ATMG01120

Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
Mt
OG0021922
Physical Location & Seq
Reverse (-)
287917 .. 289083
1167 bp
Loading structure...
UTR
Exon/CDS
Intron
ATMG01120.1

Sequence Viewer

Length: 273 bp
TCGAAATATGCCTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTCTCTTATGAAGTATCTATTGGTCTTATTCTTATTACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTCTGGTATTCCCCTGTTCCCTGTATTGGTTATGTTCCTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCCGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAGAATAT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006091 GO:0008150 GO:0008152 GO:0009987 GO:0015980 GO:0044237 GO:0045333 GO:0055114
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012
Pfam Domains
Protein Families
NADHdh

Protein Analysis

91

Amino Acids

9.97

Weight (kDa)

4.9

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NADHdh PF00146 1 - 91 1.6e-32 NADH dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021922)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01120
rosa_chinensis RchiOBHm_MTg0499241
rosa_laevigata RLG00000000448 RLG00000000456

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 236
AfaI GTAC 1 cut(s) 87
AfiI CCNNNNNNNGG 2 cut(s) 172, 235
AjuI GAANNNNNNNTTGG 2 cut(s) 48, 80
AluBI AGCT 3 cut(s) 38, 215, 242
AluI AGCT 3 cut(s) 38, 215, 242
Alw21I GWGCWC 1 cut(s) 217
Alw26I GTCTC 1 cut(s) 52
ApeKI GCWGC 1 cut(s) 35
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 101
AvaII GGWCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 217
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 2 cut(s) 17, 197
BfmI CTRYAG 1 cut(s) 33
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
Bme18I GGWCC 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 103
BsaI GGTCTC 1 cut(s) 52
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 235
BseLI CCNNNNNNNGG 2 cut(s) 172, 235
BseXI GCAGC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 217
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 2 cut(s) 172, 235
BsmAI GTCTC 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 2 cut(s) 29, 223
BspACI CCGC 1 cut(s) 236
BspLI GGNNCC 1 cut(s) 103
BspMAI CTGCAG 1 cut(s) 37
BspTNI GGTCTC 1 cut(s) 52
BssMI GATC 2 cut(s) 29, 223
Bst4CI ACNGT 1 cut(s) 85
BstC8I GCNNGC 1 cut(s) 256
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 2 cut(s) 32, 226
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 2 cut(s) 29, 223
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 256
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 86
CviAII CATG 1 cut(s) 127
CviJI RGCY 4 cut(s) 38, 215, 242, 258
CviKI_1 RGCY 4 cut(s) 38, 215, 242, 258
CviQI GTAC 1 cut(s) 86
DpnI GATC 2 cut(s) 31, 225
DpnII GATC 2 cut(s) 29, 223
Ecl136II GAGCTC 1 cut(s) 215
Eco24I GRGCYC 1 cut(s) 217
Eco31I GGTCTC 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 101
Eco53kI GAGCTC 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 217
FaeI CATG 1 cut(s) 130
FaiI YATR 7 cut(s) 9, 54, 94, 128, 145, 179, 261
FaqI GGGAC 1 cut(s) 87
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 36
FriOI GRGCYC 1 cut(s) 217
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 2 cut(s) 17, 197
GlaI GCGC 1 cut(s) 132
GluI GCNGC 1 cut(s) 36
HhaI GCGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 130
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
HinfI GANTC 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4V TGCA 2 cut(s) 35, 254
Hsp92II CATG 1 cut(s) 130
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 2 cut(s) 29, 223
LmnI GCTCC 2 cut(s) 20, 220
LpnPI CCDG 5 cut(s) 135, 173, 180, 240, 243
Lsp1109I GCAGC 1 cut(s) 47
MaeI CTAG 2 cut(s) 17, 197
MalI GATC 2 cut(s) 31, 225
MboI GATC 2 cut(s) 29, 223
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 1 cut(s) 109
NdeII GATC 2 cut(s) 29, 223
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 103
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 1 cut(s) 37
PpuMI RGGWCCY 1 cut(s) 101
Psp124BI GAGCTC 1 cut(s) 217
Psp5II RGGWCCY 1 cut(s) 101
PspN4I GGNNCC 1 cut(s) 103
PspPI GGNCC 1 cut(s) 101
PspPPI RGGWCCY 1 cut(s) 101
PstI CTGCAG 1 cut(s) 37
RsaI GTAC 1 cut(s) 87
RsaNI GTAC 1 cut(s) 86
SacI GAGCTC 1 cut(s) 217
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 2 cut(s) 29, 223
Sau96I GGNCC 1 cut(s) 101
SduI GDGCHC 1 cut(s) 217
SetI ASST 4 cut(s) 40, 103, 217, 244
SfcI CTRYAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 101
Sse9I AATT 1 cut(s) 109
SsiI CCGC 1 cut(s) 236
SspMI CTAG 2 cut(s) 17, 197
SstI GAGCTC 1 cut(s) 217
TaaI ACNGT 1 cut(s) 85
TaqI TCGA 3 cut(s) 2, 113, 211
TasI AATT 1 cut(s) 109
TatI WGTACW 1 cut(s) 85
TfiI GAWTC 1 cut(s) 245
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 1 cut(s) 69
TspGWI ACGGA 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 101
XspI CTAG 2 cut(s) 17, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.