FvH4_1g07881

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0022138
Physical Location & Seq
Reverse (-)
4173327 .. 4174470
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g07881.t1

Sequence Viewer

Length: 1068 bp
ATGGCCAAGACAAATGGAGAAGATGAAGCAGTACTACTACTACCTCAACTACCCAACGATATTATCCGCCGAATCCTTCCACTCATTCCCACTAAATCCGCCTTTCGCATTAGCTTGTTTTCCAACCAATTCGAAGGTGCATGGTGTTCAGGCCCTGAGATTGATCTTGACGAGGGCAACCCTGATGGAGGTATAAACTTCACCAACGTCTTGAAAAGGTATCTGAAATTCCGTACCGAGGGTAAAGACCTTCGTCCGGATCAGTCCTTGTTTAAGTTTAGGGTTCGCATGGCGATGGACGACCCTATTAGAGAAGATATTCTGGAGAAGTTGTTGATCTGTTTTGCGAAAGAGAGAAGCATCAAAGTGTTAGATCTCAGCTGCCTCACTATACCAGCTCGCCTCTCATCCTTACAAACCCTAATTAATATCAAATCCTTAACCAGTCTGAGTTTGGAGTCTGTTCGAATAAAGGGTGATGCTGCTCCTTATGTGCGACTTGCTAGTAGCAGTGACTTGCTTCTTCCATTCTTGAAGAGTATGTCCCTCAAATCTATGCAATTACCGCACAGCAACTTCTCGGACATGCTAGTTACAAGGTGCCCTTCCATTGAGAATTTGTCAGTGATTTCATGTTGTTTCGACTTAGAATATCAGCAAAATAAGTTTTCAATTCCACATAGTGCTACTCTCAAGTGTTTGGAGTTGAGAGACTGCAATTTTCGGTATATCAGTGTAGATTCATGTTGGAATCTTGAAACTTTTACATCGGTTTCAGAATCTCCAGTTGTTGAGGAATTGAGTTTGGGTGAATGCGATAAGTTGGAGAAGATCGAAATCCTTGAAAAGCACCTTGAATCCATTGATATTTCGTTTTTAGACAATAAAACACTAAGTTTGAAGATCAAAGTGGACACGCCAAATCTTACCAGTTTCACATTGGATTCTGAAGATATGAGGCACAAGTGTATTGATGGACAGGGTAGTTTCACACATTTCTTTGAATATTACTACATATTAGAGGAGTATAAGAGCAGGCGAATCGATCCTTCTAGTTTGTTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

356

Amino Acids

40.56

Weight (kDa)

5.36

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_At5g56370 PF24758 119 - 290 1.4e-07 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022138)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07881
rosa_chinensis RchiOBHm_Chr5g0009421
rosa_multiflora Rmu_sc0019489.1_g000001
rosa_samantha Rh5AG073400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 600
AccIII TCCGGA 1 cut(s) 256
AciI CCGC 3 cut(s) 67, 99, 566
AclWI GGATC 2 cut(s) 267, 1040
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 227, 616
AcuI CTGAAG 1 cut(s) 969
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 2 cut(s) 33, 235
AfiI CCNNNNNNNGG 3 cut(s) 188, 238, 256
AgsI TTSAA 8 cut(s) 214, 535, 672, 758, 845, 857, 901, 1004
AluBI AGCT 3 cut(s) 114, 381, 398
AluI AGCT 3 cut(s) 114, 381, 398
Alw26I GTCTC 1 cut(s) 705
AlwI GGATC 2 cut(s) 267, 1040
AlwNI CAGNNNCTG 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 256
AoxI GGCC 2 cut(s) 3, 151
ApeKI GCWGC 2 cut(s) 381, 482
ApoI RAATTY 2 cut(s) 227, 616
AseI ATTAAT 1 cut(s) 426
Asp700I GAANNNNTTC 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 152
AsuHPI GGTGA 3 cut(s) 193, 488, 821
AsuII TTCGAA 2 cut(s) 132, 466
BaeGI GKGCMC 1 cut(s) 605
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 600
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BbvI GCAGC 2 cut(s) 368, 469
BccI CCATC 3 cut(s) 179, 289, 968
BcgI CGANNNNNNTGC 2 cut(s) 1024, 1058
BcoDI GTCTC 1 cut(s) 705
BfaI CTAG 3 cut(s) 504, 590, 1053
BglII AGATCT 1 cut(s) 373
BisI GCNGC 2 cut(s) 382, 483
BlsI GCNGC 2 cut(s) 383, 484
BmcAI AGTACT 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 602
BmsI GCATC 2 cut(s) 369, 469
BoxI GACNNNNGTC 1 cut(s) 252
BpmI CTGGAG 2 cut(s) 344, 768
Bpu14I TTCGAA 2 cut(s) 132, 466
BpuEI CTTGAG 1 cut(s) 677
Bsa29I ATCGAT 1 cut(s) 1044
BsaBI GATNNNNATC 1 cut(s) 836
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 238, 256
Bse1I ACTGG 3 cut(s) 444, 785, 930
Bse8I GATNNNNATC 1 cut(s) 836
BseAI TCCGGA 1 cut(s) 256
BseCI ATCGAT 1 cut(s) 1044
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 1 cut(s) 407
BseJI GATNNNNATC 1 cut(s) 836
BseLI CCNNNNNNNGG 3 cut(s) 188, 238, 256
BseMII CTCAG 3 cut(s) 147, 391, 440
BseNI ACTGG 3 cut(s) 444, 785, 930
BseRI GAGGAG 1 cut(s) 1037
BseSI GKGCMC 1 cut(s) 605
BseXI GCAGC 2 cut(s) 368, 469
BshFI GGCC 2 cut(s) 5, 153
BshNI GGYRCC 1 cut(s) 600
BshVI ATCGAT 1 cut(s) 1044
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 3 cut(s) 188, 238, 256
BsmAI GTCTC 1 cut(s) 705
BsmFI GGGAC 1 cut(s) 529
BsmI GAATGC 1 cut(s) 818
BsnI GGCC 2 cut(s) 5, 153
Bsp119I TTCGAA 2 cut(s) 132, 466
Bsp1286I GDGCHC 1 cut(s) 605
Bsp13I TCCGGA 1 cut(s) 256
Bsp143I GATC 7 cut(s) 163, 259, 336, 373, 831, 903, 1045
BspACI CCGC 3 cut(s) 67, 99, 566
BspANI GGCC 2 cut(s) 5, 153
BspCNI CTCAG 3 cut(s) 148, 390, 441
BspDI ATCGAT 1 cut(s) 1044
BspEI TCCGGA 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 602
BspPI GGATC 2 cut(s) 267, 1040
BspT104I TTCGAA 2 cut(s) 132, 466
BspT107I GGYRCC 1 cut(s) 600
BsrI ACTGG 3 cut(s) 444, 785, 930
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 7 cut(s) 163, 259, 336, 373, 831, 903, 1045
Bst6I CTCTTC 1 cut(s) 530
BstBI TTCGAA 2 cut(s) 132, 466
BstC8I GCNNGC 2 cut(s) 400, 1037
BstDEI CTNAG 5 cut(s) 156, 377, 449, 646, 893
BstENI CCTNNNNNAGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 407
BstKTI GATC 7 cut(s) 166, 262, 339, 376, 834, 906, 1048
BstMAI GTCTC 1 cut(s) 705
BstMBI GATC 7 cut(s) 163, 259, 336, 373, 831, 903, 1045
BstMWI GCNNNNNNNGC 1 cut(s) 565
BstNSI RCATGY 1 cut(s) 589
BstPAI GACNNNNGTC 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 605
BstV1I GCAGC 2 cut(s) 368, 469
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
Bsu15I ATCGAT 1 cut(s) 1044
BsuRI GGCC 2 cut(s) 5, 153
BsuTUI ATCGAT 1 cut(s) 1044
BtgZI GCGATG 1 cut(s) 308
BtsCI GGATG 1 cut(s) 407
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 3 cut(s) 517, 630, 739
Cac8I GCNNGC 2 cut(s) 400, 1037
CaiI CAGNNNCTG 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 152
ClaI ATCGAT 1 cut(s) 1044
Csp6I GTAC 2 cut(s) 32, 234
CviAII CATG 5 cut(s) 141, 289, 586, 633, 744
CviJI RGCY 5 cut(s) 5, 114, 153, 381, 398
CviKI_1 RGCY 5 cut(s) 5, 114, 153, 381, 398
CviQI GTAC 2 cut(s) 32, 234
DdeI CTNAG 5 cut(s) 156, 377, 449, 646, 893
DpnI GATC 7 cut(s) 165, 261, 338, 375, 833, 905, 1047
DpnII GATC 7 cut(s) 163, 259, 336, 373, 831, 903, 1045
DraIII CACNNNGTG 1 cut(s) 683
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 530
EarI CTCTTC 1 cut(s) 530
EciI GGCGGA 2 cut(s) 56, 88
Eco57I CTGAAG 1 cut(s) 969
EcoNI CCTNNNNNAGG 1 cut(s) 186
EcoO109I RGGNCCY 1 cut(s) 152
FaeI CATG 5 cut(s) 144, 292, 589, 636, 747
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FaqI GGGAC 1 cut(s) 529
FatI CATG 5 cut(s) 140, 288, 585, 632, 743
Fnu4HI GCNGC 2 cut(s) 382, 483
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 2 cut(s) 382, 483
FspBI CTAG 3 cut(s) 504, 590, 1053
GluI GCNGC 2 cut(s) 382, 483
GsuI CTGGAG 2 cut(s) 344, 768
HaeIII GGCC 2 cut(s) 5, 153
HapII CCGG 1 cut(s) 257
Hin1II CATG 5 cut(s) 144, 292, 589, 636, 747
HinfI GANTC 8 cut(s) 72, 458, 740, 751, 779, 857, 944, 1041
HpaII CCGG 1 cut(s) 257
HphI GGTGA 3 cut(s) 193, 488, 821
Hpy166II GTNNAC 1 cut(s) 913
Hpy188I TCNGA 5 cut(s) 225, 450, 583, 778, 949
Hpy188III TCNNGA 6 cut(s) 167, 211, 257, 323, 532, 755
Hpy8I GTNNAC 1 cut(s) 913
HpyAV CCTTC 5 cut(s) 86, 128, 260, 615, 1059
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 140, 559, 717
HpyF10VI GCNNNNNNNGC 1 cut(s) 565
HpyF3I CTNAG 5 cut(s) 156, 377, 449, 646, 893
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 5 cut(s) 144, 292, 589, 636, 747
Kpn2I TCCGGA 1 cut(s) 256
Kzo9I GATC 7 cut(s) 163, 259, 336, 373, 831, 903, 1045
LmnI GCTCC 1 cut(s) 490
Lsp1109I GCAGC 2 cut(s) 368, 469
LweI GCATC 2 cut(s) 369, 469
MaeI CTAG 3 cut(s) 504, 590, 1053
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 2 cut(s) 512, 592
MalI GATC 7 cut(s) 165, 261, 338, 375, 833, 905, 1047
MboI GATC 7 cut(s) 163, 259, 336, 373, 831, 903, 1045
MboII GAAGA 7 cut(s) 32, 326, 515, 547, 841, 913, 962
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 605
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 8 cut(s) 128, 227, 423, 560, 616, 672, 718, 797
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 3 cut(s) 147, 728, 804
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 256
MroXI GAANNNNTTC 1 cut(s) 318
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 273, 426, 440
MslI CAYNNNNRTG 2 cut(s) 293, 365
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 381
MspI CCGG 1 cut(s) 257
Mva1269I GAATGC 1 cut(s) 818
MwoI GCNNNNNNNGC 1 cut(s) 565
NdeII GATC 7 cut(s) 163, 259, 336, 373, 831, 903, 1045
NlaIII CATG 5 cut(s) 144, 292, 589, 636, 747
NlaIV GGNNCC 1 cut(s) 602
NmuCI GTSAC 1 cut(s) 512
NspI RCATGY 1 cut(s) 589
NspV TTCGAA 2 cut(s) 132, 466
PctI GAATGC 1 cut(s) 818
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 7 cut(s) 72, 740, 751, 779, 857, 944, 1041
PkrI GCNGC 2 cut(s) 383, 484
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PshAI GACNNNNGTC 1 cut(s) 252
PshBI ATTAAT 1 cut(s) 426
PspN4I GGNNCC 1 cut(s) 602
PspPI GGNCC 1 cut(s) 152
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 373
PvuII CAGCTG 1 cut(s) 381
RsaI GTAC 2 cut(s) 33, 235
RsaNI GTAC 2 cut(s) 32, 234
RseI CAYNNNNRTG 2 cut(s) 293, 365
SaqAI TTAA 3 cut(s) 273, 426, 440
SatI GCNGC 2 cut(s) 382, 483
Sau3AI GATC 7 cut(s) 163, 259, 336, 373, 831, 903, 1045
Sau96I GGNCC 1 cut(s) 152
ScaI AGTACT 1 cut(s) 33
SchI GAGTC 1 cut(s) 467
SduI GDGCHC 1 cut(s) 605
SfaNI GCATC 2 cut(s) 369, 469
SfuI TTCGAA 2 cut(s) 132, 466
SmiMI CAYNNNNRTG 2 cut(s) 293, 365
SmlI CTYRAG 1 cut(s) 692
SmoI CTYRAG 1 cut(s) 692
Sse9I AATT 8 cut(s) 128, 227, 423, 560, 616, 672, 718, 797
SsiI CCGC 3 cut(s) 67, 99, 566
SspI AATATT 1 cut(s) 1007
SspMI CTAG 3 cut(s) 504, 590, 1053
TaiI ACGT 1 cut(s) 210
TaqI TCGA 5 cut(s) 132, 466, 642, 834, 1044
TasI AATT 8 cut(s) 128, 227, 423, 560, 616, 672, 718, 797
TatI WGTACW 1 cut(s) 31
TfiI GAWTC 7 cut(s) 72, 740, 751, 779, 857, 944, 1041
Tru1I TTAA 3 cut(s) 273, 426, 440
Tru9I TTAA 3 cut(s) 273, 426, 440
TscAI CASTG 3 cut(s) 517, 630, 739
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 2 cut(s) 381, 482
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 3 cut(s) 39, 621, 732
TspGWI ACGGA 1 cut(s) 221
TspRI CASTG 3 cut(s) 517, 630, 739
VspI ATTAAT 1 cut(s) 426
XagI CCTNNNNNAGG 1 cut(s) 186
XapI RAATTY 2 cut(s) 227, 616
XceI RCATGY 1 cut(s) 589
XcmI CCANNNNNNNNNTGG 2 cut(s) 451, 937
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 3 cut(s) 504, 590, 1053
ZrmI AGTACT 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.