Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021909

Physical Location & Seq

Genomic Coordinates Reverse (-)

40502 .. 42628

Gene Structure 2127 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG00160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGATTGTTCTAAAATGGTTATTCCTCACAATTTCTCCTTGTGATGCAGCGGAACCATGGCAATTAGGATCTCAAGACGCAGCTACACCTATAATGCAAGGAATAATAGACTTACATCACGATATCTTTTTCTTCCTCATTCTGATTTTGGTTTTCGTATTATGGATCTTGGTTCGCGCTTTATGGCATTTCCACTATAAAAAAAATGCAATCCCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATCTTTCCTAGTATCATCTCGATGTTCATTGCTATACCATCATTTGCTCTCTTATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCTGACTATAACAGTTCCGATGAGCAGTCACTCACTTTTGACAGTTATATGATTCCAGAAGAAGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTGTACCAGCCAAAACTCATCTACGTATTATTGTAACATCTGCTGATGTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAAATCTCTATTTTGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGTCTATCGTCGTAGAAGCTGTTCCTAGGAAAGATTATGGTTCTCGGGTATCCAATCAATTAATCCCCCAAACCGGGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX2 COX2_TM

Protein Analysis

260

Amino Acids

29.38

Weight (kDa)

5.4

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX2_TM	PF02790	17 - 103	2.7e-29	Cytochrome C oxidase subunit II, transmembrane domain
COX2	PF00116	116 - 240	3.4e-57	Cytochrome C oxidase subunit II, periplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00160
pyrus_communis	pycom461g00040
rosa_chinensis	RchiOBHm_MTg0498571
rosa_laevigata	RLG00000000458

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	177
AciI	CCGC	2 cut(s)	50, 215
AclWI	GGATC	3 cut(s)	76, 173, 332
AfaI	GTAC	5 cut(s)	510, 555, 573, 603, 636
AfiI	CCNNNNNNNGG	4 cut(s)	581, 770, 771, 772
AjnI	CCWGG	1 cut(s)	604
AluBI	AGCT	4 cut(s)	83, 359, 716, 779
AluI	AGCT	4 cut(s)	83, 359, 716, 779
AlwI	GGATC	3 cut(s)	76, 173, 332
Ama87I	CYCGRG	1 cut(s)	741
ApeKI	GCWGC	2 cut(s)	47, 80
AseI	ATTAAT	1 cut(s)	758
Asp700I	GAANNNNTTC	1 cut(s)	717
AspA2I	CCTAGG	1 cut(s)	722
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	255
AsuC2I	CCSGG	1 cut(s)	772
AvaI	CYCGRG	1 cut(s)	741
AvaII	GGWCC	1 cut(s)	255
AvrII	CCTAGG	1 cut(s)	722
AxyI	CCTNAGG	1 cut(s)	580
BbvI	GCAGC	2 cut(s)	59, 92
BccI	CCATC	2 cut(s)	266, 304
BciT130I	CCWGG	1 cut(s)	606
BciVI	GTATCC	1 cut(s)	757
BcnI	CCSGG	1 cut(s)	772
BfaI	CTAG	3 cut(s)	267, 461, 723
BfuI	GTATCC	1 cut(s)	757
BglII	AGATCT	1 cut(s)	457
BisI	GCNGC	2 cut(s)	48, 81
BlnI	CCTAGG	1 cut(s)	722
BlsI	GCNGC	2 cut(s)	49, 82
Bme1390I	CCNGG	2 cut(s)	606, 772
Bme18I	GGWCC	1 cut(s)	255
BmeT110I	CYCGRG	1 cut(s)	741
BmgT120I	GGNCC	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	606, 772
BmsI	GCATC	2 cut(s)	34, 586
BpuEI	CTTGAG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	772
BsaAI	YACGTR	1 cut(s)	530
BsaJI	CCNNGG	3 cut(s)	56, 722, 771
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	4 cut(s)	581, 770, 771, 772
Bse21I	CCTNAGG	1 cut(s)	580
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	606
BseDI	CCNNGG	3 cut(s)	56, 722, 771
BseLI	CCNNNNNNNGG	4 cut(s)	581, 770, 771, 772
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	594
BseXI	GCAGC	2 cut(s)	59, 92
BsgI	GTGCAG	1 cut(s)	685
Bsh1236I	CGCG	1 cut(s)	177
BsiHKCI	CYCGRG	1 cut(s)	741
BsiSI	CCGG	1 cut(s)	771
BslI	CCNNNNNNNGG	4 cut(s)	581, 770, 771, 772
BsoBI	CYCGRG	1 cut(s)	741
Bsp143I	GATC	4 cut(s)	68, 165, 337, 457
Bsp19I	CCATGG	1 cut(s)	56
BspACI	CCGC	2 cut(s)	50, 215
BspCNI	CTCAG	1 cut(s)	593
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	54
BspPI	GGATC	3 cut(s)	76, 173, 332
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	56, 722, 771
BssMI	GATC	4 cut(s)	68, 165, 337, 457
BssT1I	CCWWGG	2 cut(s)	56, 722
Bst2UI	CCWGG	1 cut(s)	606
Bst4CI	ACNGT	2 cut(s)	407, 437
BstBAI	YACGTR	1 cut(s)	530
BstDEI	CTNAG	1 cut(s)	580
BstDSI	CCRYGG	1 cut(s)	56
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	4 cut(s)	71, 168, 340, 460
BstMBI	GATC	4 cut(s)	68, 165, 337, 457
BstNI	CCWGG	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	604, 770
BstSNI	TACGTA	1 cut(s)	530
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	2 cut(s)	59, 92
BstX2I	RGATCY	4 cut(s)	68, 165, 337, 457
BstYI	RGATCY	4 cut(s)	68, 165, 337, 457
Bsu36I	CCTNAGG	1 cut(s)	580
BsuI	GTATCC	1 cut(s)	757
BtgI	CCRYGG	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	673
BtsIMutI	CAGTG	2 cut(s)	668, 673
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	255
CseI	GACGC	1 cut(s)	86
CsiI	ACCWGGT	1 cut(s)	604
Csp6I	GTAC	5 cut(s)	509, 554, 572, 602, 635
CviAII	CATG	3 cut(s)	57, 230, 689
CviJI	RGCY	7 cut(s)	83, 344, 359, 515, 569, 716, 779
CviKI_1	RGCY	7 cut(s)	83, 344, 359, 515, 569, 716, 779
CviQI	GTAC	5 cut(s)	509, 554, 572, 602, 635
DdeI	CTNAG	1 cut(s)	580
DpnI	GATC	4 cut(s)	70, 167, 339, 459
DpnII	GATC	4 cut(s)	68, 165, 337, 457
DraI	TTTAAA	1 cut(s)	615
Eco105I	TACGTA	1 cut(s)	530
Eco130I	CCWWGG	2 cut(s)	56, 722
Eco32I	GATATC	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	255
Eco81I	CCTNAGG	1 cut(s)	580
Eco88I	CYCGRG	1 cut(s)	741
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoRII	CCWGG	1 cut(s)	604
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	2 cut(s)	56, 722
ErhI	CCWWGG	2 cut(s)	56, 722
FaeI	CATG	3 cut(s)	60, 233, 692
FatI	CATG	3 cut(s)	56, 229, 688
FauI	CCCGC	1 cut(s)	222
Fnu4HI	GCNGC	2 cut(s)	48, 81
Fsp4HI	GCNGC	2 cut(s)	48, 81
FspBI	CTAG	3 cut(s)	267, 461, 723
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	2 cut(s)	48, 81
HapII	CCGG	1 cut(s)	771
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	3 cut(s)	60, 233, 692
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HindIII	AAGCTT	1 cut(s)	777
HinfI	GANTC	2 cut(s)	247, 445
HpaII	CCGG	1 cut(s)	771
Hpy166II	GTNNAC	2 cut(s)	493, 652
Hpy188I	TCNGA	5 cut(s)	144, 255, 381, 397, 412
Hpy188III	TCNNGA	6 cut(s)	74, 119, 244, 277, 449, 461
Hpy8I	GTNNAC	2 cut(s)	493, 652
Hpy99I	CGWCG	1 cut(s)	710
HpyAV	CCTTC	2 cut(s)	585, 638
HpyCH4III	ACNGT	2 cut(s)	407, 437
HpyCH4IV	ACGT	3 cut(s)	478, 529, 698
HpyCH4V	TGCA	4 cut(s)	47, 97, 209, 666
HpyF3I	CTNAG	1 cut(s)	580
HpySE526I	ACGT	3 cut(s)	478, 529, 698
Hsp92II	CATG	3 cut(s)	60, 233, 692
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	68, 165, 337, 457
LpnPI	CCDG	6 cut(s)	354, 462, 525, 567, 591, 618
Lsp1109I	GCAGC	2 cut(s)	59, 92
LweI	GCATC	2 cut(s)	34, 586
MabI	ACCWGGT	1 cut(s)	604
MaeI	CTAG	3 cut(s)	267, 461, 723
MaeII	ACGT	3 cut(s)	478, 529, 698
MaeIII	GTNAC	2 cut(s)	420, 538
MalI	GATC	4 cut(s)	70, 167, 339, 459
MboI	GATC	4 cut(s)	68, 165, 337, 457
MboII	GAAGA	4 cut(s)	124, 242, 464, 467
MflI	RGATCY	4 cut(s)	68, 165, 337, 457
MluCI	AATT	4 cut(s)	30, 62, 464, 755
MnlI	CCTC	5 cut(s)	35, 146, 319, 567, 589
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	3 cut(s)	614, 758, 781
MslI	CAYNNNNRTG	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	50
MspI	CCGG	1 cut(s)	771
MspR9I	CCNGG	2 cut(s)	606, 772
MvaI	CCWGG	1 cut(s)	606
MvnI	CGCG	1 cut(s)	177
NciI	CCSGG	1 cut(s)	772
NcoI	CCATGG	1 cut(s)	56
NdeII	GATC	4 cut(s)	68, 165, 337, 457
NlaIII	CATG	3 cut(s)	60, 233, 692
NlaIV	GGNNCC	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	2 cut(s)	247, 445
PkrI	GCNGC	2 cut(s)	49, 82
Ppu21I	YACGTR	1 cut(s)	530
PshBI	ATTAAT	1 cut(s)	758
Psp6I	CCWGG	1 cut(s)	604
PspGI	CCWGG	1 cut(s)	604
PspN4I	GGNNCC	1 cut(s)	54
PspPI	GGNCC	1 cut(s)	255
PsrI	GAACNNNNNNTAC	2 cut(s)	702, 734
PsuI	RGATCY	4 cut(s)	68, 165, 337, 457
RsaI	GTAC	5 cut(s)	510, 555, 573, 603, 636
RsaNI	GTAC	5 cut(s)	509, 554, 572, 602, 635
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	3 cut(s)	614, 758, 781
SatI	GCNGC	2 cut(s)	48, 81
Sau3AI	GATC	4 cut(s)	68, 165, 337, 457
Sau96I	GGNCC	1 cut(s)	255
ScrFI	CCNGG	2 cut(s)	606, 772
SexAI	ACCWGGT	1 cut(s)	604
SfaNI	GCATC	2 cut(s)	34, 586
SinI	GGWCC	1 cut(s)	255
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
SnaBI	TACGTA	1 cut(s)	530
Sse9I	AATT	4 cut(s)	30, 62, 464, 755
SsiI	CCGC	2 cut(s)	50, 215
SspMI	CTAG	3 cut(s)	267, 461, 723
StyD4I	CCNGG	2 cut(s)	604, 770
StyI	CCWWGG	2 cut(s)	56, 722
TaaI	ACNGT	2 cut(s)	407, 437
TaiI	ACGT	3 cut(s)	481, 532, 701
TaqI	TCGA	2 cut(s)	243, 278
TasI	AATT	4 cut(s)	30, 62, 464, 755
TfiI	GAWTC	2 cut(s)	247, 445
Tru1I	TTAA	3 cut(s)	614, 758, 781
Tru9I	TTAA	3 cut(s)	614, 758, 781
TscAI	CASTG	2 cut(s)	668, 673
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	2 cut(s)	47, 80
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	2 cut(s)	218, 274
TspRI	CASTG	2 cut(s)	668, 673
VpaK11BI	GGWCC	1 cut(s)	255
VspI	ATTAAT	1 cut(s)	758
XagI	CCTNNNNNAGG	1 cut(s)	579
XbaI	TCTAGA	1 cut(s)	460
XmaJI	CCTAGG	1 cut(s)	722
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	3 cut(s)	267, 461, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.