Rh5AG073400

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0022138
Physical Location & Seq
Reverse (-)
6267699 .. 6268537
839 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG073400.1

Sequence Viewer

Length: 645 bp
ATGATGATCGATGATTGTGATGCTCAAAATTCCATGGCCGTTGTAATGAGAATACGACCTCACTTACCGGACGACATTATCCGCCAAATTCTCTCACACCTGCCTACTAAATCCGCCATCCGCATGAGCATTCTTTCTGAGCAATTTGAAGGAGCATGGTGTTCCCTCCCTGTAATAGATCTCGACGAGGGAAAGCCACAGGCCAACCTTGATCGAGGTATACACTTCACCAACATCTTGAAAAGGTATTTGAAATTCCGTACTGAGAACAAAGACCGTCTGCATCCCCCCTTGGATAAATTTAGGCTTCGGATGGCGGTGATGTACCCGGATAGAGAAGATATTCTAGAAAAGTTGTTGACCAGTTTTGCACAAGAGAGAAGTGTCAAAGAGTTAGATCTCAGCTGTCCCACATTCACAAATATTGCACTAGAAAAGCGGCCGCAGTCATCCCCCCAAATACTCGTTAATATCAACTCTTTAACTAGTTTGAGTTTGGAGTCTGTGGGAATAGAGAATGATGTTACTCGTAGTGGTGATATACTTCTTCCATCTTTGAAGACCATGTCCCTCAAATCTATGCACCTGCAGTCTAGCTTTAAGTTTTTGTCCCATCTAATTAATTTCAAGGTGCCCTGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

214

Amino Acids

24.5

Weight (kDa)

7.73

Isoelectric Point (pI)

62.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 21 - 57 1.4e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022138)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g07881
rosa_chinensis RchiOBHm_Chr5g0009421
rosa_multiflora Rmu_sc0019489.1_g000001
rosa_samantha Rh5AG073400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 108, 594
Acc36I ACCTGC 2 cut(s) 108, 594
AccB1I GGYRCC 1 cut(s) 631
AccI GTMKAC 1 cut(s) 220
AciI CCGC 6 cut(s) 82, 114, 121, 317, 439, 443
AcoI YGGCCR 2 cut(s) 36, 440
AcsI RAATTY 4 cut(s) 28, 87, 254, 299
AfaI GTAC 2 cut(s) 262, 326
AgsI TTSAA 5 cut(s) 149, 241, 253, 559, 628
AhlI ACTAGT 1 cut(s) 485
AluBI AGCT 2 cut(s) 405, 597
AluI AGCT 2 cut(s) 405, 597
AoxI GGCC 3 cut(s) 36, 201, 440
ApoI RAATTY 4 cut(s) 28, 87, 254, 299
AseI ATTAAT 1 cut(s) 621
Asp700I GAANNNNTTC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 329
AsuHPI GGTGA 3 cut(s) 220, 331, 548
BaeGI GKGCMC 1 cut(s) 636
BanI GGYRCC 1 cut(s) 631
BbsI GAAGAC 1 cut(s) 566
BccI CCATC 4 cut(s) 125, 307, 559, 621
BceAI ACGGC 1 cut(s) 23
BcnI CCSGG 1 cut(s) 329
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 4 cut(s) 347, 431, 486, 594
BfmI CTRYAG 1 cut(s) 587
BfuAI ACCTGC 2 cut(s) 108, 594
BglII AGATCT 2 cut(s) 178, 397
BisI GCNGC 2 cut(s) 440, 443
BlsI GCNGC 2 cut(s) 441, 444
Bme1390I CCNGG 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 633
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 2 cut(s) 10, 292
BpiI GAAGAC 1 cut(s) 566
BpuMI CCSGG 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 33, 291
BsaWI WCCGGW 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 363
BseCI ATCGAT 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 33, 291
BseGI GGATG 4 cut(s) 117, 283, 318, 449
BseMII CTCAG 3 cut(s) 129, 255, 415
BseNI ACTGG 1 cut(s) 363
BseSI GKGCMC 1 cut(s) 636
BseX3I CGGCCG 1 cut(s) 440
Bsh1285I CGRYCG 1 cut(s) 443
BshFI GGCC 3 cut(s) 38, 203, 442
BshNI GGYRCC 1 cut(s) 631
BshVI ATCGAT 1 cut(s) 9
BsiEI CGRYCG 1 cut(s) 443
BsiSI CCGG 2 cut(s) 68, 329
BslFI GGGAC 3 cut(s) 393, 553, 595
BsmFI GGGAC 3 cut(s) 393, 553, 595
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 3 cut(s) 38, 203, 442
Bsp1286I GDGCHC 1 cut(s) 636
Bsp143I GATC 4 cut(s) 6, 178, 211, 397
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 6 cut(s) 82, 114, 121, 317, 439, 443
BspANI GGCC 3 cut(s) 38, 203, 442
BspCNI CTCAG 3 cut(s) 130, 256, 414
BspDI ATCGAT 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 633
BspMAI CTGCAG 1 cut(s) 591
BspMI ACCTGC 2 cut(s) 108, 594
BspT107I GGYRCC 1 cut(s) 631
BsrI ACTGG 1 cut(s) 363
BssECI CCNNGG 2 cut(s) 33, 291
BssMI GATC 4 cut(s) 6, 178, 211, 397
BssNAI GTATAC 1 cut(s) 221
BssT1I CCWWGG 2 cut(s) 33, 291
Bst1107I GTATAC 1 cut(s) 221
Bst4CI ACNGT 1 cut(s) 278
BstDEI CTNAG 3 cut(s) 138, 264, 401
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 4 cut(s) 117, 283, 318, 449
BstKTI GATC 4 cut(s) 9, 181, 214, 400
BstMBI GATC 4 cut(s) 6, 178, 211, 397
BstMCI CGRYCG 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 327
BstSFI CTRYAG 1 cut(s) 587
BstSLI GKGCMC 1 cut(s) 636
BstV2I GAAGAC 1 cut(s) 566
BstX2I RGATCY 2 cut(s) 178, 397
BstYI RGATCY 2 cut(s) 178, 397
BstZ17I GTATAC 1 cut(s) 221
BstZI CGGCCG 1 cut(s) 440
Bsu15I ATCGAT 1 cut(s) 9
BsuRI GGCC 3 cut(s) 38, 203, 442
BsuTUI ATCGAT 1 cut(s) 9
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 4 cut(s) 117, 283, 318, 449
BveI ACCTGC 2 cut(s) 108, 594
CciNI GCGGCCGC 1 cut(s) 440
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 2 cut(s) 261, 325
CviAII CATG 4 cut(s) 34, 124, 156, 565
CviJI RGCY 7 cut(s) 38, 196, 203, 307, 405, 442, 597
CviKI_1 RGCY 7 cut(s) 38, 196, 203, 307, 405, 442, 597
CviQI GTAC 2 cut(s) 261, 325
DdeI CTNAG 3 cut(s) 138, 264, 401
DpnI GATC 4 cut(s) 8, 180, 213, 399
DpnII GATC 4 cut(s) 6, 178, 211, 397
EaeI YGGCCR 2 cut(s) 36, 440
EagI CGGCCG 1 cut(s) 440
EciI GGCGGA 2 cut(s) 71, 103
EclXI CGGCCG 1 cut(s) 440
Eco130I CCWWGG 2 cut(s) 33, 291
Eco52I CGGCCG 1 cut(s) 440
EcoT14I CCWWGG 2 cut(s) 33, 291
ErhI CCWWGG 2 cut(s) 33, 291
FaeI CATG 4 cut(s) 37, 127, 159, 568
FaiI YATR 7 cut(s) 35, 125, 157, 221, 542, 566, 581
FaqI GGGAC 3 cut(s) 393, 553, 595
FatI CATG 4 cut(s) 33, 123, 155, 564
FblI GTMKAC 1 cut(s) 220
Fnu4HI GCNGC 2 cut(s) 440, 443
FokI GGATG 4 cut(s) 104, 270, 325, 436
Fsp4HI GCNGC 2 cut(s) 440, 443
FspBI CTAG 4 cut(s) 347, 431, 486, 594
GluI GCNGC 2 cut(s) 440, 443
HaeIII GGCC 3 cut(s) 38, 203, 442
HapII CCGG 2 cut(s) 68, 329
Hin1II CATG 4 cut(s) 37, 127, 159, 568
HincII GTYRAC 1 cut(s) 360
HindII GTYRAC 1 cut(s) 360
HinfI GANTC 1 cut(s) 500
HpaII CCGG 2 cut(s) 68, 329
HphI GGTGA 3 cut(s) 220, 331, 548
Hpy166II GTNNAC 2 cut(s) 221, 360
Hpy188I TCNGA 2 cut(s) 139, 312
Hpy188III TCNNGA 3 cut(s) 182, 238, 347
Hpy8I GTNNAC 2 cut(s) 221, 360
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 5 cut(s) 283, 371, 428, 583, 589
HpyF3I CTNAG 3 cut(s) 138, 264, 401
Hsp92II CATG 4 cut(s) 37, 127, 159, 568
Kzo9I GATC 4 cut(s) 6, 178, 211, 397
LmnI GCTCC 1 cut(s) 152
LpnPI CCDG 7 cut(s) 81, 113, 183, 185, 342, 376, 599
LweI GCATC 2 cut(s) 10, 292
MaeI CTAG 4 cut(s) 347, 431, 486, 594
MaeIII GTNAC 1 cut(s) 523
MalI GATC 4 cut(s) 8, 180, 213, 399
MboI GATC 4 cut(s) 6, 178, 211, 397
MboII GAAGA 3 cut(s) 350, 539, 571
MflI RGATCY 2 cut(s) 178, 397
MhlI GDGCHC 1 cut(s) 636
MluCI AATT 7 cut(s) 28, 87, 143, 254, 299, 618, 622
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 5 cut(s) 69, 176, 181, 209, 581
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 4 cut(s) 468, 482, 600, 621
MslI CAYNNNNRTG 1 cut(s) 122
MspA1I CMGCKG 1 cut(s) 405
MspI CCGG 2 cut(s) 68, 329
MspR9I CCNGG 1 cut(s) 329
Mva1269I GAATGC 1 cut(s) 129
NciI CCSGG 1 cut(s) 329
NcoI CCATGG 1 cut(s) 33
NdeII GATC 4 cut(s) 6, 178, 211, 397
NlaIII CATG 4 cut(s) 37, 127, 159, 568
NlaIV GGNNCC 1 cut(s) 633
NotI GCGGCCGC 1 cut(s) 440
PaqCI CACCTGC 2 cut(s) 108, 594
PctI GAATGC 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 342
PflFI GACNNNGTC 1 cut(s) 565
PkrI GCNGC 2 cut(s) 441, 444
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
PshBI ATTAAT 1 cut(s) 621
PspN4I GGNNCC 1 cut(s) 633
PstI CTGCAG 1 cut(s) 591
PsuI RGATCY 2 cut(s) 178, 397
PsyI GACNNNGTC 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 405
RsaI GTAC 2 cut(s) 262, 326
RsaNI GTAC 2 cut(s) 261, 325
RseI CAYNNNNRTG 1 cut(s) 122
SaqAI TTAA 4 cut(s) 468, 482, 600, 621
SatI GCNGC 2 cut(s) 440, 443
Sau3AI GATC 4 cut(s) 6, 178, 211, 397
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 329
SduI GDGCHC 1 cut(s) 636
SetI ASST 9 cut(s) 61, 102, 210, 220, 248, 407, 588, 599, 633
SfaNI GCATC 2 cut(s) 10, 292
SfcI CTRYAG 1 cut(s) 587
SmiMI CAYNNNNRTG 1 cut(s) 122
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 7 cut(s) 28, 87, 143, 254, 299, 618, 622
SsiI CCGC 6 cut(s) 82, 114, 121, 317, 439, 443
SspI AATATT 1 cut(s) 424
SspMI CTAG 4 cut(s) 347, 431, 486, 594
StyD4I CCNGG 1 cut(s) 327
StyI CCWWGG 2 cut(s) 33, 291
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 3 cut(s) 9, 183, 214
TasI AATT 7 cut(s) 28, 87, 143, 254, 299, 618, 622
TauI GCSGC 2 cut(s) 442, 445
Tru1I TTAA 4 cut(s) 468, 482, 600, 621
Tru9I TTAA 4 cut(s) 468, 482, 600, 621
TspGWI ACGGA 1 cut(s) 248
Tth111I GACNNNGTC 1 cut(s) 565
VspI ATTAAT 1 cut(s) 621
XapI RAATTY 4 cut(s) 28, 87, 254, 299
XbaI TCTAGA 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 220
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 4 cut(s) 347, 431, 486, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.