Rorug02G0080000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0018347
Physical Location & Seq
Reverse (-)
6474761 .. 6475344
584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0080000.1

Sequence Viewer

Length: 495 bp
ATGTTTGTGGGCGTGGGGGCTGCGAGAGTGAGGAAGCTTTTCAATGCTGCAAAAGAGAAATCTCCCAGCATTATATTTATTGACGAAATAGATGCTGTTGGGGGACAACGAAGATCCGATGGCTATAGGGATACAGTGAACCAGTTGCTAGTCGAACTAGATGGCTTCAAACAAAATGATGGAGTAATTGTGATAGATGTTAAAGGACGGAGGGAGATATTGGAATCATACATGTCGAAAGTAGTTTCGGCAGATGGTGTAAACCTGGGCGTTATTGCTAGAGGAACTACGGGGTTTTCAGCTGCTGATCTTGCGAACTTGGTCAACATTGCAGCCGTGAAAGCAGCAGTTGATGGTTCGAAACAAGTGAGCATGGCTGATCTTGAACATGCCAAGGATAGGATCATGATGGGAACCGAGCGAAAATCTGCAGTTAAATCTGAAGAATTACGATTGTATCACGAGGAATGTCTCTCGGCATGGTTGCTCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

164

Amino Acids

17.83

Weight (kDa)

6.15

Isoelectric Point (pI)

38.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 2 - 65 5e-16 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 87 - 129 2.7e-10 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11880
prunus_persica Prupe.7G167900_v2.0.a1
rosa_laevigata RLG00000016886
rosa_roxburghii Rroxscaffold_2G00143040
rosa_rugosa Rorug02G0080000
rosa_samantha Rh2AG130000 Rh2BG133100 Rh2CG133700 Rh2DG134000
rosa_wichuraiana Rw2G010010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 108, 410
AcuI CTGAAG 1 cut(s) 462
AfiI CCNNNNNNNGG 1 cut(s) 399
AflIII ACRYGT 1 cut(s) 231
AgsI TTSAA 3 cut(s) 43, 169, 386
AjnI CCWGG 1 cut(s) 264
AluBI AGCT 2 cut(s) 37, 302
AluI AGCT 2 cut(s) 37, 302
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 2 cut(s) 108, 410
AlwNI CAGNNNCTG 1 cut(s) 305
ApeKI GCWGC 5 cut(s) 20, 47, 302, 332, 344
Asp700I GAANNNNTTC 1 cut(s) 38
AsuII TTCGAA 1 cut(s) 359
BaeI ACNNNNGTAYC 2 cut(s) 440, 473
BauI CACGAG 1 cut(s) 461
BbvI GCAGC 5 cut(s) 7, 34, 289, 344, 356
BccI CCATC 6 cut(s) 113, 155, 173, 248, 347, 403
BceAI ACGGC 1 cut(s) 320
BcgI CGANNNNNNTGC 2 cut(s) 74, 108
BciT130I CCWGG 1 cut(s) 266
BciVI GTATCC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 476
BfaI CTAG 3 cut(s) 149, 158, 279
BfmI CTRYAG 2 cut(s) 124, 429
BfuI GTATCC 1 cut(s) 124
BisI GCNGC 5 cut(s) 21, 48, 303, 333, 345
BlsI GCNGC 5 cut(s) 22, 49, 304, 334, 346
Bme1390I CCNGG 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 266
BmsI GCATC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 265, 393
BsaXI ACNNNNNCTCC 2 cut(s) 174, 204
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 1 cut(s) 142
Bse3DI GCAATG 1 cut(s) 327
BseBI CCWGG 1 cut(s) 266
BseDI CCNNGG 2 cut(s) 265, 393
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMI GCAATG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 142
BseXI GCAGC 5 cut(s) 7, 34, 289, 344, 356
BseYI CCCAGC 1 cut(s) 65
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 117
Bsp119I TTCGAA 1 cut(s) 359
Bsp143I GATC 4 cut(s) 113, 307, 379, 402
BspHI TCATGA 1 cut(s) 405
BspLI GGNNCC 1 cut(s) 415
BspMAI CTGCAG 1 cut(s) 433
BspPI GGATC 2 cut(s) 108, 410
BspT104I TTCGAA 1 cut(s) 359
BsrDI GCAATG 1 cut(s) 327
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 2 cut(s) 265, 393
BssMI GATC 4 cut(s) 113, 307, 379, 402
BssSI CACGAG 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 393
Bst2BI CACGAG 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 266
Bst4CI ACNGT 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 359
BstKTI GATC 4 cut(s) 116, 310, 382, 405
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 4 cut(s) 113, 307, 379, 402
BstMWI GCNNNNNNNGC 2 cut(s) 311, 341
BstNI CCWGG 1 cut(s) 266
BstNSI RCATGY 2 cut(s) 235, 392
BstSCI CCNGG 1 cut(s) 264
BstSFI CTRYAG 2 cut(s) 124, 429
BstV1I GCAGC 5 cut(s) 7, 34, 289, 344, 356
BstX2I RGATCY 1 cut(s) 113
BstYI RGATCY 1 cut(s) 113
BsuI GTATCC 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 141
CaiI CAGNNNCTG 1 cut(s) 305
CciI TCATGA 1 cut(s) 405
CviAII CATG 5 cut(s) 232, 373, 389, 406, 480
CviJI RGCY 7 cut(s) 20, 37, 123, 165, 302, 335, 377
CviKI_1 RGCY 7 cut(s) 20, 37, 123, 165, 302, 335, 377
DpnI GATC 4 cut(s) 115, 309, 381, 404
DpnII GATC 4 cut(s) 113, 307, 379, 402
Eco130I CCWWGG 1 cut(s) 393
Eco57I CTGAAG 1 cut(s) 462
EcoRII CCWGG 1 cut(s) 264
EcoT14I CCWWGG 1 cut(s) 393
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 5 cut(s) 235, 376, 392, 409, 483
FaiI YATR 8 cut(s) 74, 126, 229, 233, 374, 390, 407, 481
FaqI GGGAC 1 cut(s) 117
FatI CATG 5 cut(s) 231, 372, 388, 405, 479
Fnu4HI GCNGC 5 cut(s) 21, 48, 303, 333, 345
Fsp4HI GCNGC 5 cut(s) 21, 48, 303, 333, 345
FspBI CTAG 3 cut(s) 149, 158, 279
GluI GCNGC 5 cut(s) 21, 48, 303, 333, 345
GsaI CCCAGC 1 cut(s) 69
Hin1II CATG 5 cut(s) 235, 376, 392, 409, 483
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 35
HinfI GANTC 1 cut(s) 224
Hpy166II GTNNAC 3 cut(s) 139, 262, 325
Hpy188I TCNGA 2 cut(s) 118, 442
Hpy188III TCNNGA 3 cut(s) 383, 406, 461
Hpy8I GTNNAC 3 cut(s) 139, 262, 325
HpyCH4III ACNGT 1 cut(s) 136
HpyCH4V TGCA 3 cut(s) 50, 332, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 311, 341
Hsp92II CATG 5 cut(s) 235, 376, 392, 409, 483
Kzo9I GATC 4 cut(s) 113, 307, 379, 402
LpnPI CCDG 4 cut(s) 79, 155, 251, 278
Lsp1109I GCAGC 5 cut(s) 7, 34, 289, 344, 356
LweI GCATC 1 cut(s) 82
MaeI CTAG 3 cut(s) 149, 158, 279
MalI GATC 4 cut(s) 115, 309, 381, 404
MboI GATC 4 cut(s) 113, 307, 379, 402
MboII GAAGA 2 cut(s) 123, 455
MflI RGATCY 1 cut(s) 113
MluCI AATT 2 cut(s) 186, 446
MnlI CCTC 4 cut(s) 24, 204, 275, 457
MroXI GAANNNNTTC 1 cut(s) 38
MseI TTAA 2 cut(s) 201, 435
MspA1I CMGCKG 1 cut(s) 302
MspR9I CCNGG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 266
MwoI GCNNNNNNNGC 2 cut(s) 311, 341
NdeII GATC 4 cut(s) 113, 307, 379, 402
NlaIII CATG 5 cut(s) 235, 376, 392, 409, 483
NlaIV GGNNCC 1 cut(s) 415
NmeAIII GCCGAG 1 cut(s) 455
NspI RCATGY 2 cut(s) 235, 392
NspV TTCGAA 1 cut(s) 359
PagI TCATGA 1 cut(s) 405
PciI ACATGT 1 cut(s) 231
PdmI GAANNNNTTC 1 cut(s) 38
PfeI GAWTC 1 cut(s) 224
PkrI GCNGC 5 cut(s) 22, 49, 304, 334, 346
PscI ACATGT 1 cut(s) 231
Psp6I CCWGG 1 cut(s) 264
PspFI CCCAGC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 264
PspN4I GGNNCC 1 cut(s) 415
PstI CTGCAG 1 cut(s) 433
PstNI CAGNNNCTG 1 cut(s) 305
PsuI RGATCY 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 302
SaqAI TTAA 2 cut(s) 201, 435
SatI GCNGC 5 cut(s) 21, 48, 303, 333, 345
Sau3AI GATC 4 cut(s) 113, 307, 379, 402
ScrFI CCNGG 1 cut(s) 266
SetI ASST 3 cut(s) 39, 267, 304
SfaNI GCATC 1 cut(s) 82
SfcI CTRYAG 2 cut(s) 124, 429
SfuI TTCGAA 1 cut(s) 359
Sse9I AATT 2 cut(s) 186, 446
SspMI CTAG 3 cut(s) 149, 158, 279
StyD4I CCNGG 1 cut(s) 264
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 1 cut(s) 136
TaqI TCGA 3 cut(s) 153, 236, 359
TasI AATT 2 cut(s) 186, 446
TfiI GAWTC 1 cut(s) 224
Tru1I TTAA 2 cut(s) 201, 435
Tru9I TTAA 2 cut(s) 201, 435
TscAI CASTG 1 cut(s) 141
TseI GCWGC 5 cut(s) 20, 47, 302, 332, 344
TspGWI ACGGA 1 cut(s) 223
TspRI CASTG 1 cut(s) 141
XceI RCATGY 2 cut(s) 235, 392
XmnI GAANNNNTTC 1 cut(s) 38
XspI CTAG 3 cut(s) 149, 158, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.