Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021909

Physical Location & Seq

Genomic Coordinates Forward (+)

106240 .. 107751

Gene Structure 1512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15623

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGATTGTAAAAGTTCTAGAATGGATATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACCCCTATGATGCAAGGAATAATGGACTTACATCACGATATCTTTTTCTTCCTCATTCTGATTTTGGTTTTCGTATCACGGATCTTGGTTCGCGCTTTATGGCATTTCCACTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATATTTCCTAGTATCATCCCGATGTTCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCACTTTTGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTGTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAGATCTCTATTTCGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCCTATCGTCGTAGAAGCTGTTCCTAGGAAAGATTATGGTTCTCGGGTATCTAATCAATTAATCCCCCAAACCGGGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX2 COX2_TM

Protein Analysis

262

Amino Acids

29.61

Weight (kDa)

5.41

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX2_TM	PF02790	19 - 105	1.1e-29	Cytochrome C oxidase subunit II, transmembrane domain
COX2	PF00116	118 - 242	2.3e-56	Cytochrome C oxidase subunit II, periplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0021909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00160
pyrus_communis	pycom461g00040
rosa_chinensis	RchiOBHm_MTg0498571
rosa_laevigata	RLG00000000458

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	559
Acc36I	ACCTGC	1 cut(s)	559
AccII	CGCG	1 cut(s)	183
AciI	CCGC	2 cut(s)	56, 221
AclWI	GGATC	2 cut(s)	179, 338
AfaI	GTAC	5 cut(s)	516, 561, 579, 609, 642
AfiI	CCNNNNNNNGG	4 cut(s)	587, 776, 777, 778
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	3 cut(s)	365, 722, 785
AluI	AGCT	3 cut(s)	365, 722, 785
AlwI	GGATC	2 cut(s)	179, 338
Ama87I	CYCGRG	1 cut(s)	747
ApeKI	GCWGC	2 cut(s)	53, 86
AseI	ATTAAT	1 cut(s)	764
Asp700I	GAANNNNTTC	1 cut(s)	723
AspA2I	CCTAGG	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	261
AsuC2I	CCSGG	1 cut(s)	778
AvaI	CYCGRG	1 cut(s)	747
AvaII	GGWCC	1 cut(s)	261
AvrII	CCTAGG	1 cut(s)	728
AxyI	CCTNAGG	1 cut(s)	586
BbvI	GCAGC	2 cut(s)	65, 98
BccI	CCATC	1 cut(s)	310
BciT130I	CCWGG	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	778
BfaI	CTAG	4 cut(s)	17, 273, 467, 729
BfuAI	ACCTGC	1 cut(s)	559
BglII	AGATCT	1 cut(s)	627
BisI	GCNGC	2 cut(s)	54, 87
BlnI	CCTAGG	1 cut(s)	728
BlsI	GCNGC	2 cut(s)	55, 88
Bme1390I	CCNGG	2 cut(s)	612, 778
Bme18I	GGWCC	1 cut(s)	261
BmeT110I	CYCGRG	1 cut(s)	747
BmgT120I	GGNCC	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	2 cut(s)	612, 778
BmsI	GCATC	3 cut(s)	40, 90, 592
BpuMI	CCSGG	1 cut(s)	778
BsaAI	YACGTR	1 cut(s)	536
BsaJI	CCNNGG	3 cut(s)	62, 728, 777
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bsc4I	CCNNNNNNNGG	4 cut(s)	587, 776, 777, 778
Bse21I	CCTNAGG	1 cut(s)	586
Bse3DI	GCAATG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	3 cut(s)	62, 728, 777
BseGI	GGATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	4 cut(s)	587, 776, 777, 778
BseMI	GCAATG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	600
BseXI	GCAGC	2 cut(s)	65, 98
BsgI	GTGCAG	1 cut(s)	691
Bsh1236I	CGCG	1 cut(s)	183
BsiHKCI	CYCGRG	1 cut(s)	747
BsiSI	CCGG	1 cut(s)	777
BslI	CCNNNNNNNGG	4 cut(s)	587, 776, 777, 778
BsoBI	CYCGRG	1 cut(s)	747
Bsp143I	GATC	4 cut(s)	171, 343, 463, 627
Bsp19I	CCATGG	1 cut(s)	62
BspACI	CCGC	2 cut(s)	56, 221
BspCNI	CTCAG	1 cut(s)	599
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	559
BspPI	GGATC	2 cut(s)	179, 338
BsrDI	GCAATG	1 cut(s)	291
BssECI	CCNNGG	3 cut(s)	62, 728, 777
BssMI	GATC	4 cut(s)	171, 343, 463, 627
BssT1I	CCWWGG	2 cut(s)	62, 728
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	3 cut(s)	413, 426, 443
BstBAI	YACGTR	1 cut(s)	536
BstDEI	CTNAG	1 cut(s)	586
BstDSI	CCRYGG	1 cut(s)	62
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	1 cut(s)	183
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	4 cut(s)	174, 346, 466, 630
BstMBI	GATC	4 cut(s)	171, 343, 463, 627
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	2 cut(s)	610, 776
BstSNI	TACGTA	1 cut(s)	536
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	65, 98
BstX2I	RGATCY	3 cut(s)	171, 343, 627
BstYI	RGATCY	3 cut(s)	171, 343, 627
Bsu36I	CCTNAGG	1 cut(s)	586
BtgI	CCRYGG	1 cut(s)	62
BtsCI	GGATG	1 cut(s)	279
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	2 cut(s)	674, 679
BveI	ACCTGC	1 cut(s)	559
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	261
CseI	GACGC	1 cut(s)	92
CsiI	ACCWGGT	1 cut(s)	610
Csp6I	GTAC	5 cut(s)	515, 560, 578, 608, 641
CviAII	CATG	3 cut(s)	63, 236, 695
CviJI	RGCY	6 cut(s)	350, 365, 521, 575, 722, 785
CviKI_1	RGCY	6 cut(s)	350, 365, 521, 575, 722, 785
CviQI	GTAC	5 cut(s)	515, 560, 578, 608, 641
DdeI	CTNAG	1 cut(s)	586
DpnI	GATC	4 cut(s)	173, 345, 465, 629
DpnII	GATC	4 cut(s)	171, 343, 463, 627
DraI	TTTAAA	1 cut(s)	621
Eco105I	TACGTA	1 cut(s)	536
Eco130I	CCWWGG	2 cut(s)	62, 728
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	1 cut(s)	261
Eco81I	CCTNAGG	1 cut(s)	586
Eco88I	CYCGRG	1 cut(s)	747
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	610
EcoRV	GATATC	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	62, 728
ErhI	CCWWGG	2 cut(s)	62, 728
FaeI	CATG	3 cut(s)	66, 239, 698
FatI	CATG	3 cut(s)	62, 235, 694
FauI	CCCGC	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	54, 87
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	54, 87
FspBI	CTAG	4 cut(s)	17, 273, 467, 729
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	54, 87
HapII	CCGG	1 cut(s)	777
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	66, 239, 698
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HindIII	AAGCTT	1 cut(s)	783
HinfI	GANTC	2 cut(s)	253, 451
HpaII	CCGG	1 cut(s)	777
Hpy166II	GTNNAC	2 cut(s)	499, 658
Hpy188I	TCNGA	6 cut(s)	150, 261, 387, 403, 418, 627
Hpy188III	TCNNGA	7 cut(s)	17, 80, 125, 250, 283, 455, 467
Hpy8I	GTNNAC	2 cut(s)	499, 658
Hpy99I	CGWCG	1 cut(s)	716
HpyAV	CCTTC	2 cut(s)	591, 644
HpyCH4III	ACNGT	3 cut(s)	413, 426, 443
HpyCH4IV	ACGT	2 cut(s)	484, 535
HpyCH4V	TGCA	3 cut(s)	53, 103, 672
HpyF3I	CTNAG	1 cut(s)	586
HpySE526I	ACGT	2 cut(s)	484, 535
Hsp92II	CATG	3 cut(s)	66, 239, 698
HspAI	GCGC	1 cut(s)	183
Kzo9I	GATC	4 cut(s)	171, 343, 463, 627
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	7 cut(s)	360, 468, 531, 564, 573, 597, 624
Lsp1109I	GCAGC	2 cut(s)	65, 98
LweI	GCATC	3 cut(s)	40, 90, 592
MabI	ACCWGGT	1 cut(s)	610
MaeI	CTAG	4 cut(s)	17, 273, 467, 729
MaeII	ACGT	2 cut(s)	484, 535
MaeIII	GTNAC	2 cut(s)	426, 544
MalI	GATC	4 cut(s)	173, 345, 465, 629
MboI	GATC	4 cut(s)	171, 343, 463, 627
MboII	GAAGA	3 cut(s)	130, 248, 470
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	3 cut(s)	171, 343, 627
MluCI	AATT	4 cut(s)	36, 68, 470, 761
MnlI	CCTC	5 cut(s)	41, 152, 325, 573, 595
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	3 cut(s)	620, 764, 787
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	56
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	2 cut(s)	612, 778
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	612
MvnI	CGCG	1 cut(s)	183
NciI	CCSGG	1 cut(s)	778
NcoI	CCATGG	1 cut(s)	62
NdeII	GATC	4 cut(s)	171, 343, 463, 627
NlaIII	CATG	3 cut(s)	66, 239, 698
NlaIV	GGNNCC	1 cut(s)	60
NmuCI	GTSAC	1 cut(s)	426
PaqCI	CACCTGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	253, 451
PkrI	GCNGC	2 cut(s)	55, 88
Ppu21I	YACGTR	1 cut(s)	536
PshBI	ATTAAT	1 cut(s)	764
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	261
PsrI	GAACNNNNNNTAC	2 cut(s)	708, 740
PsuI	RGATCY	3 cut(s)	171, 343, 627
RsaI	GTAC	5 cut(s)	516, 561, 579, 609, 642
RsaNI	GTAC	5 cut(s)	515, 560, 578, 608, 641
RseI	CAYNNNNRTG	1 cut(s)	284
SaqAI	TTAA	3 cut(s)	620, 764, 787
SatI	GCNGC	2 cut(s)	54, 87
Sau3AI	GATC	4 cut(s)	171, 343, 463, 627
Sau96I	GGNCC	1 cut(s)	261
ScrFI	CCNGG	2 cut(s)	612, 778
SexAI	ACCWGGT	1 cut(s)	610
SfaNI	GCATC	3 cut(s)	40, 90, 592
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	1 cut(s)	284
SnaBI	TACGTA	1 cut(s)	536
Sse9I	AATT	4 cut(s)	36, 68, 470, 761
SsiI	CCGC	2 cut(s)	56, 221
SspMI	CTAG	4 cut(s)	17, 273, 467, 729
StyD4I	CCNGG	2 cut(s)	610, 776
StyI	CCWWGG	2 cut(s)	62, 728
TaaI	ACNGT	3 cut(s)	413, 426, 443
TaiI	ACGT	2 cut(s)	487, 538
TaqI	TCGA	1 cut(s)	249
TasI	AATT	4 cut(s)	36, 68, 470, 761
TfiI	GAWTC	2 cut(s)	253, 451
Tru1I	TTAA	3 cut(s)	620, 764, 787
Tru9I	TTAA	3 cut(s)	620, 764, 787
TscAI	CASTG	2 cut(s)	674, 679
TseFI	GTSAC	1 cut(s)	426
TseI	GCWGC	2 cut(s)	53, 86
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	3 cut(s)	224, 280, 435
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	2 cut(s)	674, 679
VpaK11BI	GGWCC	1 cut(s)	261
VspI	ATTAAT	1 cut(s)	764
XagI	CCTNNNNNAGG	1 cut(s)	585
XbaI	TCTAGA	2 cut(s)	16, 466
XmaJI	CCTAGG	1 cut(s)	728
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	4 cut(s)	17, 273, 467, 729

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.