RLG00000000964

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001346
Physical Location & Seq
Forward (+)
8650469 .. 8651541
1073 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000964

Sequence Viewer

Length: 651 bp
ATGGGAGAAATCGGCAATGTCAACCTCCCTTACTTCATAATAACTGTAGCGTTTCCGAAGAAGAACGTCAAAAAGGCGAAAATTCCCCCTCTGTTCACAAAGAGGCACATGGTGGGCGACAACTGGGGAATCGCTAAGATAAGATTGGCCGGCTTACTAGACATTGAGTACCTGGTACAGGTCGCAGAAGAAGGACCCATAAAGTGGCTGAAAGATCGATGGGAAATATTTCTGGATCGTATCAGAGATGGGAAGGGACGGTTGCCGATCGTACCCAGAGGCTCGGTTCAGGATACACTGAAAGCGAAGGCCACGCCGGGACTGTGTAACTTGCGTTGGAGGTCAGTGCCTAGAAAATGGTGGGGGGTTCAGATGACCGCCAGTAGGAAGCTGACGTTTGGAACAAGGTGGGAACGATTTCGGTCTGATAATGGTTTAGATGGGACGCGATGTTGTGTTTTCACCTATATCGGTTGGTTGTGTTTGTCTGTACTTGTGTTCAACACAGAGCATGGGACTCTGACAATGTGGCGAAACCAGGCGACCCCAGCAAGACCGCTGCCTGGCCTTCTTCTAGCTAATGTGCCTGCCGAGGTGGAACCAGCAGTGGAAGAAGAAGGACCCAATGGGGATGATTTCGCCGAACCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

24.47

Weight (kDa)

9.48

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 204
AccII CGCG 1 cut(s) 448
AciI CCGC 2 cut(s) 378, 557
AclWI GGATC 1 cut(s) 243
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 81
AdeI CACNNNGTG 1 cut(s) 112
AfaI GTAC 4 cut(s) 170, 177, 273, 492
AfiI CCNNNNNNNGG 4 cut(s) 178, 204, 384, 563
AgsI TTSAA 1 cut(s) 502
AjnI CCWGG 3 cut(s) 171, 537, 562
AluBI AGCT 2 cut(s) 391, 578
AluI AGCT 2 cut(s) 391, 578
AlwI GGATC 1 cut(s) 243
AoxI GGCC 3 cut(s) 147, 309, 565
ApeKI GCWGC 1 cut(s) 559
ApoI RAATTY 1 cut(s) 81
Asp700I GAANNNNTTC 2 cut(s) 228, 417
AspS9I GGNCC 2 cut(s) 194, 620
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 454
AvaII GGWCC 2 cut(s) 194, 620
BbvI GCAGC 1 cut(s) 546
BccI CCATC 3 cut(s) 213, 242, 434
BciT130I CCWGG 3 cut(s) 173, 539, 564
BciVI GTATCC 1 cut(s) 286
BcnI CCSGG 1 cut(s) 318
BfaI CTAG 3 cut(s) 158, 351, 575
BfmI CTRYAG 1 cut(s) 45
BfuI GTATCC 1 cut(s) 286
BisI GCNGC 1 cut(s) 560
BlsI GCNGC 1 cut(s) 561
Bme1390I CCNGG 4 cut(s) 173, 318, 539, 564
Bme18I GGWCC 2 cut(s) 194, 620
BmgT120I GGNCC 2 cut(s) 194, 620
BmiI GGNNCC 3 cut(s) 196, 600, 622
BmrFI CCNGG 4 cut(s) 173, 318, 539, 564
BmrI ACTGGG 1 cut(s) 133
BmuI ACTGGG 1 cut(s) 133
BpuMI CCSGG 1 cut(s) 318
Bsa29I ATCGAT 1 cut(s) 217
BsaJI CCNNGG 1 cut(s) 591
Bsc4I CCNNNNNNNGG 4 cut(s) 178, 204, 384, 563
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 128, 381
Bse3DI GCAATG 1 cut(s) 22
BseBI CCWGG 3 cut(s) 173, 539, 564
BseCI ATCGAT 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 1 cut(s) 637
BseLI CCNNNNNNNGG 4 cut(s) 178, 204, 384, 563
BseMI GCAATG 1 cut(s) 22
BseNI ACTGG 2 cut(s) 128, 381
BseXI GCAGC 1 cut(s) 546
BseYI CCCAGC 1 cut(s) 547
Bsh1236I CGCG 1 cut(s) 448
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 3 cut(s) 149, 311, 567
BshVI ATCGAT 1 cut(s) 217
BsiEI CGRYCG 1 cut(s) 270
BsiSI CCGG 2 cut(s) 150, 317
BslFI GGGAC 4 cut(s) 270, 333, 457, 529
BslI CCNNNNNNNGG 4 cut(s) 178, 204, 384, 563
BsmFI GGGAC 4 cut(s) 270, 333, 457, 529
BsnI GGCC 3 cut(s) 149, 311, 567
Bsp143I GATC 3 cut(s) 214, 235, 267
BspACI CCGC 2 cut(s) 378, 557
BspANI GGCC 3 cut(s) 149, 311, 567
BspDI ATCGAT 1 cut(s) 217
BspFNI CGCG 1 cut(s) 448
BspLI GGNNCC 3 cut(s) 196, 600, 622
BspPI GGATC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 22
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 2 cut(s) 128, 381
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 3 cut(s) 214, 235, 267
Bst2UI CCWGG 3 cut(s) 173, 539, 564
Bst4CI ACNGT 3 cut(s) 46, 261, 324
BstC8I GCNNGC 2 cut(s) 151, 588
BstDEI CTNAG 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 637
BstFNI CGCG 1 cut(s) 448
BstKTI GATC 3 cut(s) 217, 238, 270
BstMBI GATC 3 cut(s) 214, 235, 267
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 1 cut(s) 548
BstNI CCWGG 3 cut(s) 173, 539, 564
BstSCI CCNGG 4 cut(s) 171, 316, 537, 562
BstSFI CTRYAG 1 cut(s) 45
BstUI CGCG 1 cut(s) 448
BstV1I GCAGC 1 cut(s) 546
Bsu15I ATCGAT 1 cut(s) 217
BsuI GTATCC 1 cut(s) 286
BsuRI GGCC 3 cut(s) 149, 311, 567
BsuTUI ATCGAT 1 cut(s) 217
BtgZI GCGATG 1 cut(s) 463
BtsCI GGATG 1 cut(s) 637
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 3 cut(s) 296, 351, 612
Cac8I GCNNGC 2 cut(s) 151, 588
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 194, 620
ClaI ATCGAT 1 cut(s) 217
CseI GACGC 1 cut(s) 454
CsiI ACCWGGT 1 cut(s) 171
Csp6I GTAC 4 cut(s) 169, 176, 272, 491
CviAII CATG 2 cut(s) 109, 512
CviJI RGCY 8 cut(s) 149, 153, 208, 282, 311, 391, 567, 578
CviKI_1 RGCY 8 cut(s) 149, 153, 208, 282, 311, 391, 567, 578
CviQI GTAC 4 cut(s) 169, 176, 272, 491
DdeI CTNAG 1 cut(s) 135
DpnI GATC 3 cut(s) 216, 237, 269
DpnII GATC 3 cut(s) 214, 235, 267
DraIII CACNNNGTG 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 194, 620
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoO109I RGGNCCY 2 cut(s) 194, 620
EcoRII CCWGG 3 cut(s) 171, 537, 562
FaeI CATG 2 cut(s) 112, 515
FaiI YATR 6 cut(s) 38, 110, 200, 468, 513, 649
FaqI GGGAC 4 cut(s) 270, 333, 457, 529
FatI CATG 2 cut(s) 108, 511
Fnu4HI GCNGC 1 cut(s) 560
FokI GGATG 1 cut(s) 644
Fsp4HI GCNGC 1 cut(s) 560
FspBI CTAG 3 cut(s) 158, 351, 575
GluI GCNGC 1 cut(s) 560
GsaI CCCAGC 1 cut(s) 551
HaeIII GGCC 3 cut(s) 149, 311, 567
HapII CCGG 2 cut(s) 150, 317
HgaI GACGC 1 cut(s) 454
Hin1II CATG 2 cut(s) 112, 515
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 129, 517
HpaII CCGG 2 cut(s) 150, 317
HphI GGTGA 1 cut(s) 454
Hpy166II GTNNAC 2 cut(s) 22, 96
Hpy188I TCNGA 5 cut(s) 57, 245, 372, 427, 522
Hpy188III TCNNGA 2 cut(s) 233, 290
Hpy8I GTNNAC 2 cut(s) 22, 96
HpyAV CCTTC 5 cut(s) 185, 247, 301, 578, 611
HpyCH4III ACNGT 3 cut(s) 46, 261, 324
HpyCH4IV ACGT 2 cut(s) 66, 395
HpyF10VI GCNNNNNNNGC 1 cut(s) 548
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 2 cut(s) 66, 395
Hsp92II CATG 2 cut(s) 112, 515
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 3 cut(s) 214, 235, 267
Lsp1109I GCAGC 1 cut(s) 546
MabI ACCWGGT 1 cut(s) 171
MaeI CTAG 3 cut(s) 158, 351, 575
MaeII ACGT 2 cut(s) 66, 395
MaeIII GTNAC 1 cut(s) 326
MalI GATC 3 cut(s) 216, 237, 269
MboI GATC 3 cut(s) 214, 235, 267
MboII GAAGA 6 cut(s) 70, 73, 200, 563, 623, 626
MluCI AATT 1 cut(s) 81
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 6 cut(s) 35, 96, 99, 272, 333, 586
MroNI GCCGGC 1 cut(s) 149
MroXI GAANNNNTTC 2 cut(s) 228, 417
MspA1I CMGCKG 1 cut(s) 559
MspI CCGG 2 cut(s) 150, 317
MspR9I CCNGG 4 cut(s) 173, 318, 539, 564
MvaI CCWGG 3 cut(s) 173, 539, 564
MvnI CGCG 1 cut(s) 448
MwoI GCNNNNNNNGC 1 cut(s) 548
NaeI GCCGGC 1 cut(s) 151
NciI CCSGG 1 cut(s) 318
NdeII GATC 3 cut(s) 214, 235, 267
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 2 cut(s) 112, 515
NlaIV GGNNCC 3 cut(s) 196, 600, 622
NmeAIII GCCGAG 1 cut(s) 616
PdiI GCCGGC 1 cut(s) 151
PdmI GAANNNNTTC 2 cut(s) 228, 417
PfeI GAWTC 1 cut(s) 129
PflMI CCANNNNNTGG 1 cut(s) 204
PkrI GCNGC 1 cut(s) 561
Ple19I CGATCG 1 cut(s) 270
PleI GAGTC 1 cut(s) 511
PpsI GAGTC 1 cut(s) 511
PpuMI RGGWCCY 2 cut(s) 194, 620
Psp5II RGGWCCY 2 cut(s) 194, 620
Psp6I CCWGG 3 cut(s) 171, 537, 562
PspFI CCCAGC 1 cut(s) 547
PspGI CCWGG 3 cut(s) 171, 537, 562
PspN4I GGNNCC 3 cut(s) 196, 600, 622
PspPI GGNCC 2 cut(s) 194, 620
PspPPI RGGWCCY 2 cut(s) 194, 620
PvuI CGATCG 1 cut(s) 270
RsaI GTAC 4 cut(s) 170, 177, 273, 492
RsaNI GTAC 4 cut(s) 169, 176, 272, 491
SatI GCNGC 1 cut(s) 560
Sau3AI GATC 3 cut(s) 214, 235, 267
Sau96I GGNCC 2 cut(s) 194, 620
SchI GAGTC 1 cut(s) 511
ScrFI CCNGG 4 cut(s) 173, 318, 539, 564
SexAI ACCWGGT 1 cut(s) 171
SfcI CTRYAG 1 cut(s) 45
SinI GGWCC 2 cut(s) 194, 620
Sse9I AATT 1 cut(s) 81
SsiI CCGC 2 cut(s) 378, 557
SspI AATATT 1 cut(s) 228
SspMI CTAG 3 cut(s) 158, 351, 575
StyD4I CCNGG 4 cut(s) 171, 316, 537, 562
TaaI ACNGT 3 cut(s) 46, 261, 324
TaiI ACGT 2 cut(s) 69, 398
TaqI TCGA 1 cut(s) 217
TaqII GACCGA 1 cut(s) 411
TasI AATT 1 cut(s) 81
TatI WGTACW 1 cut(s) 490
TfiI GAWTC 1 cut(s) 129
TscAI CASTG 3 cut(s) 303, 351, 612
TseI GCWGC 1 cut(s) 559
TspDTI ATGAA 1 cut(s) 25
TspRI CASTG 3 cut(s) 303, 351, 612
Van91I CCANNNNNTGG 1 cut(s) 204
VpaK11BI GGWCC 2 cut(s) 194, 620
XagI CCTNNNNNAGG 1 cut(s) 176
XapI RAATTY 1 cut(s) 81
XmnI GAANNNNTTC 2 cut(s) 228, 417
XspI CTAG 3 cut(s) 158, 351, 575
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.