Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0021920

Physical Location & Seq

Genomic Coordinates Reverse (-)

2599057 .. 2599887

Gene Structure 831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCACAGAGGAACAGAGCGAACTTCATATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTCGTCTCCATTTTTGTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTGTGAATAATGGAATGGTAAGCATTACTCATTTAAAAGTGTCCCACGCTGATCTAATATTTTTTCAAGAAAATGACGCGAGAATCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATCAGTTGAAAAAATCATAGGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAACAAAAATAGAATGGTTCCACCTACTCAAAACTCAGAGGGGATGCCGTCTACTACTAAAATCCCGGTTTTTGCAACAGTTGGGTTCTTCTATGCAAGAAGAAGACTTAGAAAGAACAAAGAGGTTTGGATCCGAAAAAGTATGCTTAGGCAGTTCCTTCGCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTCAAATCCCTATTCTTATCGAAGAGAAGGAACGAGAAAAACCGAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTTACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGAAGAATCAAAAGGATTGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTATCTTATGGACCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCTAAACCTTCCTCTTCGGAGCGGAAACGGACATGGCCAAAACATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006417 GO:0006450 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0019843 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0034248 GO:0034250 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045903 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:1901363 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Protein Analysis

276

Amino Acids

32.48

Weight (kDa)

10.42

Isoelectric Point (pI)

63.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S4	PF01479	26 - 66	7.4e-07	S4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0021920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G07734 ATMG00290
rosa_chinensis	RchiOBHm_MTg0499001
rosa_samantha	Rh1BG018500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	804
AccI	GTMKAC	1 cut(s)	370
AccII	CGCG	2 cut(s)	218, 228
AciI	CCGC	4 cut(s)	226, 228, 633, 804
AclWI	GGATC	3 cut(s)	303, 444, 457
AcoI	YGGCCR	1 cut(s)	817
AcsI	RAATTY	2 cut(s)	287, 505
AfiI	CCNNNNNNNGG	1 cut(s)	749
AgsI	TTSAA	5 cut(s)	206, 272, 520, 680, 778
AjnI	CCWGG	1 cut(s)	291
AloI	GAACNNNNNNTCC	2 cut(s)	568, 600
AluBI	AGCT	1 cut(s)	725
AluI	AGCT	1 cut(s)	725
Alw21I	GWGCWC	1 cut(s)	489
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	3 cut(s)	303, 444, 457
AoxI	GGCC	1 cut(s)	817
ApeKI	GCWGC	1 cut(s)	115
ApoI	RAATTY	2 cut(s)	287, 505
ArsI	GACNNNNNNTTYG	2 cut(s)	568, 600
Asp700I	GAANNNNTTC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	740
AsuC2I	CCSGG	2 cut(s)	302, 385
AsuHPI	GGTGA	3 cut(s)	242, 290, 715
AvaII	GGWCC	1 cut(s)	740
BalI	TGGCCA	1 cut(s)	819
BamHI	GGATCC	1 cut(s)	449
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	489
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	1 cut(s)	651
BceAI	ACGGC	1 cut(s)	351
BcgI	CGANNNNNNTGC	2 cut(s)	460, 494
BciT130I	CCWGG	1 cut(s)	293
BcnI	CCSGG	2 cut(s)	302, 385
BcoDI	GTCTC	1 cut(s)	86
BfmI	CTRYAG	1 cut(s)	588
BglII	AGATCT	2 cut(s)	245, 781
BisI	GCNGC	1 cut(s)	116
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	1 cut(s)	117
Bme1390I	CCNGG	3 cut(s)	293, 302, 385
Bme18I	GGWCC	1 cut(s)	740
BmgT120I	GGNCC	1 cut(s)	740
BmiI	GGNNCC	2 cut(s)	338, 451
BmrFI	CCNGG	3 cut(s)	293, 302, 385
BmsI	GCATC	2 cut(s)	353, 644
BpiI	GAAGAC	1 cut(s)	429
Bpu10I	CCTNAGC	1 cut(s)	466
Bpu1102I	GCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	1 cut(s)	90
BpuMI	CCSGG	2 cut(s)	302, 385
BsaJI	CCNNGG	1 cut(s)	226
BsaWI	WCCGGW	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	749
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	3 cut(s)	368, 635, 756
BseLI	CCNNNNNNNGG	1 cut(s)	749
BseMII	CTCAG	2 cut(s)	368, 474
BseXI	GCAGC	1 cut(s)	127
Bsh1236I	CGCG	2 cut(s)	218, 228
BshFI	GGCC	1 cut(s)	819
BsiHKAI	GWGCWC	1 cut(s)	489
BsiSI	CCGG	3 cut(s)	74, 302, 385
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	749
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	819
Bsp1286I	GDGCHC	1 cut(s)	489
Bsp143I	GATC	6 cut(s)	59, 190, 245, 295, 449, 781
Bsp1720I	GCTNAGC	1 cut(s)	483
BspACI	CCGC	4 cut(s)	226, 228, 633, 804
BspANI	GGCC	1 cut(s)	819
BspCNI	CTCAG	2 cut(s)	367, 475
BspFNI	CGCG	2 cut(s)	218, 228
BspLI	GGNNCC	2 cut(s)	338, 451
BspPI	GGATC	3 cut(s)	303, 444, 457
BsrBI	CCGCTC	1 cut(s)	804
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	6 cut(s)	59, 190, 245, 295, 449, 781
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	5 cut(s)	494, 533, 607, 653, 801
BstDEI	CTNAG	4 cut(s)	354, 427, 466, 483
BstDSI	CCRYGG	1 cut(s)	226
BstENI	CCTNNNNNAGG	1 cut(s)	747
BstF5I	GGATG	3 cut(s)	368, 635, 756
BstFNI	CGCG	2 cut(s)	218, 228
BstKTI	GATC	6 cut(s)	62, 193, 248, 298, 452, 784
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	6 cut(s)	59, 190, 245, 295, 449, 781
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	291, 300, 383
BstSFI	CTRYAG	1 cut(s)	588
BstUI	CGCG	2 cut(s)	218, 228
BstV1I	GCAGC	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	3 cut(s)	245, 449, 781
BstYI	RGATCY	3 cut(s)	245, 449, 781
BsuRI	GGCC	1 cut(s)	819
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	3 cut(s)	368, 635, 756
Cfr13I	GGNCC	1 cut(s)	740
Cfr42I	CCGCGG	1 cut(s)	229
CseI	GACGC	1 cut(s)	224
CspCI	CAANNNNNGTGG	2 cut(s)	708, 743
CviAII	CATG	1 cut(s)	815
CviJI	RGCY	3 cut(s)	118, 725, 819
CviKI_1	RGCY	3 cut(s)	118, 725, 819
DdeI	CTNAG	4 cut(s)	354, 427, 466, 483
DpnI	GATC	6 cut(s)	61, 192, 247, 297, 451, 783
DpnII	GATC	6 cut(s)	59, 190, 245, 295, 449, 781
DraI	TTTAAA	1 cut(s)	174
EaeI	YGGCCR	1 cut(s)	817
Eam1104I	CTCTTC	5 cut(s)	494, 533, 607, 653, 801
EarI	CTCTTC	5 cut(s)	494, 533, 607, 653, 801
Eco47I	GGWCC	1 cut(s)	740
EcoNI	CCTNNNNNAGG	1 cut(s)	747
EcoRII	CCWGG	1 cut(s)	291
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	1 cut(s)	818
FalI	AAGNNNNNCTT	2 cut(s)	232, 264
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	1 cut(s)	814
FblI	GTMKAC	1 cut(s)	370
Fnu4HI	GCNGC	1 cut(s)	116
FokI	GGATG	3 cut(s)	375, 622, 743
Fsp4HI	GCNGC	1 cut(s)	116
GluI	GCNGC	1 cut(s)	116
HaeIII	GGCC	1 cut(s)	819
HapII	CCGG	3 cut(s)	74, 302, 385
HgaI	GACGC	1 cut(s)	224
Hin1II	CATG	1 cut(s)	818
HinfI	GANTC	3 cut(s)	222, 666, 706
HpaII	CCGG	3 cut(s)	74, 302, 385
HphI	GGTGA	3 cut(s)	242, 290, 715
Hpy166II	GTNNAC	3 cut(s)	371, 595, 651
Hpy188I	TCNGA	5 cut(s)	64, 357, 454, 700, 801
Hpy188III	TCNNGA	3 cut(s)	50, 206, 764
Hpy8I	GTNNAC	3 cut(s)	371, 595, 651
HpyAV	CCTTC	4 cut(s)	126, 487, 537, 800
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	4, 394, 415
HpyF3I	CTNAG	4 cut(s)	354, 427, 466, 483
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	818
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	6 cut(s)	59, 190, 245, 295, 449, 781
LmnI	GCTCC	2 cut(s)	635, 801
LpnPI	CCDG	6 cut(s)	63, 87, 278, 305, 315, 398
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	353, 644
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	752
MalI	GATC	6 cut(s)	61, 192, 247, 297, 451, 783
MbiI	CCGCTC	1 cut(s)	804
MboI	GATC	6 cut(s)	59, 190, 245, 295, 449, 781
MflI	RGATCY	3 cut(s)	245, 449, 781
MhlI	GDGCHC	1 cut(s)	489
MlsI	TGGCCA	1 cut(s)	819
MluCI	AATT	3 cut(s)	287, 505, 616
MluNI	TGGCCA	1 cut(s)	819
MnlI	CCTC	7 cut(s)	114, 351, 435, 495, 694, 771, 804
Mox20I	TGGCCA	1 cut(s)	819
MroXI	GAANNNNTTC	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	819
MseI	TTAA	1 cut(s)	173
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	819
MspA1I	CMGCKG	1 cut(s)	228
MspI	CCGG	3 cut(s)	74, 302, 385
MspR9I	CCNGG	3 cut(s)	293, 302, 385
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	2 cut(s)	218, 228
NciI	CCSGG	2 cut(s)	302, 385
NdeII	GATC	6 cut(s)	59, 190, 245, 295, 449, 781
NlaIII	CATG	1 cut(s)	818
NlaIV	GGNNCC	2 cut(s)	338, 451
NmuCI	GTSAC	1 cut(s)	752
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	222, 666, 706
PfoI	TCCNGGA	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	338, 451
PspPI	GGNCC	1 cut(s)	740
PsuI	RGATCY	3 cut(s)	245, 449, 781
RseI	CAYNNNNRTG	1 cut(s)	90
SacII	CCGCGG	1 cut(s)	229
SaqAI	TTAA	1 cut(s)	173
SatI	GCNGC	1 cut(s)	116
Sau3AI	GATC	6 cut(s)	59, 190, 245, 295, 449, 781
Sau96I	GGNCC	1 cut(s)	740
ScrFI	CCNGG	3 cut(s)	293, 302, 385
SduI	GDGCHC	1 cut(s)	489
SfaNI	GCATC	2 cut(s)	353, 644
SfcI	CTRYAG	1 cut(s)	588
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	105
SmoI	CTYRAG	1 cut(s)	105
Sse9I	AATT	3 cut(s)	287, 505, 616
SsiI	CCGC	4 cut(s)	226, 228, 633, 804
SspI	AATATT	1 cut(s)	198
StyD4I	CCNGG	3 cut(s)	291, 300, 383
TaaI	ACNGT	1 cut(s)	399
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	5 cut(s)	130, 258, 536, 574, 620
TasI	AATT	3 cut(s)	287, 505, 616
TfiI	GAWTC	3 cut(s)	222, 666, 706
Tru1I	TTAA	1 cut(s)	173
Tru9I	TTAA	1 cut(s)	173
TseFI	GTSAC	1 cut(s)	752
TseI	GCWGC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	752
TspDTI	ATGAA	3 cut(s)	15, 512, 671
TspGWI	ACGGA	1 cut(s)	825
VpaK11BI	GGWCC	1 cut(s)	740
XagI	CCTNNNNNAGG	1 cut(s)	747
XapI	RAATTY	2 cut(s)	287, 505
XmiI	GTMKAC	1 cut(s)	370
XmnI	GAANNNNTTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.