Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001346

Physical Location & Seq

Genomic Coordinates Reverse (-)

15222403 .. 15226143

Gene Structure 3741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30102

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGGCGGTGGTGATAGCGACGACTTCAATTGAGTTGATATTTGGGTTTCTGGTGGTGCTGTGGCAGAGATCGTCTGATAAGACTAGTCGGGTGGTGAAGCAGCTGGCGGTGCCGCTTAAGGAGGAGGAAGATGAGTTTGAGGTTGCATCGGGCAAGACTAGGGTGACTATTTTCTCTGGGACTCAGACCGGCACCGCTGAAGGATTGGTGGATCTGGTATGGATCTCAGAAGCAAAGCAAGGACTCTGCCAGGACCTGTTAGGAGAGGCAACAATATCTTGGTGGGTTAAATTTATCCCCTGTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0003958 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0006725 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009698 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0012505 GO:0016491 GO:0016651 GO:0016653 GO:0019748 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAD_binding_1 Flavodoxin_1 NAD_binding_1

Protein Analysis

102

Amino Acids

11.23

Weight (kDa)

4.71

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001346)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331641 RchiOBHm_Chr4g0403061 RchiOBHm_Chr5g0020951 RchiOBHm_Chr6g0289681 RchiOBHm_Chr7g0233891
rosa_laevigata	RLG00000000964 RLG00000002366 RLG00000002887 RLG00000021410 RLG00000025523 RLG00000027777 RLG00000034745
rosa_multiflora	Rmu_sc0000469.1_g000021 Rmu_sc0000483.1_g000009 Rmu_sc0000551.1_g000015 Rmu_sc0000657.1_g000013 Rmu_sc0001211.1_g000011 Rmu_sc0002680.1_g000019 Rmu_sc0003500.1_g000016 Rmu_sc0004199.1_g000016 Rmu_sc0004720.1_g000013 Rmu_sc0007421.1_g000001 Rmu_sc0007421.1_g000002 Rmu_sc0013680.1_g000003 Rmu_ssc0000207.1_g000005
rosa_roxburghii	Rroxscaffold_1G00009200 Rroxscaffold_1G00009210 Rroxscaffold_1G00018240 Rroxscaffold_5G00344440 Rroxscaffold_6G00425550
rosa_rugosa	Rorug01G0035400 Rorug01G0035500 Rorug02G0097900 Rorug03G0288000 Rorug04G0075200 Rorug05G0273800 Rorug05G0465300 Rorug07G0174600 Rorug07G0188500
rosa_samantha	Rh1AG007100 Rh2BG565400 Rh5AG233500 Rh5BG162000 Rh5BG190000 Rh5CG165100 Rh6BG226900 Rh6BG242900 Rh6DG175800 Rh7BG389500 Rh7BG389600 Rh7CG459100
rosa_wichuraiana	Rw2G022630 Rw5G040180 Rw7G029920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	109, 191
AciI	CCGC	4 cut(s)	5, 107, 113, 195
AclWI	GGATC	2 cut(s)	219, 230
AcsI	RAATTY	1 cut(s)	290
AcuI	CTGAAG	1 cut(s)	219
AflII	CTTAAG	1 cut(s)	116
AgsI	TTSAA	1 cut(s)	27
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	1 cut(s)	103
AluI	AGCT	1 cut(s)	103
AlwI	GGATC	2 cut(s)	219, 230
AlwNI	CAGNNNCTG	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	3 cut(s)	22, 106, 175
AvaII	GGWCC	1 cut(s)	253
BanI	GGYRCC	2 cut(s)	109, 191
BbvI	GCAGC	1 cut(s)	112
BciT130I	CCWGG	1 cut(s)	251
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	2 cut(s)	84, 159
BfrI	CTTAAG	1 cut(s)	116
BisI	GCNGC	2 cut(s)	101, 113
BlsI	GCNGC	2 cut(s)	102, 114
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	2 cut(s)	111, 193
BmrFI	CCNGG	1 cut(s)	251
BmsI	GCATC	1 cut(s)	155
Bse118I	RCCGGY	1 cut(s)	188
BseBI	CCWGG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	197, 240
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	1 cut(s)	112
BshNI	GGYRCC	2 cut(s)	109, 191
BsiSI	CCGG	1 cut(s)	189
BslFI	GGGAC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	68, 211, 222
BspACI	CCGC	4 cut(s)	5, 107, 113, 195
BspCNI	CTCAG	2 cut(s)	196, 239
BspLI	GGNNCC	2 cut(s)	111, 193
BspPI	GGATC	2 cut(s)	219, 230
BspT107I	GGYRCC	2 cut(s)	109, 191
BspTI	CTTAAG	1 cut(s)	116
BsrFI	RCCGGY	1 cut(s)	188
BssAI	RCCGGY	1 cut(s)	188
BssMI	GATC	3 cut(s)	68, 211, 222
Bst2UI	CCWGG	1 cut(s)	251
BstAFI	CTTAAG	1 cut(s)	116
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	183, 226
BstKTI	GATC	3 cut(s)	71, 214, 225
BstMBI	GATC	3 cut(s)	68, 211, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	112
BstX2I	RGATCY	2 cut(s)	211, 222
BstYI	RGATCY	2 cut(s)	211, 222
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	253
CviJI	RGCY	1 cut(s)	103
CviKI_1	RGCY	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	183, 226
DpnI	GATC	3 cut(s)	70, 213, 224
DpnII	GATC	3 cut(s)	68, 211, 222
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRII	CCWGG	1 cut(s)	249
FaiI	YATR	1 cut(s)	220
FaqI	GGGAC	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	101, 113
Fsp4HI	GCNGC	2 cut(s)	101, 113
FspBI	CTAG	2 cut(s)	84, 159
GluI	GCNGC	2 cut(s)	101, 113
HapII	CCGG	1 cut(s)	189
HinfI	GANTC	2 cut(s)	181, 243
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	3 cut(s)	22, 106, 175
Hpy188I	TCNGA	3 cut(s)	76, 186, 229
Hpy99I	CGWCG	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	194
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	2 cut(s)	183, 226
Kzo9I	GATC	3 cut(s)	68, 211, 222
LpnPI	CCDG	8 cut(s)	35, 89, 162, 200, 202, 236, 263, 269
Lsp1109I	GCAGC	1 cut(s)	112
LweI	GCATC	1 cut(s)	155
MaeI	CTAG	2 cut(s)	84, 159
MaeIII	GTNAC	1 cut(s)	163
MalI	GATC	3 cut(s)	70, 213, 224
MboI	GATC	3 cut(s)	68, 211, 222
MboII	GAAGA	1 cut(s)	140
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	2 cut(s)	211, 222
MluCI	AATT	2 cut(s)	27, 290
MlyI	GAGTC	2 cut(s)	175, 237
MnlI	CCTC	4 cut(s)	115, 118, 133, 259
MseI	TTAA	3 cut(s)	117, 288, 307
MspA1I	CMGCKG	2 cut(s)	103, 197
MspCI	CTTAAG	1 cut(s)	116
MspI	CCGG	1 cut(s)	189
MspR9I	CCNGG	1 cut(s)	251
MunI	CAATTG	1 cut(s)	27
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	3 cut(s)	68, 211, 222
NlaIV	GGNNCC	2 cut(s)	111, 193
NmuCI	GTSAC	1 cut(s)	163
PkrI	GCNGC	2 cut(s)	102, 114
PleI	GAGTC	2 cut(s)	175, 237
PpsI	GAGTC	2 cut(s)	175, 237
PpuMI	RGGWCCY	1 cut(s)	253
Psp5II	RGGWCCY	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	249
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	111, 193
PspPI	GGNCC	1 cut(s)	253
PspPPI	RGGWCCY	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	256
PsuI	RGATCY	2 cut(s)	211, 222
PvuII	CAGCTG	1 cut(s)	103
SaqAI	TTAA	3 cut(s)	117, 288, 307
SatI	GCNGC	2 cut(s)	101, 113
Sau3AI	GATC	3 cut(s)	68, 211, 222
Sau96I	GGNCC	1 cut(s)	253
SchI	GAGTC	2 cut(s)	175, 237
ScrFI	CCNGG	1 cut(s)	251
SetI	ASST	3 cut(s)	105, 144, 258
SfaNI	GCATC	1 cut(s)	155
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	2 cut(s)	27, 290
SsiI	CCGC	4 cut(s)	5, 107, 113, 195
SspMI	CTAG	2 cut(s)	84, 159
StyD4I	CCNGG	1 cut(s)	249
TasI	AATT	2 cut(s)	27, 290
TauI	GCSGC	1 cut(s)	115
Tru1I	TTAA	3 cut(s)	117, 288, 307
Tru9I	TTAA	3 cut(s)	117, 288, 307
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	1 cut(s)	163
Vha464I	CTTAAG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	290
XspI	CTAG	2 cut(s)	84, 159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.