Rw2G010010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018347
Physical Location & Seq
Forward (+)
10163274 .. 10163845
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G010010.1

Sequence Viewer

Length: 435 bp
ATGCAGAAACCCATAGGAAGCCCCAAGATGAGAACCACCCATCTATGCATTCCAAGGCTGATGAAAACCAGCAAGTACTCCAACAAAACCTCTAAACCCCTGGTATCTCCCATGACCCTGCTCGAGCGGTTTCGCGAGGCGGTTTTGCGATTGATCATGTTATCTGCAGTGTCCAACAAGTCCACAGCGAACCAAAATCGATCCACAGATTATGTGCAGCAATGTACATACTGCCCTTATGACCCTCACCACAGCGAGGCGGTTGCCGACTGCATCGAGTTCATCAAGAAGAAGGCTTCTCCCGAGGACGAGGACCACAACCGGGGATCGTCAGCTAGTAGTGCTAGTAGTTCCAATATTGATGCCGCGGCGGATCTAGAGGTCATCATACCAGTGCTAGTTAATTATGTGACATATGTTAACGAGAGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.04

Weight (kDa)

8.34

Isoelectric Point (pI)

50.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018347)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g11880
prunus_persica Prupe.7G167900_v2.0.a1
rosa_laevigata RLG00000016886
rosa_roxburghii Rroxscaffold_2G00143040
rosa_rugosa Rorug02G0080000
rosa_samantha Rh2AG130000 Rh2BG133100 Rh2CG133700 Rh2DG134000
rosa_wichuraiana Rw2G010010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 127
AccII CGCG 2 cut(s) 135, 368
AciI CCGC 6 cut(s) 127, 140, 260, 366, 368, 371
AclWI GGATC 3 cut(s) 195, 334, 381
AfaI GTAC 2 cut(s) 77, 226
AfiI CCNNNNNNNGG 2 cut(s) 256, 322
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
AlwI GGATC 3 cut(s) 195, 334, 381
Ama87I CYCGRG 2 cut(s) 122, 302
ApeKI GCWGC 1 cut(s) 217
AspS9I GGNCC 1 cut(s) 313
AsuC2I CCSGG 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 239
AvaI CYCGRG 2 cut(s) 122, 302
AvaII GGWCC 1 cut(s) 313
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 48
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 1 cut(s) 101
BclI TGATCA 1 cut(s) 153
BcnI CCSGG 1 cut(s) 323
BfaI CTAG 4 cut(s) 336, 345, 377, 398
BfmI CTRYAG 1 cut(s) 165
BisI GCNGC 3 cut(s) 218, 366, 369
BlsI GCNGC 3 cut(s) 219, 367, 370
BmcAI AGTACT 1 cut(s) 77
Bme1390I CCNGG 2 cut(s) 101, 323
Bme18I GGWCC 1 cut(s) 313
BmeT110I CYCGRG 2 cut(s) 122, 302
BmgT120I GGNCC 1 cut(s) 313
BmrFI CCNGG 2 cut(s) 101, 323
BmsI GCATC 2 cut(s) 282, 352
BpuMI CCSGG 1 cut(s) 323
Bsa29I ATCGAT 1 cut(s) 199
BsaJI CCNNGG 5 cut(s) 53, 99, 303, 322, 366
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 322
Bse1I ACTGG 1 cut(s) 392
Bse3DI GCAATG 1 cut(s) 227
BseBI CCWGG 1 cut(s) 101
BseCI ATCGAT 1 cut(s) 199
BseDI CCNNGG 5 cut(s) 53, 99, 303, 322, 366
BseLI CCNNNNNNNGG 2 cut(s) 256, 322
BseMI GCAATG 1 cut(s) 227
BseNI ACTGG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 236
Bsh1236I CGCG 2 cut(s) 135, 368
BshVI ATCGAT 1 cut(s) 199
BsiHKCI CYCGRG 2 cut(s) 122, 302
BsiSI CCGG 1 cut(s) 322
BslI CCNNNNNNNGG 2 cut(s) 256, 322
BsmI GAATGC 1 cut(s) 48
BsoBI CYCGRG 2 cut(s) 122, 302
Bsp1407I TGTACA 1 cut(s) 224
Bsp143I GATC 4 cut(s) 153, 200, 326, 373
Bsp68I TCGCGA 1 cut(s) 135
BspACI CCGC 6 cut(s) 127, 140, 260, 366, 368, 371
BspDI ATCGAT 1 cut(s) 199
BspFNI CGCG 2 cut(s) 135, 368
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 3 cut(s) 195, 334, 381
BsrBI CCGCTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 227
BsrGI TGTACA 1 cut(s) 224
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 5 cut(s) 53, 99, 303, 322, 366
BssMI GATC 4 cut(s) 153, 200, 326, 373
BssT1I CCWWGG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 101
BstAUI TGTACA 1 cut(s) 224
BstDSI CCRYGG 1 cut(s) 366
BstFNI CGCG 2 cut(s) 135, 368
BstKTI GATC 4 cut(s) 156, 203, 329, 376
BstMBI GATC 4 cut(s) 153, 200, 326, 373
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 2 cut(s) 99, 321
BstSFI CTRYAG 1 cut(s) 165
BstUI CGCG 2 cut(s) 135, 368
BstV1I GCAGC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
Bsu15I ATCGAT 1 cut(s) 199
BsuTUI ATCGAT 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 174
BtsIMutI CAGTG 2 cut(s) 174, 399
BtuMI TCGCGA 1 cut(s) 135
Cfr13I GGNCC 1 cut(s) 313
Cfr42I CCGCGG 1 cut(s) 369
ClaI ATCGAT 1 cut(s) 199
Csp6I GTAC 2 cut(s) 76, 225
CviAII CATG 2 cut(s) 112, 157
CviJI RGCY 4 cut(s) 21, 58, 296, 335
CviKI_1 RGCY 4 cut(s) 21, 58, 296, 335
CviQI GTAC 2 cut(s) 76, 225
DpnI GATC 4 cut(s) 155, 202, 328, 375
DpnII GATC 4 cut(s) 153, 200, 326, 373
EciI GGCGGA 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 313
Eco88I CYCGRG 2 cut(s) 122, 302
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 53
EcoT22I ATGCAT 1 cut(s) 50
ErhI CCWWGG 1 cut(s) 53
FaeI CATG 2 cut(s) 115, 160
FatI CATG 2 cut(s) 111, 156
FauNDI CATATG 1 cut(s) 415
FbaI TGATCA 1 cut(s) 153
Fnu4HI GCNGC 3 cut(s) 218, 366, 369
Fsp4HI GCNGC 3 cut(s) 218, 366, 369
FspBI CTAG 4 cut(s) 336, 345, 377, 398
GluI GCNGC 3 cut(s) 218, 366, 369
HapII CCGG 1 cut(s) 322
Hin1II CATG 2 cut(s) 115, 160
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 1 cut(s) 427
HpaI GTTAAC 1 cut(s) 421
HpaII CCGG 1 cut(s) 322
HphI GGTGA 1 cut(s) 239
Hpy166II GTNNAC 2 cut(s) 183, 421
Hpy188III TCNNGA 4 cut(s) 134, 286, 302, 377
Hpy8I GTNNAC 2 cut(s) 183, 421
HpyAV CCTTC 1 cut(s) 286
HpyCH4V TGCA 5 cut(s) 4, 48, 167, 217, 273
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
Hsp92II CATG 2 cut(s) 115, 160
Ksp22I TGATCA 1 cut(s) 153
KspAI GTTAAC 1 cut(s) 421
KspI CCGCGG 1 cut(s) 369
Kzo9I GATC 4 cut(s) 153, 200, 326, 373
LpnPI CCDG 6 cut(s) 82, 86, 113, 131, 335, 405
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 2 cut(s) 282, 352
MaeI CTAG 4 cut(s) 336, 345, 377, 398
MaeIII GTNAC 1 cut(s) 409
MalI GATC 4 cut(s) 155, 202, 328, 375
MbiI CCGCTC 1 cut(s) 127
MboI GATC 4 cut(s) 153, 200, 326, 373
MboII GAAGA 1 cut(s) 301
MflI RGATCY 1 cut(s) 373
MluCI AATT 1 cut(s) 403
MmeI TCCRAC 2 cut(s) 105, 198
MnlI CCTC 7 cut(s) 100, 130, 250, 255, 298, 304, 373
Mph1103I ATGCAT 1 cut(s) 50
MseI TTAA 2 cut(s) 402, 420
MslI CAYNNNNRTG 1 cut(s) 392
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 1 cut(s) 322
MspR9I CCNGG 2 cut(s) 101, 323
Mva1269I GAATGC 1 cut(s) 48
MvaI CCWGG 1 cut(s) 101
MvnI CGCG 2 cut(s) 135, 368
MwoI GCNNNNNNNGC 1 cut(s) 341
NciI CCSGG 1 cut(s) 323
NdeI CATATG 1 cut(s) 415
NdeII GATC 4 cut(s) 153, 200, 326, 373
NlaIII CATG 2 cut(s) 115, 160
NmuCI GTSAC 1 cut(s) 409
NruI TCGCGA 1 cut(s) 135
NsiI ATGCAT 1 cut(s) 50
PaeR7I CTCGAG 1 cut(s) 122
PctI GAATGC 1 cut(s) 48
PkrI GCNGC 3 cut(s) 219, 367, 370
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspPI GGNCC 1 cut(s) 313
PspXI VCTCGAGB 1 cut(s) 122
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 1 cut(s) 373
RruI TCGCGA 1 cut(s) 135
RsaI GTAC 2 cut(s) 77, 226
RsaNI GTAC 2 cut(s) 76, 225
RseI CAYNNNNRTG 1 cut(s) 392
SacII CCGCGG 1 cut(s) 369
SaqAI TTAA 2 cut(s) 402, 420
SatI GCNGC 3 cut(s) 218, 366, 369
Sau3AI GATC 4 cut(s) 153, 200, 326, 373
Sau96I GGNCC 1 cut(s) 313
ScaI AGTACT 1 cut(s) 77
ScrFI CCNGG 2 cut(s) 101, 323
SetI ASST 3 cut(s) 92, 337, 384
SfaNI GCATC 2 cut(s) 282, 352
SfcI CTRYAG 1 cut(s) 165
Sfr274I CTCGAG 1 cut(s) 122
Sfr303I CCGCGG 1 cut(s) 369
SgrBI CCGCGG 1 cut(s) 369
SinI GGWCC 1 cut(s) 313
SlaI CTCGAG 1 cut(s) 122
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
Sse9I AATT 1 cut(s) 403
SsiI CCGC 6 cut(s) 127, 140, 260, 366, 368, 371
SspI AATATT 1 cut(s) 358
SspMI CTAG 4 cut(s) 336, 345, 377, 398
StyD4I CCNGG 2 cut(s) 99, 321
StyI CCWWGG 1 cut(s) 53
TaqI TCGA 3 cut(s) 123, 199, 276
TasI AATT 1 cut(s) 403
TatI WGTACW 2 cut(s) 75, 224
TauI GCSGC 2 cut(s) 368, 371
Tru1I TTAA 2 cut(s) 402, 420
Tru9I TTAA 2 cut(s) 402, 420
TscAI CASTG 2 cut(s) 174, 399
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 1 cut(s) 217
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 77, 271
TspRI CASTG 2 cut(s) 174, 399
VpaK11BI GGWCC 1 cut(s) 313
XbaI TCTAGA 1 cut(s) 376
XhoI CTCGAG 1 cut(s) 122
XspI CTAG 4 cut(s) 336, 345, 377, 398
ZrmI AGTACT 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.