FvH4_1g11880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0018347
Physical Location & Seq
Forward (+)
6501193 .. 6501893
701 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g11880.t1

Sequence Viewer

Length: 423 bp
ATGCAGACACCCATAGGAAGCCCCAAGATGAGAACCACCCAATGCATTCCCAGGCTGATGAAAACCAACAAGTTCAAGACCTCCAAACCCCTAGTATCTCCCATGACCTTGCTCGAGCGGTTTCGCGAGGCGGTTTTGCGGTTGATCATGTTGTCTGCAGTGTCCAACAGGTCCACAGCGAACCAAAATCGATCCACAGATTATGTGCAGCAATGTACATACTCTCCCTATGACCCTCACCACAGCGAGGCGGTCGCCGACTGCATCGAGTTCATCAAGAAGAAAGCTTCTCCCGACGACGACGACAACCGGCGATCGTCAGGTAGTAGTGCCAGTAGTTGCAATACTGATGCCGCTGTGGATCTAGATGTCATCATACCTGTGCTAGTTAACTACGTGACATATGTTAATGAGAGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.65

Weight (kDa)

8.37

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11880
prunus_persica Prupe.7G167900_v2.0.a1
rosa_laevigata RLG00000016886
rosa_roxburghii Rroxscaffold_2G00143040
rosa_rugosa Rorug02G0080000
rosa_samantha Rh2AG130000 Rh2BG133100 Rh2CG133700 Rh2DG134000
rosa_wichuraiana Rw2G010010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 118
AccII CGCG 1 cut(s) 126
AciI CCGC 5 cut(s) 118, 131, 139, 251, 354
AclWI GGATC 2 cut(s) 186, 369
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 247
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 1 cut(s) 287
AluI AGCT 1 cut(s) 287
AlwI GGATC 2 cut(s) 186, 369
Ama87I CYCGRG 1 cut(s) 113
ApeKI GCWGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 230
AvaI CYCGRG 1 cut(s) 113
AvaII GGWCC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 220
BciT130I CCWGG 1 cut(s) 52
BclI TGATCA 1 cut(s) 144
BfaI CTAG 3 cut(s) 92, 365, 386
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 2 cut(s) 209, 354
BlsI GCNGC 2 cut(s) 210, 355
Bme1390I CCNGG 1 cut(s) 52
Bme18I GGWCC 1 cut(s) 171
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 52
BmsI GCATC 2 cut(s) 273, 340
Bsa29I ATCGAT 1 cut(s) 190
BsaAI YACGTR 1 cut(s) 397
BsaJI CCNNGG 1 cut(s) 50
BsaXI ACNNNNNCTCC 2 cut(s) 208, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 247
Bse118I RCCGGY 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 333
Bse3DI GCAATG 1 cut(s) 218
BseBI CCWGG 1 cut(s) 52
BseCI ATCGAT 1 cut(s) 190
BseDI CCNNGG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 247
BseMI GCAATG 1 cut(s) 218
BseNI ACTGG 1 cut(s) 333
BseXI GCAGC 1 cut(s) 220
BsgI GTGCAG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 126
Bsh1285I CGRYCG 2 cut(s) 255, 317
BshVI ATCGAT 1 cut(s) 190
BsiEI CGRYCG 2 cut(s) 255, 317
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 247
BsmI GAATGC 1 cut(s) 45
BsoBI CYCGRG 1 cut(s) 113
Bsp1407I TGTACA 1 cut(s) 215
Bsp143I GATC 4 cut(s) 144, 191, 314, 361
Bsp68I TCGCGA 1 cut(s) 126
BspACI CCGC 5 cut(s) 118, 131, 139, 251, 354
BspDI ATCGAT 1 cut(s) 190
BspFNI CGCG 1 cut(s) 126
BspMAI CTGCAG 1 cut(s) 160
BspPI GGATC 2 cut(s) 186, 369
BsrBI CCGCTC 1 cut(s) 118
BsrDI GCAATG 1 cut(s) 218
BsrFI RCCGGY 1 cut(s) 309
BsrGI TGTACA 1 cut(s) 215
BsrI ACTGG 1 cut(s) 333
BssAI RCCGGY 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 50
BssMI GATC 4 cut(s) 144, 191, 314, 361
Bst2UI CCWGG 1 cut(s) 52
BstAUI TGTACA 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 397
BstFNI CGCG 1 cut(s) 126
BstKTI GATC 4 cut(s) 147, 194, 317, 364
BstMBI GATC 4 cut(s) 144, 191, 314, 361
BstMCI CGRYCG 2 cut(s) 255, 317
BstNI CCWGG 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 220
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
Bsu15I ATCGAT 1 cut(s) 190
BsuTUI ATCGAT 1 cut(s) 190
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
BtuMI TCGCGA 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 309
Cfr13I GGNCC 1 cut(s) 171
ClaI ATCGAT 1 cut(s) 190
Csp6I GTAC 1 cut(s) 216
CviAII CATG 2 cut(s) 103, 148
CviJI RGCY 3 cut(s) 21, 55, 287
CviKI_1 RGCY 3 cut(s) 21, 55, 287
CviQI GTAC 1 cut(s) 216
DpnI GATC 4 cut(s) 146, 193, 316, 363
DpnII GATC 4 cut(s) 144, 191, 314, 361
Eco47I GGWCC 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 50
EcoT22I ATGCAT 1 cut(s) 47
FaeI CATG 2 cut(s) 106, 151
FaiI YATR 9 cut(s) 14, 104, 149, 204, 220, 231, 377, 403, 405
FatI CATG 2 cut(s) 102, 147
FauNDI CATATG 1 cut(s) 403
FbaI TGATCA 1 cut(s) 144
Fnu4HI GCNGC 2 cut(s) 209, 354
Fsp4HI GCNGC 2 cut(s) 209, 354
FspBI CTAG 3 cut(s) 92, 365, 386
GluI GCNGC 2 cut(s) 209, 354
HapII CCGG 1 cut(s) 310
Hin1II CATG 2 cut(s) 106, 151
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 285
HinfI GANTC 1 cut(s) 415
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 1 cut(s) 310
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 2 cut(s) 174, 391
Hpy188III TCNNGA 5 cut(s) 76, 125, 277, 293, 365
Hpy8I GTNNAC 2 cut(s) 174, 391
Hpy99I CGWCG 3 cut(s) 299, 302, 305
HpyCH4IV ACGT 1 cut(s) 396
HpyCH4V TGCA 6 cut(s) 4, 45, 158, 208, 264, 342
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 2 cut(s) 106, 151
Ksp22I TGATCA 1 cut(s) 144
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 4 cut(s) 144, 191, 314, 361
LpnPI CCDG 7 cut(s) 37, 64, 154, 306, 323, 346, 393
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 2 cut(s) 273, 340
MaeI CTAG 3 cut(s) 92, 365, 386
MaeII ACGT 1 cut(s) 396
MaeIII GTNAC 1 cut(s) 397
MalI GATC 4 cut(s) 146, 193, 316, 363
MbiI CCGCTC 1 cut(s) 118
MboI GATC 4 cut(s) 144, 191, 314, 361
MboII GAAGA 1 cut(s) 292
MflI RGATCY 1 cut(s) 361
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 4 cut(s) 91, 121, 241, 246
Mph1103I ATGCAT 1 cut(s) 47
MseI TTAA 2 cut(s) 390, 408
MslI CAYNNNNRTG 1 cut(s) 380
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 1 cut(s) 310
MspR9I CCNGG 1 cut(s) 52
Mva1269I GAATGC 1 cut(s) 45
MvaI CCWGG 1 cut(s) 52
MvnI CGCG 1 cut(s) 126
NdeI CATATG 1 cut(s) 403
NdeII GATC 4 cut(s) 144, 191, 314, 361
NlaIII CATG 2 cut(s) 106, 151
NmuCI GTSAC 1 cut(s) 397
NruI TCGCGA 1 cut(s) 126
NsiI ATGCAT 1 cut(s) 47
PaeR7I CTCGAG 1 cut(s) 113
PctI GAATGC 1 cut(s) 45
PkrI GCNGC 2 cut(s) 210, 355
Ple19I CGATCG 1 cut(s) 317
Ppu21I YACGTR 1 cut(s) 397
Psp6I CCWGG 1 cut(s) 50
PspGI CCWGG 1 cut(s) 50
PspPI GGNCC 1 cut(s) 171
PspXI VCTCGAGB 1 cut(s) 113
PstI CTGCAG 1 cut(s) 160
PsuI RGATCY 1 cut(s) 361
PvuI CGATCG 1 cut(s) 317
RruI TCGCGA 1 cut(s) 126
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
RseI CAYNNNNRTG 1 cut(s) 380
SaqAI TTAA 2 cut(s) 390, 408
SatI GCNGC 2 cut(s) 209, 354
Sau3AI GATC 4 cut(s) 144, 191, 314, 361
Sau96I GGNCC 1 cut(s) 171
ScrFI CCNGG 1 cut(s) 52
SetI ASST 7 cut(s) 83, 110, 173, 289, 325, 382, 399
SfaNI GCATC 2 cut(s) 273, 340
SfcI CTRYAG 1 cut(s) 156
Sfr274I CTCGAG 1 cut(s) 113
SinI GGWCC 1 cut(s) 171
SlaI CTCGAG 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
SsiI CCGC 5 cut(s) 118, 131, 139, 251, 354
SspMI CTAG 3 cut(s) 92, 365, 386
StyD4I CCNGG 1 cut(s) 50
TaiI ACGT 1 cut(s) 399
TaqI TCGA 3 cut(s) 114, 190, 267
TatI WGTACW 1 cut(s) 215
TauI GCSGC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 390, 408
Tru9I TTAA 2 cut(s) 390, 408
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 2 cut(s) 74, 262
TspRI CASTG 1 cut(s) 165
VpaK11BI GGWCC 1 cut(s) 171
XbaI TCTAGA 1 cut(s) 364
XhoI CTCGAG 1 cut(s) 113
XspI CTAG 3 cut(s) 92, 365, 386
Zsp2I ATGCAT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.