SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SUS_N | PF24861 | 9 - 121 | 1.9e-46 | Sucrose synthase N-terminal |
| SUS_EPBD | PF24862 | 156 - 243 | 2.7e-33 | Sucrose synthase EPBD domain |
| GT-B_Sucrose_synth | PF00862 | 266 - 554 | 2.8e-170 | Sucrose synthase first GT-B domain |
| Glycos_transf_1 | PF00534 | 567 - 739 | 1.4e-26 | Glycosyl transferases group 1 |
| Glyco_trans_1_4 | PF13692 | 572 - 724 | 3.8e-11 | Glycosyl transferases group 1 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 888, 2124 |
| AccB1I | GGYRCC | 3 cut(s) | 781, 888, 2124 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1315 |
| AccII | CGCG | 3 cut(s) | 13, 741, 1950 |
| AciI | CCGC | 3 cut(s) | 73, 1126, 1497 |
| AclWI | GGATC | 9 cut(s) | 708, 748, 782, 933, 1142, 1544, 1839, 2129, 2158 |
| AcoI | YGGCCR | 1 cut(s) | 1154 |
| AcsI | RAATTY | 2 cut(s) | 594, 819 |
| AcuI | CTGAAG | 3 cut(s) | 189, 236, 1895 |
| AfaI | GTAC | 9 cut(s) | 293, 347, 890, 1067, 1331, 1373, 1441, 2126, 2255 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 278, 517, 899, 1315, 2144 |
| AflIII | ACRYGT | 1 cut(s) | 619 |
| AjnI | CCWGG | 8 cut(s) | 225, 272, 277, 1209, 1446, 1510, 1848, 2223 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 186, 218, 795, 827 |
| AleI | CACNNNNGTG | 1 cut(s) | 1689 |
| Alw21I | GWGCWC | 6 cut(s) | 224, 312, 747, 774, 1301, 1656 |
| Alw26I | GTCTC | 5 cut(s) | 386, 720, 1160, 1520, 2326 |
| Alw44I | GTGCAC | 2 cut(s) | 308, 1297 |
| AlwI | GGATC | 9 cut(s) | 708, 748, 782, 933, 1142, 1544, 1839, 2129, 2158 |
| AoxI | GGCC | 5 cut(s) | 275, 1154, 1260, 2046, 2089 |
| ApaLI | GTGCAC | 2 cut(s) | 308, 1297 |
| ApeKI | GCWGC | 3 cut(s) | 130, 2005, 2156 |
| ApoI | RAATTY | 2 cut(s) | 594, 819 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2044, 2076 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 162 |
| Asp718I | GGTACC | 2 cut(s) | 888, 2124 |
| AspLEI | GCGC | 1 cut(s) | 741 |
| AspS9I | GGNCC | 2 cut(s) | 1741, 2090 |
| AsuC2I | CCSGG | 2 cut(s) | 1575, 2093 |
| AsuHPI | GGTGA | 7 cut(s) | 62, 482, 1426, 1495, 1563, 1973, 2159 |
| AsuII | TTCGAA | 1 cut(s) | 1146 |
| AvaII | GGWCC | 1 cut(s) | 1741 |
| AxyI | CCTNAGG | 1 cut(s) | 38 |
| BaeGI | GKGCMC | 2 cut(s) | 312, 1301 |
| BalI | TGGCCA | 1 cut(s) | 1156 |
| BanI | GGYRCC | 3 cut(s) | 781, 888, 2124 |
| BanII | GRGCYC | 2 cut(s) | 774, 1656 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 338, 370, 1313, 1345, 1453, 1485 |
| BbsI | GAAGAC | 1 cut(s) | 1328 |
| Bbv12I | GWGCWC | 6 cut(s) | 224, 312, 747, 774, 1301, 1656 |
| BbvI | GCAGC | 3 cut(s) | 142, 2017, 2143 |
| BccI | CCATC | 3 cut(s) | 144, 368, 1920 |
| BceAI | ACGGC | 4 cut(s) | 9, 1013, 2128, 2331 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 540, 574, 1166, 1200 |
| BciT130I | CCWGG | 8 cut(s) | 227, 274, 279, 1211, 1448, 1512, 1850, 2225 |
| BclI | TGATCA | 1 cut(s) | 843 |
| BcnI | CCSGG | 2 cut(s) | 1575, 2093 |
| BcoDI | GTCTC | 5 cut(s) | 386, 720, 1160, 1520, 2326 |
| BfaI | CTAG | 4 cut(s) | 800, 980, 1163, 1361 |
| BfmI | CTRYAG | 2 cut(s) | 1240, 1660 |
| BglII | AGATCT | 1 cut(s) | 81 |
| BisI | GCNGC | 3 cut(s) | 131, 2006, 2157 |
| BlpI | GCTNAGC | 1 cut(s) | 1869 |
| BlsI | GCNGC | 3 cut(s) | 132, 2007, 2158 |
| BmcAI | AGTACT | 1 cut(s) | 347 |
| Bme18I | GGWCC | 1 cut(s) | 1741 |
| BmgT120I | GGNCC | 2 cut(s) | 1741, 2090 |
| BmiI | GGNNCC | 4 cut(s) | 783, 890, 1016, 2126 |
| BmrI | ACTGGG | 2 cut(s) | 1770, 2218 |
| BmsI | GCATC | 3 cut(s) | 570, 942, 1015 |
| BmuI | ACTGGG | 2 cut(s) | 1770, 2218 |
| BpiI | GAAGAC | 1 cut(s) | 1328 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1276, 1308 |
| BpmI | CTGGAG | 2 cut(s) | 300, 2316 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1796, 2412 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1869 |
| Bpu14I | TTCGAA | 1 cut(s) | 1146 |
| BpuEI | CTTGAG | 6 cut(s) | 560, 797, 1076, 1123, 2360, 2360 |
| BpuMI | CCSGG | 2 cut(s) | 1575, 2093 |
| BsaI | GGTCTC | 1 cut(s) | 1520 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1986, 2016 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 278, 517, 899, 1315, 2144 |
| Bse1I | ACTGG | 9 cut(s) | 651, 904, 1355, 1387, 1437, 1715, 1765, 2213, 2299 |
| Bse21I | CCTNAGG | 1 cut(s) | 38 |
| Bse3DI | GCAATG | 3 cut(s) | 82, 1302, 1977 |
| BseBI | CCWGG | 8 cut(s) | 227, 274, 279, 1211, 1448, 1512, 1850, 2225 |
| BseGI | GGATG | 3 cut(s) | 58, 987, 1186 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 278, 517, 899, 1315, 2144 |
| BseMI | GCAATG | 3 cut(s) | 82, 1302, 1977 |
| BseNI | ACTGG | 9 cut(s) | 651, 904, 1355, 1387, 1437, 1715, 1765, 2213, 2299 |
| BseRI | GAGGAG | 6 cut(s) | 341, 377, 752, 843, 1685, 1874 |
| BseSI | GKGCMC | 2 cut(s) | 312, 1301 |
| BseXI | GCAGC | 3 cut(s) | 142, 2017, 2143 |
| BseYI | CCCAGC | 2 cut(s) | 734, 1826 |
| BsgI | GTGCAG | 1 cut(s) | 2024 |
| Bsh1236I | CGCG | 3 cut(s) | 13, 741, 1950 |
| BshFI | GGCC | 5 cut(s) | 277, 1156, 1262, 2048, 2091 |
| BshNI | GGYRCC | 3 cut(s) | 781, 888, 2124 |
| BsiHKAI | GWGCWC | 6 cut(s) | 224, 312, 747, 774, 1301, 1656 |
| BsiSI | CCGG | 2 cut(s) | 1574, 2093 |
| BslFI | GGGAC | 3 cut(s) | 255, 1831, 2225 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 278, 517, 899, 1315, 2144 |
| BsmAI | GTCTC | 5 cut(s) | 386, 720, 1160, 1520, 2326 |
| BsmFI | GGGAC | 3 cut(s) | 255, 1831, 2225 |
| BsmI | GAATGC | 2 cut(s) | 613, 996 |
| BsnI | GGCC | 5 cut(s) | 277, 1156, 1262, 2048, 2091 |
| Bso31I | GGTCTC | 1 cut(s) | 1520 |
| Bsp119I | TTCGAA | 1 cut(s) | 1146 |
| Bsp1286I | GDGCHC | 6 cut(s) | 224, 312, 747, 774, 1301, 1656 |
| Bsp1407I | TGTACA | 1 cut(s) | 1065 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1869 |
| Bsp19I | CCATGG | 2 cut(s) | 248, 825 |
| BspACI | CCGC | 3 cut(s) | 73, 1126, 1497 |
| BspANI | GGCC | 5 cut(s) | 277, 1156, 1262, 2048, 2091 |
| BspFNI | CGCG | 3 cut(s) | 13, 741, 1950 |
| BspHI | TCATGA | 1 cut(s) | 846 |
| BspLI | GGNNCC | 4 cut(s) | 783, 890, 1016, 2126 |
| BspPI | GGATC | 9 cut(s) | 708, 748, 782, 933, 1142, 1544, 1839, 2129, 2158 |
| BspQI | GCTCTTC | 3 cut(s) | 212, 512, 1644 |
| BspT104I | TTCGAA | 1 cut(s) | 1146 |
| BspT107I | GGYRCC | 3 cut(s) | 781, 888, 2124 |
| BspTNI | GGTCTC | 1 cut(s) | 1520 |
| BsrDI | GCAATG | 3 cut(s) | 82, 1302, 1977 |
| BsrGI | TGTACA | 1 cut(s) | 1065 |
| BsrI | ACTGG | 9 cut(s) | 651, 904, 1355, 1387, 1437, 1715, 1765, 2213, 2299 |
| BssT1I | CCWWGG | 4 cut(s) | 111, 248, 811, 825 |
| Bst2UI | CCWGG | 8 cut(s) | 227, 274, 279, 1211, 1448, 1512, 1850, 2225 |
| Bst6I | CTCTTC | 4 cut(s) | 212, 512, 1644, 1727 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 535 |
| BstAUI | TGTACA | 1 cut(s) | 1065 |
| BstBI | TTCGAA | 1 cut(s) | 1146 |
| BstC8I | GCNNGC | 7 cut(s) | 175, 527, 743, 1217, 2010, 2154, 2391 |
| BstDSI | CCRYGG | 3 cut(s) | 248, 825, 2143 |
| BstF5I | GGATG | 3 cut(s) | 58, 987, 1186 |
| BstFNI | CGCG | 3 cut(s) | 13, 741, 1950 |
| BstHHI | GCGC | 1 cut(s) | 741 |
| BstMAI | GTCTC | 5 cut(s) | 386, 720, 1160, 1520, 2326 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 139, 535, 567, 1801, 1915, 2088, 2343 |
| BstNI | CCWGG | 8 cut(s) | 227, 274, 279, 1211, 1448, 1512, 1850, 2225 |
| BstNSI | RCATGY | 3 cut(s) | 529, 623, 2321 |
| BstSFI | CTRYAG | 2 cut(s) | 1240, 1660 |
| BstSLI | GKGCMC | 2 cut(s) | 312, 1301 |
| BstUI | CGCG | 3 cut(s) | 13, 741, 1950 |
| BstV1I | GCAGC | 3 cut(s) | 142, 2017, 2143 |
| BstV2I | GAAGAC | 1 cut(s) | 1328 |
| BstX2I | RGATCY | 4 cut(s) | 81, 700, 1134, 2163 |
| BstYI | RGATCY | 4 cut(s) | 81, 700, 1134, 2163 |
| Bsu36I | CCTNAGG | 1 cut(s) | 38 |
| BsuRI | GGCC | 5 cut(s) | 277, 1156, 1262, 2048, 2091 |
| BtgI | CCRYGG | 3 cut(s) | 248, 825, 2143 |
| BtsCI | GGATG | 3 cut(s) | 58, 987, 1186 |
| BtsI | GCAGTG | 2 cut(s) | 533, 556 |
| BtsIMutI | CAGTG | 8 cut(s) | 533, 556, 897, 1249, 1301, 1419, 1758, 2206 |
| Cac8I | GCNNGC | 7 cut(s) | 175, 527, 743, 1217, 2010, 2154, 2391 |
| CciI | TCATGA | 1 cut(s) | 846 |
| CfoI | GCGC | 1 cut(s) | 741 |
| Cfr13I | GGNCC | 2 cut(s) | 1741, 2090 |
| CseI | GACGC | 1 cut(s) | 1040 |
| Csp6I | GTAC | 9 cut(s) | 292, 346, 889, 1066, 1330, 1372, 1440, 2125, 2254 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1364, 1399 |
| CviQI | GTAC | 9 cut(s) | 292, 346, 889, 1066, 1330, 1372, 1440, 2125, 2254 |
| EaeI | YGGCCR | 1 cut(s) | 1154 |
| Eam1104I | CTCTTC | 4 cut(s) | 212, 512, 1644, 1727 |
| EarI | CTCTTC | 4 cut(s) | 212, 512, 1644, 1727 |
| Ecl136II | GAGCTC | 2 cut(s) | 772, 1654 |
| Eco130I | CCWWGG | 4 cut(s) | 111, 248, 811, 825 |
| Eco147I | AGGCCT | 1 cut(s) | 277 |
| Eco24I | GRGCYC | 2 cut(s) | 774, 1656 |
| Eco31I | GGTCTC | 1 cut(s) | 1520 |
| Eco32I | GATATC | 1 cut(s) | 985 |
| Eco47I | GGWCC | 1 cut(s) | 1741 |
| Eco53kI | GAGCTC | 2 cut(s) | 772, 1654 |
| Eco57I | CTGAAG | 3 cut(s) | 189, 236, 1895 |
| Eco81I | CCTNAGG | 1 cut(s) | 38 |
| EcoICRI | GAGCTC | 2 cut(s) | 772, 1654 |
| EcoRI | GAATTC | 2 cut(s) | 594, 819 |
| EcoRII | CCWGG | 8 cut(s) | 225, 272, 277, 1209, 1446, 1510, 1848, 2223 |
| EcoRV | GATATC | 1 cut(s) | 985 |
| EcoT14I | CCWWGG | 4 cut(s) | 111, 248, 811, 825 |
| EcoT38I | GRGCYC | 2 cut(s) | 774, 1656 |
| ErhI | CCWWGG | 4 cut(s) | 111, 248, 811, 825 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 351, 383, 1361, 1393 |
| FaqI | GGGAC | 3 cut(s) | 255, 1831, 2225 |
| FbaI | TGATCA | 1 cut(s) | 843 |
| Fnu4HI | GCNGC | 3 cut(s) | 131, 2006, 2157 |
| FokI | GGATG | 3 cut(s) | 65, 974, 1193 |
| FriOI | GRGCYC | 2 cut(s) | 774, 1656 |
| Fsp4HI | GCNGC | 3 cut(s) | 131, 2006, 2157 |
| FspBI | CTAG | 4 cut(s) | 800, 980, 1163, 1361 |
| GlaI | GCGC | 1 cut(s) | 740 |
| GluI | GCNGC | 3 cut(s) | 131, 2006, 2157 |
| GsaI | CCCAGC | 2 cut(s) | 738, 1830 |
| GsuI | CTGGAG | 2 cut(s) | 300, 2316 |
| HaeIII | GGCC | 5 cut(s) | 277, 1156, 1262, 2048, 2091 |
| HapII | CCGG | 2 cut(s) | 1574, 2093 |
| HgaI | GACGC | 1 cut(s) | 1040 |
| HhaI | GCGC | 1 cut(s) | 741 |
| Hin6I | GCGC | 1 cut(s) | 739 |
| HinP1I | GCGC | 1 cut(s) | 739 |
| HincII | GTYRAC | 3 cut(s) | 1626, 1810, 2173 |
| HindII | GTYRAC | 3 cut(s) | 1626, 1810, 2173 |
| HindIII | AAGCTT | 1 cut(s) | 1793 |
| HinfI | GANTC | 8 cut(s) | 8, 850, 1143, 1337, 1489, 1844, 1945, 2396 |
| HpaI | GTTAAC | 1 cut(s) | 1810 |
| HpaII | CCGG | 2 cut(s) | 1574, 2093 |
| HphI | GGTGA | 7 cut(s) | 62, 482, 1426, 1495, 1563, 1973, 2159 |
| Hpy188III | TCNNGA | 8 cut(s) | 167, 800, 847, 1022, 1055, 1140, 2284, 2311 |
| Hpy99I | CGWCG | 1 cut(s) | 2352 |
| HpyCH4IV | ACGT | 1 cut(s) | 961 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 139, 535, 567, 1801, 1915, 2088, 2343 |
| HpySE526I | ACGT | 1 cut(s) | 961 |
| HspAI | GCGC | 1 cut(s) | 739 |
| KpnI | GGTACC | 2 cut(s) | 892, 2128 |
| Ksp22I | TGATCA | 1 cut(s) | 843 |
| KspAI | GTTAAC | 1 cut(s) | 1810 |
| LguI | GCTCTTC | 3 cut(s) | 212, 512, 1644 |
| LmnI | GCTCC | 7 cut(s) | 364, 769, 777, 1020, 1577, 1801, 1994 |
| Lsp1109I | GCAGC | 3 cut(s) | 142, 2017, 2143 |
| LweI | GCATC | 3 cut(s) | 570, 942, 1015 |
| MaeI | CTAG | 4 cut(s) | 800, 980, 1163, 1361 |
| MaeII | ACGT | 1 cut(s) | 961 |
| MaeIII | GTNAC | 8 cut(s) | 488, 649, 860, 1006, 1244, 1250, 1288, 1490 |
| MflI | RGATCY | 4 cut(s) | 81, 700, 1134, 2163 |
| MhlI | GDGCHC | 6 cut(s) | 224, 312, 747, 774, 1301, 1656 |
| MlsI | TGGCCA | 1 cut(s) | 1156 |
| MluCI | AATT | 7 cut(s) | 162, 185, 404, 594, 819, 1119, 1280 |
| MluNI | TGGCCA | 1 cut(s) | 1156 |
| MlyI | GAGTC | 5 cut(s) | 2, 844, 1498, 1853, 2405 |
| MmeI | TCCRAC | 3 cut(s) | 171, 781, 2349 |
| Mox20I | TGGCCA | 1 cut(s) | 1156 |
| MroXI | GAANNNNTTC | 1 cut(s) | 162 |
| MscI | TGGCCA | 1 cut(s) | 1156 |
| MseI | TTAA | 3 cut(s) | 303, 957, 1809 |
| MslI | CAYNNNNRTG | 3 cut(s) | 75, 1689, 2360 |
| Msp20I | TGGCCA | 1 cut(s) | 1156 |
| MspA1I | CMGCKG | 2 cut(s) | 142, 1397 |
| MspI | CCGG | 2 cut(s) | 1574, 2093 |
| Mva1269I | GAATGC | 2 cut(s) | 613, 996 |
| MvaI | CCWGG | 8 cut(s) | 227, 274, 279, 1211, 1448, 1512, 1850, 2225 |
| MvnI | CGCG | 3 cut(s) | 13, 741, 1950 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 139, 535, 567, 1801, 1915, 2088, 2343 |
| NciI | CCSGG | 2 cut(s) | 1575, 2093 |
| NcoI | CCATGG | 2 cut(s) | 248, 825 |
| NlaIV | GGNNCC | 4 cut(s) | 783, 890, 1016, 2126 |
| NmeAIII | GCCGAG | 1 cut(s) | 349 |
| NmuCI | GTSAC | 4 cut(s) | 488, 1006, 1244, 1490 |
| NspI | RCATGY | 3 cut(s) | 529, 623, 2321 |
| NspV | TTCGAA | 1 cut(s) | 1146 |
| OliI | CACNNNNGTG | 1 cut(s) | 1689 |
| PaeI | GCATGC | 1 cut(s) | 529 |
| PagI | TCATGA | 1 cut(s) | 846 |
| PasI | CCCWGGG | 1 cut(s) | 2224 |
| PceI | AGGCCT | 1 cut(s) | 277 |
| PciI | ACATGT | 1 cut(s) | 619 |
| PciSI | GCTCTTC | 3 cut(s) | 212, 512, 1644 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 738 |
| PctI | GAATGC | 2 cut(s) | 613, 996 |
| PdmI | GAANNNNTTC | 1 cut(s) | 162 |
| PfeI | GAWTC | 3 cut(s) | 1143, 1337, 1945 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1315 |
| PfoI | TCCNGGA | 1 cut(s) | 1446 |
| PkrI | GCNGC | 3 cut(s) | 132, 2007, 2158 |
| PleI | GAGTC | 5 cut(s) | 2, 844, 1497, 1852, 2404 |
| PpsI | GAGTC | 5 cut(s) | 2, 844, 1497, 1852, 2404 |
| PscI | ACATGT | 1 cut(s) | 619 |
| Psp124BI | GAGCTC | 2 cut(s) | 774, 1656 |
| Psp6I | CCWGG | 8 cut(s) | 225, 272, 277, 1209, 1446, 1510, 1848, 2223 |
| PspFI | CCCAGC | 2 cut(s) | 734, 1826 |
| PspGI | CCWGG | 8 cut(s) | 225, 272, 277, 1209, 1446, 1510, 1848, 2223 |
| PspN4I | GGNNCC | 4 cut(s) | 783, 890, 1016, 2126 |
| PspPI | GGNCC | 2 cut(s) | 1741, 2090 |
| PsuI | RGATCY | 4 cut(s) | 81, 700, 1134, 2163 |
| PvuII | CAGCTG | 2 cut(s) | 142, 1397 |
| RsaI | GTAC | 9 cut(s) | 293, 347, 890, 1067, 1331, 1373, 1441, 2126, 2255 |
| RsaNI | GTAC | 9 cut(s) | 292, 346, 889, 1066, 1330, 1372, 1440, 2125, 2254 |
| RseI | CAYNNNNRTG | 3 cut(s) | 75, 1689, 2360 |
| SacI | GAGCTC | 2 cut(s) | 774, 1656 |
| SapI | GCTCTTC | 3 cut(s) | 212, 512, 1644 |
| SaqAI | TTAA | 3 cut(s) | 303, 957, 1809 |
| SatI | GCNGC | 3 cut(s) | 131, 2006, 2157 |
| Sau96I | GGNCC | 2 cut(s) | 1741, 2090 |
| ScaI | AGTACT | 1 cut(s) | 347 |
| SchI | GAGTC | 5 cut(s) | 2, 844, 1498, 1853, 2405 |
| SduI | GDGCHC | 6 cut(s) | 224, 312, 747, 774, 1301, 1656 |
| SfaNI | GCATC | 3 cut(s) | 570, 942, 1015 |
| SfcI | CTRYAG | 2 cut(s) | 1240, 1660 |
| SfuI | TTCGAA | 1 cut(s) | 1146 |
| SinI | GGWCC | 1 cut(s) | 1741 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 75, 1689, 2360 |
| SmlI | CTYRAG | 6 cut(s) | 539, 776, 1055, 1138, 2339, 2375 |
| SmoI | CTYRAG | 6 cut(s) | 539, 776, 1055, 1138, 2339, 2375 |
| SphI | GCATGC | 1 cut(s) | 529 |
| Sse9I | AATT | 7 cut(s) | 162, 185, 404, 594, 819, 1119, 1280 |
| SseBI | AGGCCT | 1 cut(s) | 277 |
| SsiI | CCGC | 3 cut(s) | 73, 1126, 1497 |
| SspMI | CTAG | 4 cut(s) | 800, 980, 1163, 1361 |
| SstI | GAGCTC | 2 cut(s) | 774, 1656 |
| StuI | AGGCCT | 1 cut(s) | 277 |
| StyI | CCWWGG | 4 cut(s) | 111, 248, 811, 825 |
| TaiI | ACGT | 1 cut(s) | 964 |
| TaqI | TCGA | 4 cut(s) | 474, 747, 1146, 1647 |
| TasI | AATT | 7 cut(s) | 162, 185, 404, 594, 819, 1119, 1280 |
| TatI | WGTACW | 4 cut(s) | 291, 345, 1065, 2253 |
| TfiI | GAWTC | 3 cut(s) | 1143, 1337, 1945 |
| Tru1I | TTAA | 3 cut(s) | 303, 957, 1809 |
| Tru9I | TTAA | 3 cut(s) | 303, 957, 1809 |
| TscAI | CASTG | 8 cut(s) | 540, 563, 904, 1249, 1301, 1426, 1765, 2213 |
| TseFI | GTSAC | 4 cut(s) | 488, 1006, 1244, 1490 |
| TseI | GCWGC | 3 cut(s) | 130, 2005, 2156 |
| Tsp45I | GTSAC | 4 cut(s) | 488, 1006, 1244, 1490 |
| TspDTI | ATGAA | 5 cut(s) | 1417, 1427, 1520, 1958, 2034 |
| TspRI | CASTG | 8 cut(s) | 540, 563, 904, 1249, 1301, 1426, 1765, 2213 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1315 |
| VneI | GTGCAC | 2 cut(s) | 308, 1297 |
| VpaK11BI | GGWCC | 1 cut(s) | 1741 |
| XapI | RAATTY | 2 cut(s) | 594, 819 |
| XbaI | TCTAGA | 1 cut(s) | 799 |
| XceI | RCATGY | 3 cut(s) | 529, 623, 2321 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1454 |
| XmnI | GAANNNNTTC | 1 cut(s) | 162 |
| XspI | CTAG | 4 cut(s) | 800, 980, 1163, 1361 |
| ZrmI | AGTACT | 1 cut(s) | 347 |