FvH4_1g13270

dihydrolipoyllysine-residue acetyltransferase activity

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
7285732 .. 7289104
3373 bp
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UTR
Exon/CDS
Intron
FvH4_1g13270.t2

Sequence Viewer

Length: 252 bp
ATGGAGTCTCCGGCATCGTCTTCAGAAACTCCGGCGGTGAGTTCGTGCCGGCGGAAGAAGAATTTCGGAAGCGGCAGCTTTGTATCGGATTTAAGGTCTCACTTTCATGAGTTCATTTTTGCTTCCATGGATGAACACAGAATATGCTTGGTGGAAACCTTCAAGAAGATGAAGTCAAAATTTTACATAGAAAAAAGTGCTACTGGCCCAAATGAAGGAGAAGGTTCGCTGCCTCTGCAAAACAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

84

Amino Acids

9.29

Weight (kDa)

7.81

Isoelectric Point (pI)

68.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 35, 52, 72
AcsI RAATTY 2 cut(s) 61, 179
AcuI CTGAAG 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 1 cut(s) 78
AluI AGCT 1 cut(s) 78
Alw26I GTCTC 2 cut(s) 12, 102
AoxI GGCC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 75, 229
ApoI RAATTY 2 cut(s) 61, 179
Asp700I GAANNNNTTC 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 12
BbvI GCAGC 2 cut(s) 87, 216
BcoDI GTCTC 2 cut(s) 12, 102
BisI GCNGC 3 cut(s) 73, 76, 230
BlsI GCNGC 3 cut(s) 74, 77, 231
BmgT120I GGNCC 1 cut(s) 206
BmsI GCATC 1 cut(s) 23
BpiI GAAGAC 1 cut(s) 12
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 215
Bse118I RCCGGY 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 1 cut(s) 215
BseNI ACTGG 1 cut(s) 208
BseXI GCAGC 2 cut(s) 87, 216
BshFI GGCC 1 cut(s) 207
BsiSI CCGG 3 cut(s) 11, 32, 49
BslI CCNNNNNNNGG 1 cut(s) 215
BsmAI GTCTC 2 cut(s) 12, 102
BsnI GGCC 1 cut(s) 207
Bso31I GGTCTC 1 cut(s) 102
Bsp19I CCATGG 1 cut(s) 126
BspACI CCGC 3 cut(s) 35, 52, 72
BspANI GGCC 1 cut(s) 207
BspHI TCATGA 1 cut(s) 106
BspTNI GGTCTC 1 cut(s) 102
BsrFI RCCGGY 1 cut(s) 48
BsrI ACTGG 1 cut(s) 208
BssAI RCCGGY 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 50
BstDSI CCRYGG 1 cut(s) 126
BstF5I GGATG 1 cut(s) 136
BstMAI GTCTC 2 cut(s) 12, 102
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstV1I GCAGC 2 cut(s) 87, 216
BstV2I GAAGAC 1 cut(s) 12
BsuRI GGCC 1 cut(s) 207
BtgI CCRYGG 1 cut(s) 126
BtsCI GGATG 1 cut(s) 136
Cac8I GCNNGC 1 cut(s) 50
CciI TCATGA 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 206
CviAII CATG 2 cut(s) 107, 127
CviJI RGCY 2 cut(s) 78, 207
CviKI_1 RGCY 2 cut(s) 78, 207
EciI GGCGGA 1 cut(s) 67
Eco130I CCWWGG 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 102
Eco57I CTGAAG 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 110, 130
FaiI YATR 4 cut(s) 108, 128, 145, 188
FatI CATG 2 cut(s) 106, 126
Fnu4HI GCNGC 3 cut(s) 73, 76, 230
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 3 cut(s) 73, 76, 230
GluI GCNGC 3 cut(s) 73, 76, 230
HaeIII GGCC 1 cut(s) 207
HapII CCGG 3 cut(s) 11, 32, 49
Hin1II CATG 2 cut(s) 110, 130
HinfI GANTC 1 cut(s) 5
HpaII CCGG 3 cut(s) 11, 32, 49
HphI GGTGA 1 cut(s) 49
Hpy188I TCNGA 3 cut(s) 25, 68, 88
Hpy188III TCNNGA 2 cut(s) 107, 163
HpyAV CCTTC 3 cut(s) 169, 209, 215
HpyCH4V TGCA 1 cut(s) 238
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
Hsp92II CATG 2 cut(s) 110, 130
KroI GCCGGC 1 cut(s) 48
KroNI GCCGGC 1 cut(s) 50
LpnPI CCDG 4 cut(s) 24, 45, 62, 189
Lsp1109I GCAGC 2 cut(s) 87, 216
LweI GCATC 1 cut(s) 23
MboII GAAGA 4 cut(s) 12, 67, 70, 178
MluCI AATT 2 cut(s) 61, 179
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 1 cut(s) 243
MroNI GCCGGC 1 cut(s) 48
MroXI GAANNNNTTC 1 cut(s) 62
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 3 cut(s) 11, 32, 49
MwoI GCNNNNNNNGC 1 cut(s) 235
NaeI GCCGGC 1 cut(s) 50
NcoI CCATGG 1 cut(s) 126
NgoMIV GCCGGC 1 cut(s) 48
NlaIII CATG 2 cut(s) 110, 130
PagI TCATGA 1 cut(s) 106
PdiI GCCGGC 1 cut(s) 50
PdmI GAANNNNTTC 1 cut(s) 62
PkrI GCNGC 3 cut(s) 74, 77, 231
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 105
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 3 cut(s) 73, 76, 230
Sau96I GGNCC 1 cut(s) 206
SchI GAGTC 1 cut(s) 14
SetI ASST 4 cut(s) 80, 98, 161, 226
SfaNI GCATC 1 cut(s) 23
SgeI CNNG 9 cut(s) 23, 44, 57, 61, 119, 139, 160, 175, 216
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 2 cut(s) 61, 179
SsiI CCGC 3 cut(s) 35, 52, 72
StyI CCWWGG 1 cut(s) 126
TasI AATT 2 cut(s) 61, 179
TauI GCSGC 1 cut(s) 75
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseI GCWGC 2 cut(s) 75, 229
TspDTI ATGAA 5 cut(s) 95, 103, 147, 185, 228
XapI RAATTY 2 cut(s) 61, 179
XmnI GAANNNNTTC 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.