Rh6BG321200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0019652
Physical Location & Seq
Forward (+)
55221892 .. 55222278
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG321200.1

Sequence Viewer

Length: 387 bp
ATGGCTCGAGCTGGTCCAGCCCTTCTCCAGCTTCACGCGCCCCGACTCTTTTGGCATGGCCACGCTCCGAATCAAGAGCAACCTCAGCCACTTCCGGGTCAACTACGCCATGGCCGTCCTCTTCATCCTCTTCCTCAGCCTCCTCTGGCACCCCGTCTCCCTCATCGTCTTCCTCCTCGTCTTCGTCGCCTGGTTCTTCCTCTACTTCTTCCGCGACGCTCCCCTCGTCCTCTTCAGTTGGGTCGTCGACGACCGCATCGTCCTCGCCGTCCTCGCCGTCGTCACCGTCGTCGCCCTCGTCTTCACCAGCGTCTGGTTGAACGTCCTCGTCTCCATTCTCGTTGGGATCGCGCTCGTGCTGTTACACGCGGCGTTTCGGGGCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

15.23

Weight (kDa)

12.0

Isoelectric Point (pI)

106.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019652)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g12580
pyrus_communis pycom17g18170
rosa_samantha Rh3AG030100 Rh3BG030500 Rh3CG029400 Rh6AG313700 Rh6BG321200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 148
AccB7I CCANNNNNTGG 1 cut(s) 313
AccI GTMKAC 1 cut(s) 247
AccII CGCG 4 cut(s) 38, 214, 351, 369
AciI CCGC 3 cut(s) 212, 254, 369
AclWI GGATC 1 cut(s) 354
AcoI YGGCCR 2 cut(s) 58, 112
AcuI CTGAAG 1 cut(s) 218
AfiI CCNNNNNNNGG 2 cut(s) 95, 313
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 2 cut(s) 11, 31
AluI AGCT 2 cut(s) 11, 31
Alw26I GTCTC 2 cut(s) 161, 335
AlwI GGATC 1 cut(s) 354
AlwNI CAGNNNCTG 1 cut(s) 313
Ama87I CYCGRG 1 cut(s) 6
AoxI GGCC 2 cut(s) 58, 112
AspLEI GCGC 2 cut(s) 40, 353
AspS9I GGNCC 1 cut(s) 14
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 2 cut(s) 275, 296
AvaI CYCGRG 1 cut(s) 6
AvaII GGWCC 1 cut(s) 14
BaeGI GKGCMC 1 cut(s) 384
BalI TGGCCA 1 cut(s) 60
BanI GGYRCC 1 cut(s) 148
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 3 cut(s) 161, 173, 293
BbvCI CCTCAGC 2 cut(s) 84, 135
BceAI ACGGC 3 cut(s) 99, 252, 261
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 1 cut(s) 191
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 161, 335
BisI GCNGC 1 cut(s) 370
BlsI GCNGC 1 cut(s) 371
Bme1390I CCNGG 2 cut(s) 96, 191
Bme18I GGWCC 1 cut(s) 14
BmeT110I CYCGRG 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 2 cut(s) 96, 191
BmsI GCATC 1 cut(s) 265
BpiI GAAGAC 3 cut(s) 161, 173, 293
BpmI CTGGAG 1 cut(s) 11
Bpu10I CCTNAGC 2 cut(s) 84, 135
BpuMI CCSGG 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 313
BseBI CCWGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 95, 313
BseMII CTCAG 2 cut(s) 98, 149
BseRI GAGGAG 2 cut(s) 132, 165
BseSI GKGCMC 1 cut(s) 384
Bsh1236I CGCG 4 cut(s) 38, 214, 351, 369
Bsh1285I CGRYCG 1 cut(s) 254
BshFI GGCC 2 cut(s) 60, 114
BshNI GGYRCC 1 cut(s) 148
BsiEI CGRYCG 1 cut(s) 254
BsiHKCI CYCGRG 1 cut(s) 6
BsiSI CCGG 1 cut(s) 95
BslI CCNNNNNNNGG 2 cut(s) 95, 313
BsmAI GTCTC 2 cut(s) 161, 335
BsmBI CGTCTC 2 cut(s) 161, 335
BsnI GGCC 2 cut(s) 60, 114
BsoBI CYCGRG 1 cut(s) 6
Bsp1286I GDGCHC 1 cut(s) 384
Bsp143I GATC 1 cut(s) 346
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 3 cut(s) 212, 254, 369
BspANI GGCC 2 cut(s) 60, 114
BspCNI CTCAG 2 cut(s) 97, 148
BspFNI CGCG 4 cut(s) 38, 214, 351, 369
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 354
BspT107I GGYRCC 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 346
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 287
Bst6I CTCTTC 3 cut(s) 126, 135, 237
BstDEI CTNAG 2 cut(s) 84, 135
BstDSI CCRYGG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 4 cut(s) 38, 214, 351, 369
BstHHI GCGC 2 cut(s) 40, 353
BstKTI GATC 1 cut(s) 349
BstMAI GTCTC 2 cut(s) 161, 335
BstMBI GATC 1 cut(s) 346
BstMCI CGRYCG 1 cut(s) 254
BstMWI GCNNNNNNNGC 4 cut(s) 17, 37, 85, 273
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 2 cut(s) 94, 189
BstSLI GKGCMC 1 cut(s) 384
BstUI CGCG 4 cut(s) 38, 214, 351, 369
BstV2I GAAGAC 3 cut(s) 161, 173, 293
BsuRI GGCC 2 cut(s) 60, 114
BtgI CCRYGG 1 cut(s) 109
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 382
CaiI CAGNNNCTG 1 cut(s) 313
CfoI GCGC 2 cut(s) 40, 353
Cfr13I GGNCC 1 cut(s) 14
CseI GACGC 2 cut(s) 225, 299
CviAII CATG 2 cut(s) 56, 110
CviJI RGCY 8 cut(s) 5, 11, 20, 31, 60, 88, 114, 139
CviKI_1 RGCY 8 cut(s) 5, 11, 20, 31, 60, 88, 114, 139
DdeI CTNAG 2 cut(s) 84, 135
DpnI GATC 1 cut(s) 348
DpnII GATC 1 cut(s) 346
DrdI GACNNNNNNGTC 1 cut(s) 258
DseDI GACNNNNNNGTC 1 cut(s) 258
EaeI YGGCCR 2 cut(s) 58, 112
Eam1104I CTCTTC 3 cut(s) 126, 135, 237
EarI CTCTTC 3 cut(s) 126, 135, 237
Eco130I CCWWGG 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 14
Eco57I CTGAAG 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
Esp3I CGTCTC 2 cut(s) 161, 335
FaeI CATG 2 cut(s) 59, 113
FaiI YATR 2 cut(s) 57, 111
FatI CATG 2 cut(s) 55, 109
FblI GTMKAC 1 cut(s) 247
Fnu4HI GCNGC 1 cut(s) 370
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 370
GlaI GCGC 2 cut(s) 39, 352
GluI GCNGC 1 cut(s) 370
GsuI CTGGAG 1 cut(s) 11
HaeIII GGCC 2 cut(s) 60, 114
HapII CCGG 1 cut(s) 95
HgaI GACGC 2 cut(s) 225, 299
HhaI GCGC 2 cut(s) 40, 353
Hin1II CATG 2 cut(s) 59, 113
Hin6I GCGC 2 cut(s) 38, 351
HinP1I GCGC 2 cut(s) 38, 351
HincII GTYRAC 2 cut(s) 101, 248
HindII GTYRAC 2 cut(s) 101, 248
HinfI GANTC 2 cut(s) 45, 70
HpaII CCGG 1 cut(s) 95
HphI GGTGA 2 cut(s) 275, 296
Hpy166II GTNNAC 2 cut(s) 101, 248
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 2 cut(s) 101, 248
Hpy99I CGWCG 7 cut(s) 189, 219, 249, 252, 282, 291, 294
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 322
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 37, 85, 273
HpyF3I CTNAG 2 cut(s) 84, 135
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 2 cut(s) 59, 113
HspAI GCGC 2 cut(s) 38, 351
Kzo9I GATC 1 cut(s) 346
LmnI GCTCC 2 cut(s) 70, 224
LpnPI CCDG 8 cut(s) 30, 41, 108, 131, 176, 203, 299, 320
LweI GCATC 1 cut(s) 265
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 2 cut(s) 281, 361
MalI GATC 1 cut(s) 348
MboI GATC 1 cut(s) 346
MboII GAAGA 8 cut(s) 113, 122, 161, 173, 188, 200, 224, 293
MhlI GDGCHC 1 cut(s) 384
MlsI TGGCCA 1 cut(s) 60
MluNI TGGCCA 1 cut(s) 60
MlyI GAGTC 1 cut(s) 39
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 60
MspI CCGG 1 cut(s) 95
MspR9I CCNGG 2 cut(s) 96, 191
MvaI CCWGG 1 cut(s) 191
MvnI CGCG 4 cut(s) 38, 214, 351, 369
MwoI GCNNNNNNNGC 4 cut(s) 17, 37, 85, 273
NciI CCSGG 1 cut(s) 96
NcoI CCATGG 1 cut(s) 109
NdeII GATC 1 cut(s) 346
NlaIII CATG 2 cut(s) 59, 113
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 281
PaeR7I CTCGAG 1 cut(s) 6
PcsI WCGNNNNNNNCGW 6 cut(s) 112, 223, 256, 265, 286, 295
PfeI GAWTC 1 cut(s) 70
PflMI CCANNNNNTGG 1 cut(s) 313
PkrI GCNGC 1 cut(s) 371
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 14
PspXI VCTCGAGB 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 313
SalI GTCGAC 1 cut(s) 246
SatI GCNGC 1 cut(s) 370
Sau3AI GATC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 96, 191
SduI GDGCHC 1 cut(s) 384
SetI ASST 4 cut(s) 13, 33, 85, 325
SfaNI GCATC 1 cut(s) 265
Sfr274I CTCGAG 1 cut(s) 6
SgrDI CGTCGACG 1 cut(s) 246
SinI GGWCC 1 cut(s) 14
SlaI CTCGAG 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 6
SmoI CTYRAG 1 cut(s) 6
SsiI CCGC 3 cut(s) 212, 254, 369
StyD4I CCNGG 2 cut(s) 94, 189
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 1 cut(s) 325
TaqI TCGA 2 cut(s) 7, 247
TauI GCSGC 1 cut(s) 372
TfiI GAWTC 1 cut(s) 70
TseFI GTSAC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 281
TspDTI ATGAA 1 cut(s) 113
Van91I CCANNNNNTGG 1 cut(s) 313
VpaK11BI GGWCC 1 cut(s) 14
XhoI CTCGAG 1 cut(s) 6
XmiI GTMKAC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.