)	475, 652, 1008, 1182, 1204, 1565
TatI	WGTACW	1 cut(s)	1318
TauI	GCSGC	1 cut(s)	1067
TfiI	GAWTC	5 cut(s)	22, 499, 1340, 1382, 1471
Tru1I	TTAA	5 cut(s)	35, 168, 444, 449, 1121
Tru9I	TTAA	5 cut(s)	35, 168, 444, 449, 1121
TscAI	CASTG	1 cut(s)	1328
TseI	GCWGC	2 cut(s)	1013, 1243
TspDTI	ATGAA	7 cut(s)	40, 129, 137, 228, 512, 590, 1332
TspGWI	ACGGA	2 cut(s)	59, 1394
TspRI	CASTG	1 cut(s)	1328
VpaK11BI	GGWCC	4 cut(s)	620, 827, 1235, 1427
VspI	ATTAAT	1 cut(s)	168
XbaI	TCTAGA	1 cut(s)	667
XmnI	GAANNNNTTC	2 cut(s)	81, 1416
XspI	CTAG	2 cut(s)	668, 1358
Zsp2I	ATGCAT	2 cut(s)	642, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.