Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021920

Physical Location & Seq

Genomic Coordinates Reverse (-)

224270 .. 226451

Gene Structure 2182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15652

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGCCTACGAGACGGCTTATGGTCTTGCACAGGAAAGTCTGTTGGGCAGCAGAAACTCCATGGAGTGGAGTGACGCGAAGTTCCTTTCTAAAGTCTTTTTTTAGAGGGGGTCGTGGAAAAATTGGGTTCGACTCCCCTAGCCCCGATGTAGCGAAAAAGACTGATTCAACGAGATATGCCTTGCCTGCATTAAGATTTAAAACTTGTCGTCTACTTTCAGGAAATGTTCGGAACAGAGAACTTACAATAATACAACGCCGCATTCTCCGAAGATTGAGGAACAAGAAGAGATCTATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAATCACAAACTACACGAAAGTTGCCCCTTTTTCATGGGGATTTACCCATCACAGAGATGCACAGAGGAACAGAGCGAACTTCATATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTTGTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTGTGAATAATGGAATGGTAAGCATTACTCATTTAAAAGTGTCCCACGCTGATCTAATATTTTTTCAAGAAAATGACGCGAGAATCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATCAGTTGAAAAAATCATAGGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAACAAAAACAGAATGGTTCCACCTACTCAAAACTCAGAGGGGATGCCGTCTACTACTAAAATCCCGGTTTTTGCAACAGTTGGGTTCTTCTATGCAAGAAGAAGACTTAGAAAAAACAAAGAGGTTTGGATCCGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTCAAATCCCTATTCTTATCGAAGAGAAGGAACGAGAAAAACCGAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGAAGAATCAAAAGGATTGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCTAAACCTTCCTCTTCGGAGCGGAAACGGACATGGCCAAAACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0006450 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0019843 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Protein Analysis

408

Amino Acids

47.88

Weight (kDa)

11.0

Isoelectric Point (pI)

63.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S4	PF01479	158 - 198	1.3e-06	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07734 ATMG00290
rosa_chinensis	RchiOBHm_MTg0499001
rosa_samantha	Rh1BG018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	65
AccBSI	CCGCTC	1 cut(s)	1200
AccI	GTMKAC	2 cut(s)	211, 766
AccII	CGCG	3 cut(s)	76, 614, 624
AciI	CCGC	5 cut(s)	259, 622, 624, 1029, 1200
AclWI	GGATC	3 cut(s)	699, 840, 853
AcoI	YGGCCR	1 cut(s)	1213
AcsI	RAATTY	2 cut(s)	683, 901
AfiI	CCNNNNNNNGG	2 cut(s)	65, 1145
AgsI	TTSAA	6 cut(s)	168, 602, 668, 916, 1076, 1174
AjnI	CCWGG	1 cut(s)	687
AloI	GAACNNNNNNTCC	2 cut(s)	964, 996
AluBI	AGCT	1 cut(s)	1121
AluI	AGCT	1 cut(s)	1121
Alw21I	GWGCWC	1 cut(s)	885
Alw26I	GTCTC	2 cut(s)	4, 482
AlwI	GGATC	3 cut(s)	699, 840, 853
AoxI	GGCC	1 cut(s)	1213
ApeKI	GCWGC	2 cut(s)	47, 511
ApoI	RAATTY	2 cut(s)	683, 901
ArsI	GACNNNNNNTTYG	2 cut(s)	964, 996
Asp700I	GAANNNNTTC	1 cut(s)	495
AspS9I	GGNCC	1 cut(s)	1136
AsuC2I	CCSGG	2 cut(s)	698, 781
AsuHPI	GGTGA	3 cut(s)	638, 686, 1111
AvaII	GGWCC	1 cut(s)	1136
BalI	TGGCCA	1 cut(s)	1215
BamHI	GGATCC	1 cut(s)	845
BbsI	GAAGAC	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	885
BbvI	GCAGC	2 cut(s)	59, 523
BccI	CCATC	2 cut(s)	395, 1047
BceAI	ACGGC	2 cut(s)	29, 747
BcgI	CGANNNNNNTGC	2 cut(s)	856, 890
BciT130I	CCWGG	1 cut(s)	689
BcnI	CCSGG	2 cut(s)	698, 781
BcoDI	GTCTC	2 cut(s)	4, 482
BfaI	CTAG	1 cut(s)	138
BfmI	CTRYAG	1 cut(s)	984
BglII	AGATCT	3 cut(s)	290, 641, 1177
BisI	GCNGC	3 cut(s)	48, 259, 512
BlpI	GCTNAGC	1 cut(s)	879
BlsI	GCNGC	3 cut(s)	49, 260, 513
Bme1390I	CCNGG	3 cut(s)	689, 698, 781
Bme18I	GGWCC	1 cut(s)	1136
BmgT120I	GGNCC	1 cut(s)	1136
BmiI	GGNNCC	2 cut(s)	734, 847
BmrFI	CCNGG	3 cut(s)	689, 698, 781
BmsI	GCATC	3 cut(s)	387, 749, 1040
BpiI	GAAGAC	1 cut(s)	825
Bpu10I	CCTNAGC	1 cut(s)	862
Bpu1102I	GCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	1 cut(s)	486
BpuMI	CCSGG	2 cut(s)	698, 781
BsaJI	CCNNGG	2 cut(s)	59, 622
BsaWI	WCCGGW	1 cut(s)	469
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 1145
BseBI	CCWGG	1 cut(s)	689
BseDI	CCNNGG	2 cut(s)	59, 622
BseGI	GGATG	4 cut(s)	336, 764, 1031, 1152
BseLI	CCNNNNNNNGG	2 cut(s)	65, 1145
BseMII	CTCAG	2 cut(s)	764, 870
BseXI	GCAGC	2 cut(s)	59, 523
Bsh1236I	CGCG	3 cut(s)	76, 614, 624
BshFI	GGCC	1 cut(s)	1215
BsiHKAI	GWGCWC	1 cut(s)	885
BsiSI	CCGG	3 cut(s)	470, 698, 781
BslFI	GGGAC	1 cut(s)	562
BslI	CCNNNNNNNGG	2 cut(s)	65, 1145
BsmAI	GTCTC	2 cut(s)	4, 482
BsmBI	CGTCTC	2 cut(s)	4, 482
BsmFI	GGGAC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	1215
Bsp1286I	GDGCHC	1 cut(s)	885
Bsp143I	GATC	7 cut(s)	290, 455, 586, 641, 691, 845, 1177
Bsp1720I	GCTNAGC	1 cut(s)	879
Bsp19I	CCATGG	1 cut(s)	59
BspACI	CCGC	5 cut(s)	259, 622, 624, 1029, 1200
BspANI	GGCC	1 cut(s)	1215
BspCNI	CTCAG	2 cut(s)	763, 871
BspFNI	CGCG	3 cut(s)	76, 614, 624
BspLI	GGNNCC	2 cut(s)	734, 847
BspPI	GGATC	3 cut(s)	699, 840, 853
BsrBI	CCGCTC	1 cut(s)	1200
BssECI	CCNNGG	2 cut(s)	59, 622
BssMI	GATC	7 cut(s)	290, 455, 586, 641, 691, 845, 1177
BssT1I	CCWWGG	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	689
Bst4CI	ACNGT	2 cut(s)	332, 795
Bst6I	CTCTTC	6 cut(s)	281, 890, 929, 1003, 1049, 1197
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	4 cut(s)	750, 823, 862, 879
BstDSI	CCRYGG	2 cut(s)	59, 622
BstENI	CCTNNNNNAGG	1 cut(s)	1143
BstF5I	GGATG	4 cut(s)	336, 764, 1031, 1152
BstFNI	CGCG	3 cut(s)	76, 614, 624
BstKTI	GATC	7 cut(s)	293, 458, 589, 644, 694, 848, 1180
BstMAI	GTCTC	2 cut(s)	4, 482
BstMBI	GATC	7 cut(s)	290, 455, 586, 641, 691, 845, 1177
BstMWI	GCNNNNNNNGC	1 cut(s)	185
BstNI	CCWGG	1 cut(s)	689
BstSCI	CCNGG	3 cut(s)	687, 696, 779
BstSFI	CTRYAG	1 cut(s)	984
BstUI	CGCG	3 cut(s)	76, 614, 624
BstV1I	GCAGC	2 cut(s)	59, 523
BstV2I	GAAGAC	1 cut(s)	825
BstX2I	RGATCY	4 cut(s)	290, 641, 845, 1177
BstYI	RGATCY	4 cut(s)	290, 641, 845, 1177
BsuRI	GGCC	1 cut(s)	1215
BtgI	CCRYGG	2 cut(s)	59, 622
BtsCI	GGATG	4 cut(s)	336, 764, 1031, 1152
Cac8I	GCNNGC	1 cut(s)	186
Cfr13I	GGNCC	1 cut(s)	1136
Cfr42I	CCGCGG	1 cut(s)	625
CseI	GACGC	2 cut(s)	82, 620
CspCI	CAANNNNNGTGG	2 cut(s)	1104, 1139
CviAII	CATG	3 cut(s)	60, 374, 1211
CviJI	RGCY	5 cut(s)	16, 141, 514, 1121, 1215
CviKI_1	RGCY	5 cut(s)	16, 141, 514, 1121, 1215
DdeI	CTNAG	4 cut(s)	750, 823, 862, 879
DpnI	GATC	7 cut(s)	292, 457, 588, 643, 693, 847, 1179
DpnII	GATC	7 cut(s)	290, 455, 586, 641, 691, 845, 1177
DraI	TTTAAA	2 cut(s)	199, 570
EaeI	YGGCCR	1 cut(s)	1213
Eam1104I	CTCTTC	6 cut(s)	281, 890, 929, 1003, 1049, 1197
EarI	CTCTTC	6 cut(s)	281, 890, 929, 1003, 1049, 1197
Eco130I	CCWWGG	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	1136
EcoNI	CCTNNNNNAGG	1 cut(s)	1143
EcoRII	CCWGG	1 cut(s)	687
EcoT14I	CCWWGG	1 cut(s)	59
ErhI	CCWWGG	1 cut(s)	59
Esp3I	CGTCTC	2 cut(s)	4, 482
FaeI	CATG	3 cut(s)	63, 377, 1214
FalI	AAGNNNNNCTT	2 cut(s)	628, 660
FaqI	GGGAC	1 cut(s)	562
FatI	CATG	3 cut(s)	59, 373, 1210
FblI	GTMKAC	2 cut(s)	211, 766
Fnu4HI	GCNGC	3 cut(s)	48, 259, 512
FokI	GGATG	4 cut(s)	323, 771, 1018, 1139
Fsp4HI	GCNGC	3 cut(s)	48, 259, 512
FspBI	CTAG	1 cut(s)	138
GluI	GCNGC	3 cut(s)	48, 259, 512
HaeIII	GGCC	1 cut(s)	1215
HapII	CCGG	3 cut(s)	470, 698, 781
HgaI	GACGC	2 cut(s)	82, 620
Hin1II	CATG	3 cut(s)	63, 377, 1214
HinfI	GANTC	5 cut(s)	131, 164, 618, 1062, 1102
HpaII	CCGG	3 cut(s)	470, 698, 781
HphI	GGTGA	3 cut(s)	638, 686, 1111
Hpy166II	GTNNAC	4 cut(s)	212, 767, 991, 1047
Hpy188I	TCNGA	8 cut(s)	231, 269, 315, 460, 753, 850, 1096, 1197
Hpy188III	TCNNGA	4 cut(s)	219, 446, 602, 1160
Hpy8I	GTNNAC	4 cut(s)	212, 767, 991, 1047
HpyAV	CCTTC	4 cut(s)	522, 883, 933, 1196
HpyCH4III	ACNGT	2 cut(s)	332, 795
HpyCH4IV	ACGT	1 cut(s)	462
HpyCH4V	TGCA	5 cut(s)	28, 188, 400, 790, 811
HpyF10VI	GCNNNNNNNGC	1 cut(s)	185
HpyF3I	CTNAG	4 cut(s)	750, 823, 862, 879
HpySE526I	ACGT	1 cut(s)	462
Hsp92II	CATG	3 cut(s)	63, 377, 1214
KspI	CCGCGG	1 cut(s)	625
Kzo9I	GATC	7 cut(s)	290, 455, 586, 641, 691, 845, 1177
LmnI	GCTCC	2 cut(s)	1031, 1197
LpnPI	CCDG	9 cut(s)	16, 198, 204, 459, 483, 674, 701, 711, 794
Lsp1109I	GCAGC	2 cut(s)	59, 523
LweI	GCATC	3 cut(s)	387, 749, 1040
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	462
MaeIII	GTNAC	3 cut(s)	70, 332, 1148
MalI	GATC	7 cut(s)	292, 457, 588, 643, 693, 847, 1179
MbiI	CCGCTC	1 cut(s)	1200
MboI	GATC	7 cut(s)	290, 455, 586, 641, 691, 845, 1177
MflI	RGATCY	4 cut(s)	290, 641, 845, 1177
MhlI	GDGCHC	1 cut(s)	885
MlsI	TGGCCA	1 cut(s)	1215
MluCI	AATT	4 cut(s)	120, 683, 901, 1012
MluNI	TGGCCA	1 cut(s)	1215
MlyI	GAGTC	1 cut(s)	125
Mox20I	TGGCCA	1 cut(s)	1215
MroXI	GAANNNNTTC	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	1215
MseI	TTAA	5 cut(s)	191, 198, 297, 327, 569
MslI	CAYNNNNRTG	2 cut(s)	395, 486
Msp20I	TGGCCA	1 cut(s)	1215
MspA1I	CMGCKG	1 cut(s)	624
MspI	CCGG	3 cut(s)	470, 698, 781
MspR9I	CCNGG	3 cut(s)	689, 698, 781
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	1 cut(s)	689
MvnI	CGCG	3 cut(s)	76, 614, 624
MwoI	GCNNNNNNNGC	1 cut(s)	185
NciI	CCSGG	2 cut(s)	698, 781
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	7 cut(s)	290, 455, 586, 641, 691, 845, 1177
NlaIII	CATG	3 cut(s)	63, 377, 1214
NlaIV	GGNNCC	2 cut(s)	734, 847
NmuCI	GTSAC	2 cut(s)	70, 1148
PctI	GAATGC	1 cut(s)	261
PdmI	GAANNNNTTC	1 cut(s)	495
PfeI	GAWTC	4 cut(s)	164, 618, 1062, 1102
PflMI	CCANNNNNTGG	1 cut(s)	65
PfoI	TCCNGGA	1 cut(s)	687
PkrI	GCNGC	3 cut(s)	49, 260, 513
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	687
PspN4I	GGNNCC	2 cut(s)	734, 847
PspPI	GGNCC	1 cut(s)	1136
PsuI	RGATCY	4 cut(s)	290, 641, 845, 1177
RseI	CAYNNNNRTG	2 cut(s)	395, 486
SacII	CCGCGG	1 cut(s)	625
SaqAI	TTAA	5 cut(s)	191, 198, 297, 327, 569
SatI	GCNGC	3 cut(s)	48, 259, 512
Sau3AI	GATC	7 cut(s)	290, 455, 586, 641, 691, 845, 1177
Sau96I	GGNCC	1 cut(s)	1136
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	3 cut(s)	689, 698, 781
SduI	GDGCHC	1 cut(s)	885
SfaNI	GCATC	3 cut(s)	387, 749, 1040
SfcI	CTRYAG	1 cut(s)	984
Sfr303I	CCGCGG	1 cut(s)	625
SgrBI	CCGCGG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	1136
SmiMI	CAYNNNNRTG	2 cut(s)	395, 486
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	4 cut(s)	120, 683, 901, 1012
SsiI	CCGC	5 cut(s)	259, 622, 624, 1029, 1200
SspI	AATATT	1 cut(s)	594
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	3 cut(s)	687, 696, 779
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	2 cut(s)	332, 795
TaiI	ACGT	1 cut(s)	465
TaqI	TCGA	6 cut(s)	129, 526, 654, 932, 970, 1016
TasI	AATT	4 cut(s)	120, 683, 901, 1012
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	4 cut(s)	164, 618, 1062, 1102
Tru1I	TTAA	5 cut(s)	191, 198, 297, 327, 569
Tru9I	TTAA	5 cut(s)	191, 198, 297, 327, 569
TseFI	GTSAC	2 cut(s)	70, 1148
TseI	GCWGC	2 cut(s)	47, 511
Tsp45I	GTSAC	2 cut(s)	70, 1148
TspDTI	ATGAA	4 cut(s)	362, 411, 908, 1067
TspGWI	ACGGA	1 cut(s)	1221
Van91I	CCANNNNNTGG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	1136
XagI	CCTNNNNNAGG	1 cut(s)	1143
XapI	RAATTY	2 cut(s)	683, 901
XmiI	GTMKAC	2 cut(s)	211, 766
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.