Rmu_sc0019489.1_g000001

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019489.1
OG0022138
Physical Location & Seq
Forward (+)
1910 .. 2953
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019489.1_g000001.1.cds

Sequence Viewer

Length: 1044 bp
atgatgatcgatgattgtgatgctcaaaattccatggccgttgtaatgagaatacgacctcacttaccggacgacattatccgccaaattctctcacacctgccgactaaatccgccatccgcatgagcattctttctaagcaatttgaaggagcatggtgttccctccctgtaatagatctcgacgagggaaagccacaggccaaccttgatcgaggtatacacttcaccaacatcttgaaaaggtatttgaaattccgtactgagaacaaagaccgtctgcatccccccttggataaatttaggcttcggatggcggtgatgtacccggatagagaagatattctagaaaagttgttgaccagttttgcacaagagagaagtgtcaaagagttagatctcagctgtcccacattcacaaatattgcactagaaaagcggccgcagtcatccccccaaatactcgttaatatcaactctttaactagtttgagtttggagtctgtgggaatagagaatgatgttactcgtagtggtgatatacttcttccatctttgaagaccatgtccctcaaatctatgcacctgcagtctagctttaagtttttgtcccatctaatttcaaggtgccctgccattgagtatttgacattgacttcatgtaccgaattcttttggttcggtcgatcagggtcgattgcaattgcacggtctcgtactctcaagcatttggagattagagattgcagtttttcaatattccatgtatctgactgtgaggttcttgaatgtgttacattggtttcaaaatctccaagagtcatgttagctttgtacggaggcaggaacttgaaatatatcaacatctgctcagagaaggcgacagatattcatattggccgttgcaaagactttgtggaggccacaatggatactccaaatcttcaactgtttagattcaatggtttcgatgctatgaaatgcatgaatggaaggcatttattgagtaatttcgtaataagcacagagatgctggcgagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

347

Amino Acids

39.51

Weight (kDa)

8.45

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022138)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07881
rosa_chinensis RchiOBHm_Chr5g0009421
rosa_multiflora Rmu_sc0019489.1_g000001
rosa_samantha Rh5AG073400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 108, 594
Acc36I ACCTGC 2 cut(s) 108, 594
AccB1I GGYRCC 1 cut(s) 627
AccI GTMKAC 1 cut(s) 220
AciI CCGC 6 cut(s) 82, 114, 121, 317, 439, 443
AcoI YGGCCR 3 cut(s) 36, 440, 898
AcsI RAATTY 5 cut(s) 28, 87, 254, 299, 668
AfaI GTAC 5 cut(s) 262, 326, 664, 718, 836
AhlI ACTAGT 1 cut(s) 485
AluBI AGCT 4 cut(s) 405, 597, 830, 1041
AluI AGCT 4 cut(s) 405, 597, 830, 1041
Alw26I GTCTC 1 cut(s) 717
AoxI GGCC 5 cut(s) 36, 201, 440, 898, 921
ApoI RAATTY 5 cut(s) 28, 87, 254, 299, 668
Asp700I GAANNNNTTC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 3 cut(s) 220, 331, 548
BaeGI GKGCMC 1 cut(s) 632
BanI GGYRCC 1 cut(s) 627
BbsI GAAGAC 1 cut(s) 566
BccI CCATC 4 cut(s) 125, 307, 559, 621
BceAI ACGGC 2 cut(s) 23, 885
BciVI GTATCC 1 cut(s) 925
BcnI CCSGG 1 cut(s) 329
BcoDI GTCTC 1 cut(s) 717
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 5 cut(s) 347, 431, 486, 594, 1042
BfmI CTRYAG 1 cut(s) 587
BfuAI ACCTGC 2 cut(s) 108, 594
BfuI GTATCC 1 cut(s) 925
BglII AGATCT 2 cut(s) 178, 397
BisI GCNGC 2 cut(s) 440, 443
BlsI GCNGC 2 cut(s) 441, 444
Bme1390I CCNGG 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 629
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 4 cut(s) 10, 292, 961, 1020
BpiI GAAGAC 1 cut(s) 566
BpuEI CTTGAG 1 cut(s) 707
BpuMI CCSGG 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 717
BsaJI CCNNGG 2 cut(s) 33, 291
BsaWI WCCGGW 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 33, 291
BseGI GGATG 4 cut(s) 117, 283, 318, 449
BseMII CTCAG 3 cut(s) 255, 415, 885
BseNI ACTGG 1 cut(s) 363
BseSI GKGCMC 1 cut(s) 632
BseX3I CGGCCG 1 cut(s) 440
Bsh1285I CGRYCG 2 cut(s) 443, 685
BshFI GGCC 5 cut(s) 38, 203, 442, 900, 923
BshNI GGYRCC 1 cut(s) 627
BshVI ATCGAT 1 cut(s) 9
BsiEI CGRYCG 2 cut(s) 443, 685
BsiSI CCGG 2 cut(s) 68, 329
BslFI GGGAC 3 cut(s) 393, 553, 595
BsmAI GTCTC 1 cut(s) 717
BsmFI GGGAC 3 cut(s) 393, 553, 595
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 5 cut(s) 38, 203, 442, 900, 923
Bso31I GGTCTC 1 cut(s) 717
Bsp1286I GDGCHC 1 cut(s) 632
Bsp143I GATC 5 cut(s) 6, 178, 211, 397, 686
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 6 cut(s) 82, 114, 121, 317, 439, 443
BspANI GGCC 5 cut(s) 38, 203, 442, 900, 923
BspCNI CTCAG 3 cut(s) 256, 414, 884
BspDI ATCGAT 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 629
BspMAI CTGCAG 1 cut(s) 591
BspMI ACCTGC 2 cut(s) 108, 594
BspT107I GGYRCC 1 cut(s) 627
BspTNI GGTCTC 1 cut(s) 717
BsrI ACTGG 1 cut(s) 363
BssECI CCNNGG 2 cut(s) 33, 291
BssMI GATC 5 cut(s) 6, 178, 211, 397, 686
BssNAI GTATAC 1 cut(s) 221
BssT1I CCWWGG 2 cut(s) 33, 291
Bst1107I GTATAC 1 cut(s) 221
Bst4CI ACNGT 4 cut(s) 278, 711, 776, 951
BstC8I GCNNGC 2 cut(s) 1035, 1039
BstDEI CTNAG 4 cut(s) 138, 264, 401, 871
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 4 cut(s) 117, 283, 318, 449
BstKTI GATC 5 cut(s) 9, 181, 214, 400, 689
BstMAI GTCTC 1 cut(s) 717
BstMBI GATC 5 cut(s) 6, 178, 211, 397, 686
BstMCI CGRYCG 2 cut(s) 443, 685
BstSCI CCNGG 1 cut(s) 327
BstSFI CTRYAG 1 cut(s) 587
BstSLI GKGCMC 1 cut(s) 632
BstV2I GAAGAC 1 cut(s) 566
BstX2I RGATCY 2 cut(s) 178, 397
BstYI RGATCY 2 cut(s) 178, 397
BstZ17I GTATAC 1 cut(s) 221
BstZI CGGCCG 1 cut(s) 440
Bsu15I ATCGAT 1 cut(s) 9
BsuI GTATCC 1 cut(s) 925
BsuRI GGCC 5 cut(s) 38, 203, 442, 900, 923
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 4 cut(s) 117, 283, 318, 449
BveI ACCTGC 2 cut(s) 108, 594
Cac8I GCNNGC 2 cut(s) 1035, 1039
CciNI GCGGCCGC 1 cut(s) 440
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 5 cut(s) 261, 325, 663, 717, 835
CviAII CATG 8 cut(s) 34, 124, 156, 565, 660, 764, 823, 985
CviQI GTAC 5 cut(s) 261, 325, 663, 717, 835
DdeI CTNAG 4 cut(s) 138, 264, 401, 871
DpnI GATC 5 cut(s) 8, 180, 213, 399, 688
DpnII GATC 5 cut(s) 6, 178, 211, 397, 686
EaeI YGGCCR 3 cut(s) 36, 440, 898
EagI CGGCCG 1 cut(s) 440
EciI GGCGGA 2 cut(s) 71, 103
EclXI CGGCCG 1 cut(s) 440
Eco130I CCWWGG 2 cut(s) 33, 291
Eco31I GGTCTC 1 cut(s) 717
Eco52I CGGCCG 1 cut(s) 440
EcoRI GAATTC 1 cut(s) 668
EcoT14I CCWWGG 2 cut(s) 33, 291
EcoT22I ATGCAT 1 cut(s) 986
ErhI CCWWGG 2 cut(s) 33, 291
FaeI CATG 8 cut(s) 37, 127, 159, 568, 663, 767, 826, 988
FaqI GGGAC 3 cut(s) 393, 553, 595
FatI CATG 8 cut(s) 33, 123, 155, 564, 659, 763, 822, 984
FblI GTMKAC 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 440, 443
FokI GGATG 4 cut(s) 104, 270, 325, 436
Fsp4HI GCNGC 2 cut(s) 440, 443
FspBI CTAG 5 cut(s) 347, 431, 486, 594, 1042
GluI GCNGC 2 cut(s) 440, 443
HaeIII GGCC 5 cut(s) 38, 203, 442, 900, 923
HapII CCGG 2 cut(s) 68, 329
Hin1II CATG 8 cut(s) 37, 127, 159, 568, 663, 767, 826, 988
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 3 cut(s) 500, 819, 957
HpaII CCGG 2 cut(s) 68, 329
HphI GGTGA 3 cut(s) 220, 331, 548
Hpy166II GTNNAC 2 cut(s) 221, 360
Hpy188I TCNGA 3 cut(s) 312, 772, 874
Hpy188III TCNNGA 4 cut(s) 182, 238, 347, 785
Hpy8I GTNNAC 2 cut(s) 221, 360
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 143, 871, 987
HpyCH4III ACNGT 4 cut(s) 278, 711, 776, 951
HpyF3I CTNAG 4 cut(s) 138, 264, 401, 871
Hsp92II CATG 8 cut(s) 37, 127, 159, 568, 663, 767, 826, 988
Kzo9I GATC 5 cut(s) 6, 178, 211, 397, 686
LmnI GCTCC 1 cut(s) 152
LweI GCATC 4 cut(s) 10, 292, 961, 1020
MaeI CTAG 5 cut(s) 347, 431, 486, 594, 1042
MaeIII GTNAC 2 cut(s) 523, 793
MalI GATC 5 cut(s) 8, 180, 213, 399, 688
MboI GATC 5 cut(s) 6, 178, 211, 397, 686
MboII GAAGA 4 cut(s) 350, 539, 571, 935
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 2 cut(s) 178, 397
MhlI GDGCHC 1 cut(s) 632
MluCI AATT 9 cut(s) 28, 87, 143, 254, 299, 618, 668, 702, 1009
MlyI GAGTC 2 cut(s) 509, 828
MnlI CCTC 8 cut(s) 69, 176, 181, 209, 581, 772, 833, 913
Mph1103I ATGCAT 1 cut(s) 986
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 3 cut(s) 468, 482, 600
MslI CAYNNNNRTG 2 cut(s) 122, 1028
MspA1I CMGCKG 1 cut(s) 405
MspI CCGG 2 cut(s) 68, 329
MspR9I CCNGG 1 cut(s) 329
MunI CAATTG 1 cut(s) 702
Mva1269I GAATGC 1 cut(s) 129
NciI CCSGG 1 cut(s) 329
NcoI CCATGG 1 cut(s) 33
NdeII GATC 5 cut(s) 6, 178, 211, 397, 686
NlaIII CATG 8 cut(s) 37, 127, 159, 568, 663, 767, 826, 988
NlaIV GGNNCC 1 cut(s) 629
NotI GCGGCCGC 1 cut(s) 440
NsiI ATGCAT 1 cut(s) 986
PaqCI CACCTGC 2 cut(s) 108, 594
PctI GAATGC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 342
PfeI GAWTC 1 cut(s) 957
PflFI GACNNNGTC 1 cut(s) 565
PkrI GCNGC 2 cut(s) 441, 444
PleI GAGTC 2 cut(s) 508, 827
PpsI GAGTC 2 cut(s) 508, 827
PspN4I GGNNCC 1 cut(s) 629
PstI CTGCAG 1 cut(s) 591
PsuI RGATCY 2 cut(s) 178, 397
PsyI GACNNNGTC 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 405
RsaI GTAC 5 cut(s) 262, 326, 664, 718, 836
RsaNI GTAC 5 cut(s) 261, 325, 663, 717, 835
RseI CAYNNNNRTG 2 cut(s) 122, 1028
SaqAI TTAA 3 cut(s) 468, 482, 600
SatI GCNGC 2 cut(s) 440, 443
Sau3AI GATC 5 cut(s) 6, 178, 211, 397, 686
SchI GAGTC 2 cut(s) 509, 828
ScrFI CCNGG 1 cut(s) 329
SduI GDGCHC 1 cut(s) 632
SfaNI GCATC 4 cut(s) 10, 292, 961, 1020
SfcI CTRYAG 1 cut(s) 587
SmiMI CAYNNNNRTG 2 cut(s) 122, 1028
SmlI CTYRAG 1 cut(s) 722
SmoI CTYRAG 1 cut(s) 722
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 9 cut(s) 28, 87, 143, 254, 299, 618, 668, 702, 1009
SsiI CCGC 6 cut(s) 82, 114, 121, 317, 439, 443
SspI AATATT 2 cut(s) 424, 759
SspMI CTAG 5 cut(s) 347, 431, 486, 594, 1042
StyD4I CCNGG 1 cut(s) 327
StyI CCWWGG 2 cut(s) 33, 291
TaaI ACNGT 4 cut(s) 278, 711, 776, 951
TaqI TCGA 6 cut(s) 9, 183, 214, 685, 695, 969
TaqII GACCGA 1 cut(s) 671
TasI AATT 9 cut(s) 28, 87, 143, 254, 299, 618, 668, 702, 1009
TauI GCSGC 2 cut(s) 442, 445
TfiI GAWTC 1 cut(s) 957
Tru1I TTAA 3 cut(s) 468, 482, 600
Tru9I TTAA 3 cut(s) 468, 482, 600
TspDTI ATGAA 4 cut(s) 648, 881, 992, 1001
TspGWI ACGGA 2 cut(s) 248, 852
Tth111I GACNNNGTC 1 cut(s) 565
XapI RAATTY 5 cut(s) 28, 87, 254, 299, 668
XbaI TCTAGA 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 220
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 5 cut(s) 347, 431, 486, 594, 1042
Zsp2I ATGCAT 1 cut(s) 986
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.