Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0021909

Physical Location & Seq

Genomic Coordinates Reverse (-)

1041977 .. 1043596

Gene Structure 1620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000458

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGATTCTGAAATACTCCTCCGATCGGTTCCGAAAGTCTTTTCTTCACCTTCTCTTCTCGGCATGATCCAGGCGTTCAATCTAGGAGATCAAATCATGGGTTCTCATCCCGGAGAGGCAACGGAACCATGGCAATTAGGATTTCAAGACGCAGCAACCCCTATGATGCAAGGAATAATGGACTTACATCACGATATCTTTTTCTTCCTCATTCTTATTTTGGTTTTCGTATCACGGATCTTGGTTCGCGCTTTATGGCATTTCCACTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGGACCATATTTCCTAGTATCATCCCGATGTTCATTGCTATACCATCATTTGCTCTGTTATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATCGGACTTATGAGTATTCAGACTATAACAGTTCCGATGAACAGTCACTCACTTTTGACAGTTATACGATTCCAGAAGATGATCTAGAATTGGGTCAATCACGTTTATTAGAAGTGGACAATAGAGTGGTTGTACCAGCCAAAACTCATCTACGTATTATTGTAACACCTGCTGATGTACCTCATAGTTGGGCTGTACCTTCCTCAGGTGTCAAATGTGATGCTGTACCTGGTCGTTTAAATCAGATCTCTATTTCGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGTGAGATTTGTGGAACTAATCATGCCTTTACGCCTATCGTCGTAGAAGCTGTTCCTAGGAAAGATTATGGTTCTCGGGTATCTAATCAATTAATCCCCCAAACCGGGGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005751 GO:0006091 GO:0006119 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0017144 GO:0019637 GO:0019693 GO:0019866 GO:0022900 GO:0022904 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0034641 GO:0042773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045277 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070069 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1901135 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04260 ko04714 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04260 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

COX2 COX2_TM

Protein Analysis

285

Amino Acids

31.86

Weight (kDa)

5.4

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COX2_TM	PF02790	42 - 127	2.2e-29	Cytochrome C oxidase subunit II, transmembrane domain
COX2	PF00116	140 - 264	2.8e-56	Cytochrome C oxidase subunit II, periplasmic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021909)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00160
pyrus_communis	pycom461g00040
rosa_chinensis	RchiOBHm_MTg0498571
rosa_laevigata	RLG00000000458

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	625
Acc36I	ACCTGC	1 cut(s)	625
AccII	CGCG	1 cut(s)	249
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	3 cut(s)	61, 245, 404
AfaI	GTAC	5 cut(s)	582, 627, 645, 675, 708
AfiI	CCNNNNNNNGG	5 cut(s)	25, 653, 842, 843, 844
AgsI	TTSAA	2 cut(s)	79, 146
AjnI	CCWGG	2 cut(s)	69, 676
AluBI	AGCT	3 cut(s)	431, 788, 851
AluI	AGCT	3 cut(s)	431, 788, 851
AlwI	GGATC	3 cut(s)	61, 245, 404
Ama87I	CYCGRG	1 cut(s)	813
ApeKI	GCWGC	1 cut(s)	152
AseI	ATTAAT	1 cut(s)	830
Asp700I	GAANNNNTTC	1 cut(s)	789
AspA2I	CCTAGG	1 cut(s)	794
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	327
AsuC2I	CCSGG	2 cut(s)	111, 844
AsuHPI	GGTGA	1 cut(s)	39
AvaI	CYCGRG	1 cut(s)	813
AvaII	GGWCC	1 cut(s)	327
AvrII	CCTAGG	1 cut(s)	794
AxyI	CCTNAGG	1 cut(s)	652
BbvI	GCAGC	1 cut(s)	164
BccI	CCATC	1 cut(s)	376
BciT130I	CCWGG	2 cut(s)	71, 678
BcnI	CCSGG	2 cut(s)	111, 844
BfaI	CTAG	4 cut(s)	83, 339, 533, 795
BfuAI	ACCTGC	1 cut(s)	625
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	1 cut(s)	153
BlnI	CCTAGG	1 cut(s)	794
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	4 cut(s)	71, 111, 678, 844
Bme18I	GGWCC	1 cut(s)	327
BmeT110I	CYCGRG	1 cut(s)	813
BmgT120I	GGNCC	1 cut(s)	327
BmiI	GGNNCC	2 cut(s)	30, 126
BmrFI	CCNGG	4 cut(s)	71, 111, 678, 844
BmsI	GCATC	2 cut(s)	156, 658
BpuMI	CCSGG	2 cut(s)	111, 844
BsaAI	YACGTR	1 cut(s)	602
BsaJI	CCNNGG	3 cut(s)	128, 794, 843
Bsc4I	CCNNNNNNNGG	5 cut(s)	25, 653, 842, 843, 844
Bse21I	CCTNAGG	1 cut(s)	652
Bse3DI	GCAATG	1 cut(s)	357
BseBI	CCWGG	2 cut(s)	71, 678
BseDI	CCNNGG	3 cut(s)	128, 794, 843
BseGI	GGATG	2 cut(s)	106, 345
BseLI	CCNNNNNNNGG	5 cut(s)	25, 653, 842, 843, 844
BseMI	GCAATG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	666
BseRI	GAGGAG	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	164
BsgI	GTGCAG	1 cut(s)	757
Bsh1236I	CGCG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	26
BsiHKCI	CYCGRG	1 cut(s)	813
BsiSI	CCGG	2 cut(s)	111, 843
BslI	CCNNNNNNNGG	5 cut(s)	25, 653, 842, 843, 844
BsoBI	CYCGRG	1 cut(s)	813
Bsp143I	GATC	7 cut(s)	23, 66, 88, 237, 409, 529, 693
Bsp19I	CCATGG	1 cut(s)	128
BspACI	CCGC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	665
BspFNI	CGCG	1 cut(s)	249
BspLI	GGNNCC	2 cut(s)	30, 126
BspMI	ACCTGC	1 cut(s)	625
BspPI	GGATC	3 cut(s)	61, 245, 404
BsrDI	GCAATG	1 cut(s)	357
BssECI	CCNNGG	3 cut(s)	128, 794, 843
BssMI	GATC	7 cut(s)	23, 66, 88, 237, 409, 529, 693
BssT1I	CCWWGG	2 cut(s)	128, 794
Bst2UI	CCWGG	2 cut(s)	71, 678
Bst4CI	ACNGT	3 cut(s)	479, 492, 509
Bst6I	CTCTTC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	602
BstDEI	CTNAG	1 cut(s)	652
BstDSI	CCRYGG	1 cut(s)	128
BstENI	CCTNNNNNAGG	1 cut(s)	651
BstF5I	GGATG	2 cut(s)	106, 345
BstFNI	CGCG	1 cut(s)	249
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	7 cut(s)	26, 69, 91, 240, 412, 532, 696
BstMBI	GATC	7 cut(s)	23, 66, 88, 237, 409, 529, 693
BstMCI	CGRYCG	1 cut(s)	26
BstNI	CCWGG	2 cut(s)	71, 678
BstSCI	CCNGG	4 cut(s)	69, 109, 676, 842
BstSNI	TACGTA	1 cut(s)	602
BstUI	CGCG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	164
BstX2I	RGATCY	3 cut(s)	237, 409, 693
BstYI	RGATCY	3 cut(s)	237, 409, 693
Bsu36I	CCTNAGG	1 cut(s)	652
BtgI	CCRYGG	1 cut(s)	128
BtsCI	GGATG	2 cut(s)	106, 345
BtsI	GCAGTG	1 cut(s)	745
BtsIMutI	CAGTG	2 cut(s)	740, 745
BveI	ACCTGC	1 cut(s)	625
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	327
CseI	GACGC	1 cut(s)	158
CsiI	ACCWGGT	1 cut(s)	676
Csp6I	GTAC	5 cut(s)	581, 626, 644, 674, 707
CviAII	CATG	5 cut(s)	64, 97, 129, 302, 761
CviJI	RGCY	6 cut(s)	416, 431, 587, 641, 788, 851
CviKI_1	RGCY	6 cut(s)	416, 431, 587, 641, 788, 851
CviQI	GTAC	5 cut(s)	581, 626, 644, 674, 707
DdeI	CTNAG	1 cut(s)	652
DpnI	GATC	7 cut(s)	25, 68, 90, 239, 411, 531, 695
DpnII	GATC	7 cut(s)	23, 66, 88, 237, 409, 529, 693
DraI	TTTAAA	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
Eco105I	TACGTA	1 cut(s)	602
Eco130I	CCWWGG	2 cut(s)	128, 794
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	327
Eco81I	CCTNAGG	1 cut(s)	652
Eco88I	CYCGRG	1 cut(s)	813
EcoNI	CCTNNNNNAGG	1 cut(s)	651
EcoRII	CCWGG	2 cut(s)	69, 676
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	2 cut(s)	128, 794
ErhI	CCWWGG	2 cut(s)	128, 794
FaeI	CATG	5 cut(s)	67, 100, 132, 305, 764
FatI	CATG	5 cut(s)	63, 96, 128, 301, 760
FauI	CCCGC	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	2 cut(s)	93, 332
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	4 cut(s)	83, 339, 533, 795
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	1 cut(s)	153
HapII	CCGG	2 cut(s)	111, 843
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	5 cut(s)	67, 100, 132, 305, 764
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	849
HinfI	GANTC	3 cut(s)	5, 319, 517
HpaII	CCGG	2 cut(s)	111, 843
HphI	GGTGA	1 cut(s)	39
Hpy166II	GTNNAC	2 cut(s)	565, 724
Hpy188I	TCNGA	8 cut(s)	10, 23, 33, 327, 453, 469, 484, 693
Hpy188III	TCNNGA	6 cut(s)	146, 191, 316, 349, 521, 533
Hpy8I	GTNNAC	2 cut(s)	565, 724
Hpy99I	CGWCG	1 cut(s)	782
HpyAV	CCTTC	3 cut(s)	60, 657, 710
HpyCH4III	ACNGT	3 cut(s)	479, 492, 509
HpyCH4IV	ACGT	2 cut(s)	550, 601
HpyCH4V	TGCA	2 cut(s)	169, 738
HpyF3I	CTNAG	1 cut(s)	652
HpySE526I	ACGT	2 cut(s)	550, 601
Hsp92II	CATG	5 cut(s)	67, 100, 132, 305, 764
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	7 cut(s)	23, 66, 88, 237, 409, 529, 693
Lsp1109I	GCAGC	1 cut(s)	164
LweI	GCATC	2 cut(s)	156, 658
MabI	ACCWGGT	1 cut(s)	676
MaeI	CTAG	4 cut(s)	83, 339, 533, 795
MaeII	ACGT	2 cut(s)	550, 601
MaeIII	GTNAC	2 cut(s)	492, 610
MalI	GATC	7 cut(s)	25, 68, 90, 239, 411, 531, 695
MboI	GATC	7 cut(s)	23, 66, 88, 237, 409, 529, 693
MboII	GAAGA	5 cut(s)	36, 47, 196, 314, 536
MflI	RGATCY	3 cut(s)	237, 409, 693
MluCI	AATT	3 cut(s)	134, 536, 827
MnlI	CCTC	6 cut(s)	29, 109, 218, 391, 639, 661
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	3 cut(s)	686, 830, 853
MslI	CAYNNNNRTG	1 cut(s)	350
MspI	CCGG	2 cut(s)	111, 843
MspR9I	CCNGG	4 cut(s)	71, 111, 678, 844
MvaI	CCWGG	2 cut(s)	71, 678
MvnI	CGCG	1 cut(s)	249
NciI	CCSGG	2 cut(s)	111, 844
NcoI	CCATGG	1 cut(s)	128
NdeII	GATC	7 cut(s)	23, 66, 88, 237, 409, 529, 693
NlaIII	CATG	5 cut(s)	67, 100, 132, 305, 764
NlaIV	GGNNCC	2 cut(s)	30, 126
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	492
PaqCI	CACCTGC	1 cut(s)	625
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	3 cut(s)	5, 319, 517
PfoI	TCCNGGA	1 cut(s)	109
PkrI	GCNGC	1 cut(s)	154
Ple19I	CGATCG	1 cut(s)	26
Ppu21I	YACGTR	1 cut(s)	602
PshBI	ATTAAT	1 cut(s)	830
Psp6I	CCWGG	2 cut(s)	69, 676
PspGI	CCWGG	2 cut(s)	69, 676
PspN4I	GGNNCC	2 cut(s)	30, 126
PspPI	GGNCC	1 cut(s)	327
PsrI	GAACNNNNNNTAC	2 cut(s)	774, 806
PsuI	RGATCY	3 cut(s)	237, 409, 693
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	5 cut(s)	582, 627, 645, 675, 708
RsaNI	GTAC	5 cut(s)	581, 626, 644, 674, 707
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	686, 830, 853
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	7 cut(s)	23, 66, 88, 237, 409, 529, 693
Sau96I	GGNCC	1 cut(s)	327
ScrFI	CCNGG	4 cut(s)	71, 111, 678, 844
SexAI	ACCWGGT	1 cut(s)	676
SfaNI	GCATC	2 cut(s)	156, 658
SinI	GGWCC	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	350
SnaBI	TACGTA	1 cut(s)	602
Sse9I	AATT	3 cut(s)	134, 536, 827
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	4 cut(s)	83, 339, 533, 795
StyD4I	CCNGG	4 cut(s)	69, 109, 676, 842
StyI	CCWWGG	2 cut(s)	128, 794
TaaI	ACNGT	3 cut(s)	479, 492, 509
TaiI	ACGT	2 cut(s)	553, 604
TaqI	TCGA	1 cut(s)	315
TasI	AATT	3 cut(s)	134, 536, 827
TfiI	GAWTC	3 cut(s)	5, 319, 517
Tru1I	TTAA	3 cut(s)	686, 830, 853
Tru9I	TTAA	3 cut(s)	686, 830, 853
TscAI	CASTG	2 cut(s)	740, 745
TseFI	GTSAC	1 cut(s)	492
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	3 cut(s)	290, 346, 501
TspGWI	ACGGA	2 cut(s)	137, 250
TspRI	CASTG	2 cut(s)	740, 745
VpaK11BI	GGWCC	1 cut(s)	327
VspI	ATTAAT	1 cut(s)	830
XagI	CCTNNNNNAGG	1 cut(s)	651
XbaI	TCTAGA	1 cut(s)	532
XmaJI	CCTAGG	1 cut(s)	794
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	4 cut(s)	83, 339, 533, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.