FvH4_1g12580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0019652
Physical Location & Seq
Reverse (-)
6905435 .. 6905803
369 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12580.t1

Sequence Viewer

Length: 369 bp
ATGGAAGCTCATGTTCGACTTCCGCTCCCTCACCTTCCCCCACTGCTTCGACGACGAGCTCACGCGCCTCCGCTACAACGCCGCCTACTTCCGCATGAACTACGCCATCGTCGTCCTCCTGATCCTCTTCCTCAGCCTCCTCTGGCACCTGATCTCGCTCATCATCCTCATCGTGATGCTCGCCGCCTGGCTCTTCCTCTACTTCCTCCGAGACGAGCCGCTCGTCCTCTTCGGCAGCACCGTCGTGAAGATTGTGCTTCTCTTTCTGACGTCGGCCACAATGAACATCCTGGTGGCTCTGCTGATCGCAGTGGTGGTGGTGGCGGTGCACGCGATGCTGAGGAAGACAAAGGATTTGCACGTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.7

Weight (kDa)

11.58

Isoelectric Point (pI)

93.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019652)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12580
pyrus_communis pycom17g18170
rosa_samantha Rh3AG030100 Rh3BG030500 Rh3CG029400 Rh6AG313700 Rh6BG321200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 145
AccBSI CCGCTC 2 cut(s) 25, 221
AccII CGCG 2 cut(s) 65, 333
AciI CCGC 7 cut(s) 23, 71, 82, 92, 184, 219, 324
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 274
AcyI GRCGYC 1 cut(s) 270
AjiI CACGTC 1 cut(s) 362
AjnI CCWGG 2 cut(s) 186, 289
AleI CACNNNNGTG 1 cut(s) 243
AluBI AGCT 2 cut(s) 8, 59
AluI AGCT 2 cut(s) 8, 59
Alw21I GWGCWC 2 cut(s) 61, 331
Alw26I GTCTC 1 cut(s) 205
Alw44I GTGCAC 1 cut(s) 327
AlwI GGATC 1 cut(s) 116
AoxI GGCC 1 cut(s) 274
ApaLI GTGCAC 1 cut(s) 327
ApeKI GCWGC 1 cut(s) 235
ArsI GACNNNNNNTTYG 1 cut(s) 338
AspLEI GCGC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 331
BanI GGYRCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 61
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 2 cut(s) 61, 331
BbvCI CCTCAGC 2 cut(s) 132, 339
BbvI GCAGC 1 cut(s) 247
BccI CCATC 1 cut(s) 114
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 2 cut(s) 188, 291
BcoDI GTCTC 1 cut(s) 205
BisI GCNGC 4 cut(s) 82, 184, 219, 236
BlsI GCNGC 4 cut(s) 83, 185, 220, 237
Bme1390I CCNGG 2 cut(s) 188, 291
BmgBI CACGTC 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 2 cut(s) 188, 291
BmsI GCATC 2 cut(s) 166, 325
BpiI GAAGAC 1 cut(s) 351
Bpu10I CCTNAGC 2 cut(s) 132, 339
BsaHI GRCGYC 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 9, 39
BseBI CCWGG 2 cut(s) 188, 291
BseGI GGATG 2 cut(s) 163, 286
BseMII CTCAG 2 cut(s) 146, 330
BseRI GAGGAG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 331
BseXI GCAGC 1 cut(s) 247
Bsh1236I CGCG 2 cut(s) 65, 333
BshFI GGCC 1 cut(s) 276
BshNI GGYRCC 1 cut(s) 145
BsiHKAI GWGCWC 2 cut(s) 61, 331
BsmAI GTCTC 1 cut(s) 205
BsmBI CGTCTC 1 cut(s) 205
BsnI GGCC 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 61, 331
Bsp143I GATC 3 cut(s) 121, 151, 304
BspACI CCGC 7 cut(s) 23, 71, 82, 92, 184, 219, 324
BspANI GGCC 1 cut(s) 276
BspCNI CTCAG 2 cut(s) 145, 331
BspFNI CGCG 2 cut(s) 65, 333
BspLI GGNNCC 1 cut(s) 147
BspPI GGATC 1 cut(s) 116
BspQI GCTCTTC 1 cut(s) 198
BspT107I GGYRCC 1 cut(s) 145
BsrBI CCGCTC 2 cut(s) 25, 221
BssMI GATC 3 cut(s) 121, 151, 304
BssNI GRCGYC 1 cut(s) 270
Bst2UI CCWGG 2 cut(s) 188, 291
Bst4CI ACNGT 1 cut(s) 242
Bst6I CTCTTC 3 cut(s) 132, 198, 234
BstACI GRCGYC 1 cut(s) 270
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 181, 331
BstDEI CTNAG 2 cut(s) 132, 339
BstF5I GGATG 2 cut(s) 163, 286
BstFNI CGCG 2 cut(s) 65, 333
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 3 cut(s) 124, 154, 307
BstMAI GTCTC 1 cut(s) 205
BstMBI GATC 3 cut(s) 121, 151, 304
BstMWI GCNNNNNNNGC 2 cut(s) 330, 335
BstNI CCWGG 2 cut(s) 188, 291
BstSCI CCNGG 2 cut(s) 186, 289
BstSLI GKGCMC 1 cut(s) 331
BstUI CGCG 2 cut(s) 65, 333
BstV1I GCAGC 1 cut(s) 247
BstV2I GAAGAC 1 cut(s) 351
BsuRI GGCC 1 cut(s) 276
BtgZI GCGATG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 362
BtsCI GGATG 2 cut(s) 163, 286
BtsI GCAGTG 2 cut(s) 41, 316
BtsIMutI CAGTG 2 cut(s) 41, 316
Cac8I GCNNGC 2 cut(s) 181, 331
CfoI GCGC 1 cut(s) 67
CviAII CATG 2 cut(s) 11, 95
CviJI RGCY 7 cut(s) 8, 59, 136, 191, 218, 276, 297
CviKI_1 RGCY 7 cut(s) 8, 59, 136, 191, 218, 276, 297
DdeI CTNAG 2 cut(s) 132, 339
DpnI GATC 3 cut(s) 123, 153, 306
DpnII GATC 3 cut(s) 121, 151, 304
EaeI YGGCCR 1 cut(s) 274
Eam1104I CTCTTC 3 cut(s) 132, 198, 234
EarI CTCTTC 3 cut(s) 132, 198, 234
Ecl136II GAGCTC 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 61
Eco53kI GAGCTC 1 cut(s) 59
EcoICRI GAGCTC 1 cut(s) 59
EcoRII CCWGG 2 cut(s) 186, 289
EcoT38I GRGCYC 1 cut(s) 61
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 2 cut(s) 14, 98
FaiI YATR 2 cut(s) 12, 96
FatI CATG 2 cut(s) 10, 94
Fnu4HI GCNGC 4 cut(s) 82, 184, 219, 236
FokI GGATG 2 cut(s) 150, 273
FriOI GRGCYC 1 cut(s) 61
Fsp4HI GCNGC 4 cut(s) 82, 184, 219, 236
GlaI GCGC 1 cut(s) 66
GluI GCNGC 4 cut(s) 82, 184, 219, 236
HaeIII GGCC 1 cut(s) 276
HhaI GCGC 1 cut(s) 67
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 2 cut(s) 14, 98
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 210, 268
Hpy188III TCNNGA 3 cut(s) 119, 173, 245
Hpy8I GTNNAC 1 cut(s) 329
Hpy99I CGWCG 6 cut(s) 54, 57, 114, 246, 275, 366
HpyAV CCTTC 1 cut(s) 44
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 2 cut(s) 270, 361
HpyCH4V TGCA 2 cut(s) 329, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 330, 335
HpyF3I CTNAG 2 cut(s) 132, 339
HpySE526I ACGT 2 cut(s) 270, 361
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 2 cut(s) 14, 98
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 3 cut(s) 121, 151, 304
LguI GCTCTTC 1 cut(s) 198
LmnI GCTCC 1 cut(s) 30
LpnPI CCDG 7 cut(s) 128, 132, 162, 173, 200, 276, 303
Lsp1109I GCAGC 1 cut(s) 247
LweI GCATC 2 cut(s) 166, 325
MaeII ACGT 2 cut(s) 270, 361
MalI GATC 3 cut(s) 123, 153, 306
MbiI CCGCTC 2 cut(s) 25, 221
MboI GATC 3 cut(s) 121, 151, 304
MboII GAAGA 5 cut(s) 119, 185, 221, 260, 356
MhlI GDGCHC 2 cut(s) 61, 331
MslI CAYNNNNRTG 3 cut(s) 174, 243, 291
MspR9I CCNGG 2 cut(s) 188, 291
MvaI CCWGG 2 cut(s) 188, 291
MvnI CGCG 2 cut(s) 65, 333
MwoI GCNNNNNNNGC 2 cut(s) 330, 335
NdeII GATC 3 cut(s) 121, 151, 304
NlaIII CATG 2 cut(s) 14, 98
NlaIV GGNNCC 1 cut(s) 147
OliI CACNNNNGTG 1 cut(s) 243
PciSI GCTCTTC 1 cut(s) 198
PcsI WCGNNNNNNNCGW 3 cut(s) 109, 220, 238
PkrI GCNGC 4 cut(s) 83, 185, 220, 237
Psp124BI GAGCTC 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 186, 289
PspGI CCWGG 2 cut(s) 186, 289
PspN4I GGNNCC 1 cut(s) 147
RseI CAYNNNNRTG 3 cut(s) 174, 243, 291
SacI GAGCTC 1 cut(s) 61
SapI GCTCTTC 1 cut(s) 198
SatI GCNGC 4 cut(s) 82, 184, 219, 236
Sau3AI GATC 3 cut(s) 121, 151, 304
ScrFI CCNGG 2 cut(s) 188, 291
SduI GDGCHC 2 cut(s) 61, 331
SetI ASST 6 cut(s) 10, 36, 61, 151, 273, 364
SfaNI GCATC 2 cut(s) 166, 325
SmiMI CAYNNNNRTG 3 cut(s) 174, 243, 291
SsiI CCGC 7 cut(s) 23, 71, 82, 92, 184, 219, 324
SstI GAGCTC 1 cut(s) 61
StyD4I CCNGG 2 cut(s) 186, 289
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 2 cut(s) 273, 364
TaqI TCGA 3 cut(s) 16, 49, 364
TauI GCSGC 3 cut(s) 84, 186, 221
TscAI CASTG 2 cut(s) 48, 316
TseI GCWGC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 111, 297
TspRI CASTG 2 cut(s) 48, 316
VneI GTGCAC 1 cut(s) 327
ZraI GACGTC 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.