RCHIOBHM_MTG0499241

NADH-ubiquinone oxidoreductase chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
OG0021922
Physical Location & Seq
Reverse (-)
300681 .. 300932
252 bp
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UTR
Exon/CDS
Intron
PRQ15665

Sequence Viewer

Length: 252 bp
ATGGCGCAAAAGCAGATATGGTCCGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTCATTTCTCGTCTAGCAGAAACTAATCGAGCTCCGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGGACTCATTCTGACTGAAACAAGGGGTGGGTCTTTACCAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012
Pfam Domains
Protein Families
NADHdh

Protein Analysis

83

Amino Acids

8.99

Weight (kDa)

4.69

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NADHdh PF00146 2 - 50 1.7e-14 NADH dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021922)

Species Orthologous Gene IDs
arabidopsis_thaliana ATMG01120
rosa_chinensis RchiOBHm_MTg0499241
rosa_laevigata RLG00000000448 RLG00000000456

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 151
AciI CCGC 3 cut(s) 110, 151, 182
AclWI GGATC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 46, 109
AluBI AGCT 2 cut(s) 89, 116
AluI AGCT 2 cut(s) 89, 116
Alw21I GWGCWC 1 cut(s) 91
AlwI GGATC 1 cut(s) 154
Ama87I CYCGRG 2 cut(s) 196, 204
AspLEI GCGC 2 cut(s) 7, 151
AspS9I GGNCC 2 cut(s) 21, 201
AsuC2I CCSGG 4 cut(s) 197, 198, 205, 206
AvaI CYCGRG 2 cut(s) 196, 204
AvaII GGWCC 2 cut(s) 21, 201
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 91
BcnI CCSGG 4 cut(s) 197, 198, 205, 206
BfaI CTAG 1 cut(s) 71
Bme1390I CCNGG 4 cut(s) 197, 198, 205, 206
Bme18I GGWCC 2 cut(s) 21, 201
BmeT110I CYCGRG 2 cut(s) 196, 204
BmgT120I GGNCC 2 cut(s) 21, 201
BmiI GGNNCC 2 cut(s) 202, 203
BmrFI CCNGG 4 cut(s) 197, 198, 205, 206
BmsI GCATC 1 cut(s) 145
BpuMI CCSGG 4 cut(s) 197, 198, 205, 206
BsaJI CCNNGG 4 cut(s) 196, 197, 204, 205
BsaWI WCCGGW 1 cut(s) 23
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 109
BseDI CCNNGG 4 cut(s) 196, 197, 204, 205
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 2 cut(s) 46, 109
Bsh1236I CGCG 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 91
BsiHKCI CYCGRG 2 cut(s) 196, 204
BsiSI CCGG 3 cut(s) 24, 197, 205
BslFI GGGAC 3 cut(s) 179, 187, 222
BslI CCNNNNNNNGG 2 cut(s) 46, 109
BsmFI GGGAC 3 cut(s) 179, 187, 222
BsoBI CYCGRG 2 cut(s) 196, 204
Bsp1286I GDGCHC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 97, 159
BspACI CCGC 3 cut(s) 110, 151, 182
BspFNI CGCG 1 cut(s) 151
BspLI GGNNCC 2 cut(s) 202, 203
BspPI GGATC 1 cut(s) 154
BssECI CCNNGG 4 cut(s) 196, 197, 204, 205
BssMI GATC 2 cut(s) 97, 159
Bst4CI ACNGT 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 130
BstF5I GGATG 1 cut(s) 160
BstFNI CGCG 1 cut(s) 151
BstHHI GCGC 2 cut(s) 7, 151
BstKTI GATC 2 cut(s) 100, 162
BstMBI GATC 2 cut(s) 97, 159
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstSCI CCNGG 4 cut(s) 195, 196, 203, 204
BstUI CGCG 1 cut(s) 151
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 2 cut(s) 7, 151
Cfr13I GGNCC 2 cut(s) 21, 201
Cfr9I CCCGGG 2 cut(s) 196, 204
CviJI RGCY 4 cut(s) 89, 116, 132, 188
CviKI_1 RGCY 4 cut(s) 89, 116, 132, 188
DpnI GATC 2 cut(s) 99, 161
DpnII GATC 2 cut(s) 97, 159
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 89
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 21, 201
Eco53kI GAGCTC 1 cut(s) 89
Eco88I CYCGRG 2 cut(s) 196, 204
EcoICRI GAGCTC 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 201
EcoT38I GRGCYC 1 cut(s) 91
FaiI YATR 4 cut(s) 19, 53, 135, 147
FaqI GGGAC 3 cut(s) 179, 187, 222
FauI CCCGC 1 cut(s) 144
FokI GGATG 1 cut(s) 167
FriOI GRGCYC 1 cut(s) 91
FspBI CTAG 1 cut(s) 71
GlaI GCGC 2 cut(s) 6, 150
HapII CCGG 3 cut(s) 24, 197, 205
HhaI GCGC 2 cut(s) 7, 151
Hin6I GCGC 2 cut(s) 5, 149
HinP1I GCGC 2 cut(s) 5, 149
HinfI GANTC 2 cut(s) 119, 210
HpaII CCGG 3 cut(s) 24, 197, 205
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 219
Hpy8I GTNNAC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HspAI GCGC 2 cut(s) 5, 149
KflI GGGWCCC 1 cut(s) 201
Kzo9I GATC 2 cut(s) 97, 159
LmnI GCTCC 1 cut(s) 94
LpnPI CCDG 6 cut(s) 37, 54, 114, 117, 210, 218
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 71
MalI GATC 2 cut(s) 99, 161
MboI GATC 2 cut(s) 97, 159
MboII GAAGA 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 91
MlyI GAGTC 1 cut(s) 204
MseI TTAA 2 cut(s) 165, 250
MspI CCGG 3 cut(s) 24, 197, 205
MspR9I CCNGG 4 cut(s) 197, 198, 205, 206
MvnI CGCG 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 155
NciI CCSGG 4 cut(s) 197, 198, 205, 206
NdeII GATC 2 cut(s) 97, 159
NlaIV GGNNCC 2 cut(s) 202, 203
PfeI GAWTC 1 cut(s) 119
PleI GAGTC 1 cut(s) 204
PpsI GAGTC 1 cut(s) 204
PpuMI RGGWCCY 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 91
Psp5II RGGWCCY 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 202, 203
PspPI GGNCC 2 cut(s) 21, 201
PspPPI RGGWCCY 1 cut(s) 201
SacI GAGCTC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 165, 250
Sau3AI GATC 2 cut(s) 97, 159
Sau96I GGNCC 2 cut(s) 21, 201
SchI GAGTC 1 cut(s) 204
ScrFI CCNGG 4 cut(s) 197, 198, 205, 206
SduI GDGCHC 1 cut(s) 91
SetI ASST 2 cut(s) 91, 118
SfaNI GCATC 1 cut(s) 145
SinI GGWCC 2 cut(s) 21, 201
SmaI CCCGGG 2 cut(s) 198, 206
SsiI CCGC 3 cut(s) 110, 151, 182
SspMI CTAG 1 cut(s) 71
SstI GAGCTC 1 cut(s) 91
StyD4I CCNGG 4 cut(s) 195, 196, 203, 204
TaaI ACNGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 85
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 2 cut(s) 165, 250
Tru9I TTAA 2 cut(s) 165, 250
TscAI CASTG 1 cut(s) 180
TspDTI ATGAA 1 cut(s) 49
TspGWI ACGGA 1 cut(s) 81
TspMI CCCGGG 2 cut(s) 196, 204
TspRI CASTG 1 cut(s) 180
VpaK11BI GGWCC 2 cut(s) 21, 201
XmaI CCCGGG 2 cut(s) 196, 204
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.