Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0021920

Physical Location & Seq

Genomic Coordinates Reverse (-)

82028 .. 83116

Gene Structure 1089 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

ATMG00290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGTGGCTGCTTAAAAAACTGATTCAACGAGATATAGATTTGTCCCCATTAAGATTTCAAACTTGTCGTCTACTTTCAGGAAATGTTCGGAACAGAGAACTGACAATAATACAACGCCGCATTCTCCGAAGATTGAGGAACAGGAAGAGATCTATTAAGAAGAGAAAGATTTATCCGAAAAAATATCTTACCAGTTATATACAATTACAAACTACACGAAAGTTGCCCCTTTTTCATGGGGATTTACCCATCACAGAGATGCACAGAGGAACAAAACGAACTTCATATATCCCTTTTCCACTCAATCCAGAAACAAGATTTGACGTTATTCCGCTTCGTCTCCATTTTCTTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTGTGAATAAAGGAATGGTAAGCATTACTCATTTTAAACTTTCCCACGGTGATATAATATCTTTTCAAGAAAATAACGCGATAATACGCGGTGAAGAAATAAGGAGATCTTTCTATAAAGAAATTTCAGTTGAAAAAATCATAGGCAAATTACTGCATCAACCGCTAAGAATGTGGAGAAGAAGCAAAACTGAATGGTTCCACCTACTCAAAACTAAGAGGGGATGCCGCCTACTACTAAAATCCCGGTTTTTGCAACAGTTGCGTTCTTCTATGCAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCCGAAAAAGTATGCTTAGGAAGTTCCTTCGCTGAGCACAAGAGAATGAAGAGGAATTTGTTAAAATCCCTATTCTTATCGAAGAGAAGGAAGGATAAAAACCTAAATCTTCCTACTCGAACAATCAGTCCTATAGTTTACAACTCTTCTTTATCTTTATATAGTAATTCGACCTATTGCTTCGCATCCCCCCATAAGTTGACTATGAAGAGAAGAATCAAAAGGATCGAACTACCTACTCATTATTCGGAGGTTAATCATAGAACACCAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCATATCCCTCACGACATAAGATTAAAAGATCCAAACCTTCCTCTTCGGAGCAGAAACGGACGTGGCCAAAACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0006450 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0019843 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Protein Analysis

362

Amino Acids

43.03

Weight (kDa)

11.17

Isoelectric Point (pI)

64.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S4	PF01479	106 - 152	1.5e-07	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07734 ATMG00290
rosa_chinensis	RchiOBHm_MTg0499001
rosa_samantha	Rh1BG018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	70
AccII	CGCG	2 cut(s)	476, 486
AciI	CCGC	5 cut(s)	118, 332, 486, 560, 625
AclWI	GGATC	4 cut(s)	702, 715, 941, 1034
AcoI	YGGCCR	1 cut(s)	1075
AcsI	RAATTY	2 cut(s)	519, 763
AfiI	CCNNNNNNNGG	1 cut(s)	1007
AgsI	TTSAA	5 cut(s)	26, 59, 353, 464, 530
AjiI	CACGTC	1 cut(s)	1073
AloI	GAACNNNNNNTCC	2 cut(s)	820, 852
AluBI	AGCT	1 cut(s)	983
AluI	AGCT	1 cut(s)	983
Alw21I	GWGCWC	1 cut(s)	747
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	4 cut(s)	702, 715, 941, 1034
AoxI	GGCC	1 cut(s)	1075
ApeKI	GCWGC	2 cut(s)	7, 373
ApoI	RAATTY	2 cut(s)	519, 763
ArsI	GACNNNNNNTTYG	4 cut(s)	52, 84, 820, 852
Asp700I	GAANNNNTTC	1 cut(s)	357
AspS9I	GGNCC	1 cut(s)	998
AsuC2I	CCSGG	1 cut(s)	643
AsuHPI	GGTGA	2 cut(s)	458, 500
AvaII	GGWCC	1 cut(s)	998
BalI	TGGCCA	1 cut(s)	1077
BamHI	GGATCC	1 cut(s)	707
BbsI	GAAGAC	1 cut(s)	687
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	1 cut(s)	257
BcnI	CCSGG	1 cut(s)	643
BcoDI	GTCTC	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	840
BglII	AGATCT	2 cut(s)	149, 503
BisI	GCNGC	4 cut(s)	8, 118, 374, 625
BlpI	GCTNAGC	1 cut(s)	741
BlsI	GCNGC	4 cut(s)	9, 119, 375, 626
Bme1390I	CCNGG	1 cut(s)	643
Bme18I	GGWCC	1 cut(s)	998
BmgBI	CACGTC	1 cut(s)	1073
BmgT120I	GGNCC	1 cut(s)	998
BmiI	GGNNCC	2 cut(s)	596, 709
BmrFI	CCNGG	1 cut(s)	643
BmsI	GCATC	4 cut(s)	249, 562, 611, 902
BpiI	GAAGAC	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	724
Bpu1102I	GCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	348
BpuMI	CCSGG	1 cut(s)	643
BsaJI	CCNNGG	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	1007
Bse1I	ACTGG	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	626, 893
BseLI	CCNNNNNNNGG	1 cut(s)	1007
BseMII	CTCAG	1 cut(s)	732
BseNI	ACTGG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	385
Bsh1236I	CGCG	2 cut(s)	476, 486
BshFI	GGCC	1 cut(s)	1077
BsiHKAI	GWGCWC	1 cut(s)	747
BsiSI	CCGG	1 cut(s)	643
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	1007
BsmAI	GTCTC	1 cut(s)	344
BsmBI	CGTCTC	1 cut(s)	344
BsmFI	GGGAC	1 cut(s)	28
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	1077
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	5 cut(s)	149, 503, 707, 933, 1039
Bsp1720I	GCTNAGC	1 cut(s)	741
BspACI	CCGC	5 cut(s)	118, 332, 486, 560, 625
BspANI	GGCC	1 cut(s)	1077
BspCNI	CTCAG	1 cut(s)	733
BspFNI	CGCG	2 cut(s)	476, 486
BspLI	GGNNCC	2 cut(s)	596, 709
BspPI	GGATC	4 cut(s)	702, 715, 941, 1034
BsrI	ACTGG	1 cut(s)	192
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	5 cut(s)	149, 503, 707, 933, 1039
Bst4CI	ACNGT	2 cut(s)	446, 657
Bst6I	CTCTTC	7 cut(s)	140, 155, 752, 785, 859, 911, 1059
BstAPI	GCANNNNNTGC	1 cut(s)	658
BstDEI	CTNAG	5 cut(s)	563, 612, 685, 724, 741
BstDSI	CCRYGG	1 cut(s)	442
BstENI	CCTNNNNNAGG	1 cut(s)	1005
BstF5I	GGATG	2 cut(s)	626, 893
BstFNI	CGCG	2 cut(s)	476, 486
BstKTI	GATC	5 cut(s)	152, 506, 710, 936, 1042
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	5 cut(s)	149, 503, 707, 933, 1039
BstMWI	GCNNNNNNNGC	2 cut(s)	559, 658
BstSCI	CCNGG	1 cut(s)	641
BstSFI	CTRYAG	1 cut(s)	840
BstUI	CGCG	2 cut(s)	476, 486
BstV1I	GCAGC	1 cut(s)	385
BstV2I	GAAGAC	1 cut(s)	687
BstX2I	RGATCY	4 cut(s)	149, 503, 707, 1039
BstYI	RGATCY	4 cut(s)	149, 503, 707, 1039
BsuRI	GGCC	1 cut(s)	1077
BtgI	CCRYGG	1 cut(s)	442
BtrI	CACGTC	1 cut(s)	1073
BtsCI	GGATG	2 cut(s)	626, 893
Cfr13I	GGNCC	1 cut(s)	998
CspCI	CAANNNNNGTGG	2 cut(s)	966, 1001
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	4 cut(s)	7, 376, 983, 1077
CviKI_1	RGCY	4 cut(s)	7, 376, 983, 1077
DdeI	CTNAG	5 cut(s)	563, 612, 685, 724, 741
DpnI	GATC	5 cut(s)	151, 505, 709, 935, 1041
DpnII	GATC	5 cut(s)	149, 503, 707, 933, 1039
DraI	TTTAAA	1 cut(s)	433
EaeI	YGGCCR	1 cut(s)	1075
Eam1104I	CTCTTC	7 cut(s)	140, 155, 752, 785, 859, 911, 1059
EarI	CTCTTC	7 cut(s)	140, 155, 752, 785, 859, 911, 1059
Eco47I	GGWCC	1 cut(s)	998
EcoNI	CCTNNNNNAGG	1 cut(s)	1005
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	1 cut(s)	239
FalI	AAGNNNNNCTT	2 cut(s)	490, 522
FaqI	GGGAC	1 cut(s)	28
FatI	CATG	1 cut(s)	235
FblI	GTMKAC	1 cut(s)	70
Fnu4HI	GCNGC	4 cut(s)	8, 118, 374, 625
FokI	GGATG	2 cut(s)	633, 880
Fsp4HI	GCNGC	4 cut(s)	8, 118, 374, 625
GluI	GCNGC	4 cut(s)	8, 118, 374, 625
HaeIII	GGCC	1 cut(s)	1077
HapII	CCGG	1 cut(s)	643
Hin1II	CATG	1 cut(s)	239
HincII	GTYRAC	1 cut(s)	909
HindII	GTYRAC	1 cut(s)	909
HinfI	GANTC	2 cut(s)	22, 924
HpaII	CCGG	1 cut(s)	643
HphI	GGTGA	2 cut(s)	458, 500
Hpy166II	GTNNAC	3 cut(s)	71, 847, 909
Hpy188I	TCNGA	6 cut(s)	90, 128, 177, 712, 958, 1059
Hpy188III	TCNNGA	5 cut(s)	78, 308, 350, 464, 1022
Hpy8I	GTNNAC	3 cut(s)	71, 847, 909
HpyAV	CCTTC	5 cut(s)	384, 745, 789, 793, 1058
HpyCH4III	ACNGT	2 cut(s)	446, 657
HpyCH4IV	ACGT	2 cut(s)	324, 1072
HpyCH4V	TGCA	4 cut(s)	262, 553, 652, 673
HpyF10VI	GCNNNNNNNGC	2 cut(s)	559, 658
HpyF3I	CTNAG	5 cut(s)	563, 612, 685, 724, 741
HpySE526I	ACGT	2 cut(s)	324, 1072
Hsp92II	CATG	1 cut(s)	239
Kzo9I	GATC	5 cut(s)	149, 503, 707, 933, 1039
LmnI	GCTCC	1 cut(s)	1059
LpnPI	CCDG	5 cut(s)	63, 127, 205, 321, 656
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	4 cut(s)	249, 562, 611, 902
MaeII	ACGT	2 cut(s)	324, 1072
MalI	GATC	5 cut(s)	151, 505, 709, 935, 1041
MboI	GATC	5 cut(s)	149, 503, 707, 933, 1039
MflI	RGATCY	4 cut(s)	149, 503, 707, 1039
MhlI	GDGCHC	1 cut(s)	747
MlsI	TGGCCA	1 cut(s)	1077
MluCI	AATT	5 cut(s)	203, 519, 545, 763, 874
MluNI	TGGCCA	1 cut(s)	1077
MnlI	CCTC	8 cut(s)	129, 260, 372, 609, 753, 952, 1029, 1062
Mox20I	TGGCCA	1 cut(s)	1077
MroXI	GAANNNNTTC	1 cut(s)	357
MscI	TGGCCA	1 cut(s)	1077
MseI	TTAA	7 cut(s)	12, 50, 156, 432, 770, 963, 1034
MslI	CAYNNNNRTG	1 cut(s)	257
Msp20I	TGGCCA	1 cut(s)	1077
MspI	CCGG	1 cut(s)	643
MspR9I	CCNGG	1 cut(s)	643
Mva1269I	GAATGC	1 cut(s)	120
MvnI	CGCG	2 cut(s)	476, 486
MwoI	GCNNNNNNNGC	2 cut(s)	559, 658
NciI	CCSGG	1 cut(s)	643
NdeII	GATC	5 cut(s)	149, 503, 707, 933, 1039
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	2 cut(s)	596, 709
PctI	GAATGC	1 cut(s)	120
PdmI	GAANNNNTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	22, 924
PkrI	GCNGC	4 cut(s)	9, 119, 375, 626
PspN4I	GGNNCC	2 cut(s)	596, 709
PspPI	GGNCC	1 cut(s)	998
PsuI	RGATCY	4 cut(s)	149, 503, 707, 1039
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	7 cut(s)	12, 50, 156, 432, 770, 963, 1034
SatI	GCNGC	4 cut(s)	8, 118, 374, 625
Sau3AI	GATC	5 cut(s)	149, 503, 707, 933, 1039
Sau96I	GGNCC	1 cut(s)	998
ScrFI	CCNGG	1 cut(s)	643
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	4 cut(s)	249, 562, 611, 902
SfcI	CTRYAG	1 cut(s)	840
SinI	GGWCC	1 cut(s)	998
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	1 cut(s)	363
SmoI	CTYRAG	1 cut(s)	363
Sse9I	AATT	5 cut(s)	203, 519, 545, 763, 874
SsiI	CCGC	5 cut(s)	118, 332, 486, 560, 625
StyD4I	CCNGG	1 cut(s)	641
TaaI	ACNGT	2 cut(s)	446, 657
TaiI	ACGT	2 cut(s)	327, 1075
TaqI	TCGA	5 cut(s)	388, 788, 826, 878, 936
TasI	AATT	5 cut(s)	203, 519, 545, 763, 874
TauI	GCSGC	2 cut(s)	120, 627
TfiI	GAWTC	2 cut(s)	22, 924
Tru1I	TTAA	7 cut(s)	12, 50, 156, 432, 770, 963, 1034
Tru9I	TTAA	7 cut(s)	12, 50, 156, 432, 770, 963, 1034
TseI	GCWGC	2 cut(s)	7, 373
TspDTI	ATGAA	4 cut(s)	224, 273, 770, 929
TspGWI	ACGGA	1 cut(s)	1083
VpaK11BI	GGWCC	1 cut(s)	998
XagI	CCTNNNNNAGG	1 cut(s)	1005
XapI	RAATTY	2 cut(s)	519, 763
XmiI	GTMKAC	1 cut(s)	70
XmnI	GAANNNNTTC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.