Rh3CG029400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0019652
Physical Location & Seq
Forward (+)
2014605 .. 2015024
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG029400.1

Sequence Viewer

Length: 420 bp
ATGGTCAGAGCTTTTCTCCCCCGCCGCCTTCTCCGTCCCCCACAGCTACGCCGACGCCATGAGCCGCGTGAAGCACAACCTCAGCTACTTCCGTCTCAACTACGCCATGGTCGTGCTCGTCATCGTCTTCCTCAGCCTCCTATGGCACCCGGTCTCCATGATCGTCTTCTTGATCATCCTCATCTACTGGATCTTCGGTTACTTCTCACGCGCCCCCGGCCCCGTCGTCCTCTTCAACCGGAGCTTCGACGACGGCGCCGTCCTCTTCGCCCTCAGCCTCCTCACCGTGGTGGCGCTTGTGCTCACGCGCGTGGGGCTGAACGTGTTGGTCTCTCTGGTCGTCGCCGTGGTCGTTGTGGGCCTCCACGCCGCGTTTCGGGTCACAGAAGACCTGTATTCCGATCCGGAGAGCGCTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

16.34

Weight (kDa)

12.0

Isoelectric Point (pI)

111.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019652)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12580
pyrus_communis pycom17g18170
rosa_samantha Rh3AG030100 Rh3BG030500 Rh3CG029400 Rh6AG313700 Rh6BG321200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 258
AccB1I GGYRCC 2 cut(s) 145, 255
AccII CGCG 5 cut(s) 67, 211, 308, 310, 372
AccIII TCCGGA 1 cut(s) 404
AciI CCGC 4 cut(s) 22, 25, 65, 370
AclWI GGATC 2 cut(s) 198, 396
AcyI GRCGYC 2 cut(s) 55, 256
AfeI AGCGCT 1 cut(s) 413
AfiI CCNNNNNNNGG 2 cut(s) 287, 376
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 1 cut(s) 236
AleI CACNNNNGTG 2 cut(s) 288, 309
AluBI AGCT 4 cut(s) 11, 46, 85, 244
AluI AGCT 4 cut(s) 11, 46, 85, 244
Alw21I GWGCWC 2 cut(s) 118, 304
Alw26I GTCTC 3 cut(s) 99, 158, 335
AlwI GGATC 2 cut(s) 198, 396
Aor13HI TCCGGA 1 cut(s) 404
Aor51HI AGCGCT 1 cut(s) 413
AoxI GGCC 2 cut(s) 218, 359
ApeKI GCWGC 1 cut(s) 414
AspLEI GCGC 5 cut(s) 213, 258, 296, 310, 414
AspS9I GGNCC 2 cut(s) 219, 359
AsuC2I CCSGG 2 cut(s) 150, 217
AsuHPI GGTGA 1 cut(s) 275
BanI GGYRCC 2 cut(s) 145, 255
BbsI GAAGAC 3 cut(s) 119, 158, 394
Bbv12I GWGCWC 2 cut(s) 118, 304
BbvCI CCTCAGC 3 cut(s) 81, 132, 273
BbvI GCAGC 1 cut(s) 401
BceAI ACGGC 3 cut(s) 243, 269, 330
BclI TGATCA 1 cut(s) 172
BcnI CCSGG 2 cut(s) 150, 217
BcoDI GTCTC 3 cut(s) 99, 158, 335
BfoI RGCGCY 3 cut(s) 259, 297, 415
BisI GCNGC 4 cut(s) 25, 65, 370, 415
BlsI GCNGC 4 cut(s) 26, 66, 371, 416
Bme1390I CCNGG 2 cut(s) 150, 217
BmgT120I GGNCC 2 cut(s) 219, 359
BmiI GGNNCC 3 cut(s) 147, 221, 257
BmrFI CCNGG 2 cut(s) 150, 217
BpiI GAAGAC 3 cut(s) 119, 158, 394
BplI GAGNNNNNCTC 1 cut(s) 32
Bpu10I CCTNAGC 3 cut(s) 81, 132, 273
BpuMI CCSGG 2 cut(s) 150, 217
BsaHI GRCGYC 2 cut(s) 55, 256
BsaI GGTCTC 2 cut(s) 158, 335
BsaJI CCNNGG 4 cut(s) 106, 215, 286, 346
BsaWI WCCGGW 2 cut(s) 238, 404
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 376
Bse1I ACTGG 1 cut(s) 192
BseAI TCCGGA 1 cut(s) 404
BseDI CCNNGG 4 cut(s) 106, 215, 286, 346
BseGI GGATG 1 cut(s) 175
BseLI CCNNNNNNNGG 2 cut(s) 287, 376
BseMII CTCAG 3 cut(s) 95, 146, 287
BseNI ACTGG 1 cut(s) 192
BseRI GAGGAG 1 cut(s) 270
BseXI GCAGC 1 cut(s) 401
Bsh1236I CGCG 5 cut(s) 67, 211, 308, 310, 372
BshFI GGCC 2 cut(s) 220, 361
BshNI GGYRCC 2 cut(s) 145, 255
BsiHKAI GWGCWC 2 cut(s) 118, 304
BsiSI CCGG 4 cut(s) 150, 217, 239, 405
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 287, 376
BsmAI GTCTC 3 cut(s) 99, 158, 335
BsmBI CGTCTC 1 cut(s) 99
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 2 cut(s) 220, 361
Bso31I GGTCTC 2 cut(s) 158, 335
Bsp1286I GDGCHC 2 cut(s) 118, 304
Bsp13I TCCGGA 1 cut(s) 404
Bsp143I GATC 4 cut(s) 160, 172, 190, 401
Bsp19I CCATGG 1 cut(s) 106
BspACI CCGC 4 cut(s) 22, 25, 65, 370
BspANI GGCC 2 cut(s) 220, 361
BspCNI CTCAG 3 cut(s) 94, 145, 286
BspEI TCCGGA 1 cut(s) 404
BspFNI CGCG 5 cut(s) 67, 211, 308, 310, 372
BspLI GGNNCC 3 cut(s) 147, 221, 257
BspPI GGATC 2 cut(s) 198, 396
BspT107I GGYRCC 2 cut(s) 145, 255
BspTNI GGTCTC 2 cut(s) 158, 335
BsrI ACTGG 1 cut(s) 192
BssECI CCNNGG 4 cut(s) 106, 215, 286, 346
BssMI GATC 4 cut(s) 160, 172, 190, 401
BssNI GRCGYC 2 cut(s) 55, 256
BssT1I CCWWGG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 287
Bst6I CTCTTC 2 cut(s) 237, 270
BstACI GRCGYC 2 cut(s) 55, 256
BstDEI CTNAG 3 cut(s) 81, 132, 273
BstDSI CCRYGG 3 cut(s) 106, 286, 346
BstF5I GGATG 1 cut(s) 175
BstFNI CGCG 5 cut(s) 67, 211, 308, 310, 372
BstH2I RGCGCY 3 cut(s) 259, 297, 415
BstHHI GCGC 5 cut(s) 213, 258, 296, 310, 414
BstKTI GATC 4 cut(s) 163, 175, 193, 404
BstMAI GTCTC 3 cut(s) 99, 158, 335
BstMBI GATC 4 cut(s) 160, 172, 190, 401
BstMWI GCNNNNNNNGC 2 cut(s) 217, 314
BstSCI CCNGG 2 cut(s) 148, 215
BstUI CGCG 5 cut(s) 67, 211, 308, 310, 372
BstV1I GCAGC 1 cut(s) 401
BstV2I GAAGAC 3 cut(s) 119, 158, 394
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 2 cut(s) 220, 361
BtgI CCRYGG 3 cut(s) 106, 286, 346
BtsCI GGATG 1 cut(s) 175
CfoI GCGC 5 cut(s) 213, 258, 296, 310, 414
Cfr13I GGNCC 2 cut(s) 219, 359
CseI GACGC 1 cut(s) 63
CviAII CATG 3 cut(s) 59, 107, 158
DdeI CTNAG 3 cut(s) 81, 132, 273
DinI GGCGCC 1 cut(s) 257
DpnI GATC 4 cut(s) 162, 174, 192, 403
DpnII GATC 4 cut(s) 160, 172, 190, 401
DrdI GACNNNNNNGTC 1 cut(s) 258
DseDI GACNNNNNNGTC 1 cut(s) 258
Eam1104I CTCTTC 2 cut(s) 237, 270
EarI CTCTTC 2 cut(s) 237, 270
Eco130I CCWWGG 1 cut(s) 106
Eco31I GGTCTC 2 cut(s) 158, 335
Eco47III AGCGCT 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 106
EgeI GGCGCC 1 cut(s) 257
EheI GGCGCC 1 cut(s) 257
ErhI CCWWGG 1 cut(s) 106
Esp3I CGTCTC 1 cut(s) 99
FaeI CATG 3 cut(s) 62, 110, 161
FaiI YATR 4 cut(s) 60, 108, 143, 159
FaqI GGGAC 1 cut(s) 21
FatI CATG 3 cut(s) 58, 106, 157
FauI CCCGC 1 cut(s) 29
FbaI TGATCA 1 cut(s) 172
Fnu4HI GCNGC 4 cut(s) 25, 65, 370, 415
FokI GGATG 1 cut(s) 162
Fsp4HI GCNGC 4 cut(s) 25, 65, 370, 415
GlaI GCGC 5 cut(s) 212, 257, 295, 309, 413
GluI GCNGC 4 cut(s) 25, 65, 370, 415
HaeII RGCGCY 3 cut(s) 259, 297, 415
HaeIII GGCC 2 cut(s) 220, 361
HapII CCGG 4 cut(s) 150, 217, 239, 405
HgaI GACGC 1 cut(s) 63
HhaI GCGC 5 cut(s) 213, 258, 296, 310, 414
Hin1I GRCGYC 2 cut(s) 55, 256
Hin1II CATG 3 cut(s) 62, 110, 161
Hin6I GCGC 5 cut(s) 211, 256, 294, 308, 412
HinP1I GCGC 5 cut(s) 211, 256, 294, 308, 412
HpaII CCGG 4 cut(s) 150, 217, 239, 405
HphI GGTGA 1 cut(s) 275
Hpy188I TCNGA 2 cut(s) 8, 401
Hpy188III TCNNGA 2 cut(s) 170, 405
Hpy99I CGWCG 5 cut(s) 57, 228, 252, 255, 345
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 314
HpyF3I CTNAG 3 cut(s) 81, 132, 273
HpySE526I ACGT 1 cut(s) 322
Hsp92I GRCGYC 2 cut(s) 55, 256
Hsp92II CATG 3 cut(s) 62, 110, 161
HspAI GCGC 5 cut(s) 211, 256, 294, 308, 412
KasI GGCGCC 1 cut(s) 255
Kpn2I TCCGGA 1 cut(s) 404
Ksp22I TGATCA 1 cut(s) 172
Kzo9I GATC 4 cut(s) 160, 172, 190, 401
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 6 cut(s) 163, 173, 230, 252, 321, 405
Lsp1109I GCAGC 1 cut(s) 401
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 2 cut(s) 198, 380
MalI GATC 4 cut(s) 162, 174, 192, 403
MboI GATC 4 cut(s) 160, 172, 190, 401
MboII GAAGA 6 cut(s) 119, 158, 185, 224, 257, 399
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 118, 304
Mly113I GGCGCC 1 cut(s) 256
MroI TCCGGA 1 cut(s) 404
MslI CAYNNNNRTG 3 cut(s) 111, 288, 309
MspI CCGG 4 cut(s) 150, 217, 239, 405
MspR9I CCNGG 2 cut(s) 150, 217
MvnI CGCG 5 cut(s) 67, 211, 308, 310, 372
MwoI GCNNNNNNNGC 2 cut(s) 217, 314
NarI GGCGCC 1 cut(s) 256
NciI CCSGG 2 cut(s) 150, 217
NcoI CCATGG 1 cut(s) 106
NdeII GATC 4 cut(s) 160, 172, 190, 401
NlaIII CATG 3 cut(s) 62, 110, 161
NlaIV GGNNCC 3 cut(s) 147, 221, 257
NmuCI GTSAC 1 cut(s) 380
OliI CACNNNNGTG 2 cut(s) 288, 309
PcsI WCGNNNNNNNCGW 3 cut(s) 109, 256, 349
PkrI GCNGC 4 cut(s) 26, 66, 371, 416
PluTI GGCGCC 1 cut(s) 259
PspN4I GGNNCC 3 cut(s) 147, 221, 257
PspPI GGNCC 2 cut(s) 219, 359
PsuI RGATCY 1 cut(s) 190
RseI CAYNNNNRTG 3 cut(s) 111, 288, 309
SatI GCNGC 4 cut(s) 25, 65, 370, 415
Sau3AI GATC 4 cut(s) 160, 172, 190, 401
Sau96I GGNCC 2 cut(s) 219, 359
ScrFI CCNGG 2 cut(s) 150, 217
SduI GDGCHC 2 cut(s) 118, 304
SetI ASST 7 cut(s) 13, 48, 82, 87, 246, 325, 394
SfoI GGCGCC 1 cut(s) 257
SmiMI CAYNNNNRTG 3 cut(s) 111, 288, 309
SsiI CCGC 4 cut(s) 22, 25, 65, 370
SspDI GGCGCC 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 148, 215
StyI CCWWGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 1 cut(s) 325
TaqI TCGA 1 cut(s) 247
TauI GCSGC 3 cut(s) 27, 67, 372
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 1 cut(s) 414
Tsp45I GTSAC 1 cut(s) 380
TspGWI ACGGA 2 cut(s) 23, 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.