Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Forward (+)

5984005 .. 5986318

Gene Structure 2314 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0035400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAGGGTAGTTTTGCTGAGGAGCTTTACTCAGAAAGTTTACAGCTATCAAAAATGCAATTGGGTTCCACATCGAACGTCACCGATCATGGTAAAGTTCAGTTGTCGGATGAAGATGGATCTTCATGGTGTGGTTCTGATGACGAAGTGAATGAAGCCTCTGATATGGACAAGGAATGGCAGAGGAGACGTGACCAATTCCATACGATGGGATACCGTGATGGTGTTATAGCTGGAAAGGAAGCTTCTTCTCAGGAAGGATTCAATATTGGCTTTAAGCAATCAGTCCTTGTTGGTTACAACTGGGGTCTTGTGAGAGGTGTTACAAGCACATTGGCTTCCCTTCCAGATGGCATAAGGGAGAAGTTGATTGAAACAGAAGAACAAAGAACTCGATTTCAGGGATTGTATGAATCTGTTCATTCCCTTTCTACAACAGATGCCCTTGGGTTGTTTAATGATGAAATCACAAGTAAAAATGATAGAGAACAAATTGAAAGTTCAGAGACTAGTTCTTTTGAAGTTGAAACTGGTTTGGAAGAGCAAAGATTAGACCGTAGTGGTCTAGGAAATTACTCTGCAAAGCTCCGTTCACTTCTTTTGGAGTCTCCTGGAATCAAAGTAAAGTTCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009987 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046496 GO:0051186 GO:0051188 GO:0055086 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00760 ko01100 map00250 map00760 map01100

Pfam Domains

Protein Families

FAD_binding_2 Succ_DH_flav_C

Protein Analysis

211

Amino Acids

23.52

Weight (kDa)

4.6

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Yae1_N	PF09811	71 - 108	5.7e-10	Essential protein Yae1, N terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AclWI	GGATC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	208
AgsI	TTSAA	5 cut(s)	265, 374, 497, 521, 527
AhlI	ACTAGT	1 cut(s)	509
AjiI	CACGTC	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	610
AluBI	AGCT	5 cut(s)	25, 46, 233, 245, 586
AluI	AGCT	5 cut(s)	25, 46, 233, 245, 586
Alw26I	GTCTC	3 cut(s)	181, 500, 612
AlwI	GGATC	1 cut(s)	127
Asp700I	GAANNNNTTC	1 cut(s)	417
AsuHPI	GGTGA	1 cut(s)	73
BbvCI	CCTCAGC	1 cut(s)	18
BccI	CCATC	4 cut(s)	110, 202, 215, 344
BciT130I	CCWGG	1 cut(s)	612
BciVI	GTATCC	1 cut(s)	206
BcoDI	GTCTC	3 cut(s)	181, 500, 612
BcuI	ACTAGT	1 cut(s)	509
BfaI	CTAG	3 cut(s)	510, 566, 634
BfuI	GTATCC	1 cut(s)	206
Bme1390I	CCNGG	1 cut(s)	612
BmgBI	CACGTC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	67
BmrFI	CCNGG	1 cut(s)	612
BmrI	ACTGGG	1 cut(s)	313
BmsI	GCATC	1 cut(s)	430
BmuI	ACTGGG	1 cut(s)	313
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
Bpu10I	CCTNAGC	1 cut(s)	18
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	2 cut(s)	308, 535
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	3 cut(s)	9, 45, 266
BseNI	ACTGG	2 cut(s)	308, 535
BseRI	GAGGAG	2 cut(s)	35, 199
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	3 cut(s)	181, 500, 612
BsmBI	CGTCTC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	85, 119
BspCNI	CTCAG	3 cut(s)	10, 44, 265
BspLI	GGNNCC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	534
BsrI	ACTGG	2 cut(s)	308, 535
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	2 cut(s)	85, 119
BssT1I	CCWWGG	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	218, 557
Bst6I	CTCTTC	1 cut(s)	534
BstDEI	CTNAG	3 cut(s)	18, 31, 252
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	2 cut(s)	88, 122
BstMAI	GTCTC	3 cut(s)	181, 500, 612
BstMBI	GATC	2 cut(s)	85, 119
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	1 cut(s)	610
BstX2I	RGATCY	1 cut(s)	119
BstYI	RGATCY	1 cut(s)	119
BsuI	GTATCC	1 cut(s)	206
BtrI	CACGTC	1 cut(s)	191
BtsCI	GGATG	1 cut(s)	115
CviAII	CATG	2 cut(s)	89, 126
CviJI	RGCY	8 cut(s)	25, 46, 158, 233, 245, 273, 338, 586
CviKI_1	RGCY	8 cut(s)	25, 46, 158, 233, 245, 273, 338, 586
DdeI	CTNAG	3 cut(s)	18, 31, 252
DpnI	GATC	2 cut(s)	87, 121
DpnII	GATC	2 cut(s)	85, 119
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	610
EcoT14I	CCWWGG	1 cut(s)	445
ErhI	CCWWGG	1 cut(s)	445
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	2 cut(s)	92, 129
FaiI	YATR	7 cut(s)	90, 127, 167, 204, 230, 356, 411
FatI	CATG	2 cut(s)	88, 125
FokI	GGATG	1 cut(s)	122
FspBI	CTAG	3 cut(s)	510, 566, 634
Hin1II	CATG	2 cut(s)	92, 129
HindIII	AAGCTT	1 cut(s)	243
HinfI	GANTC	4 cut(s)	261, 413, 605, 615
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	2 cut(s)	41, 593
Hpy188I	TCNGA	5 cut(s)	34, 109, 139, 163, 505
Hpy188III	TCNNGA	2 cut(s)	254, 347
Hpy8I	GTNNAC	2 cut(s)	41, 593
HpyAV	CCTTC	2 cut(s)	251, 353
HpyCH4III	ACNGT	2 cut(s)	218, 557
HpyCH4IV	ACGT	2 cut(s)	78, 190
HpyCH4V	TGCA	2 cut(s)	58, 581
HpyF3I	CTNAG	3 cut(s)	18, 31, 252
HpySE526I	ACGT	2 cut(s)	78, 190
Hsp92II	CATG	2 cut(s)	92, 129
Kzo9I	GATC	2 cut(s)	85, 119
LguI	GCTCTTC	1 cut(s)	534
LmnI	GCTCC	2 cut(s)	22, 591
LpnPI	CCDG	8 cut(s)	219, 239, 289, 360, 386, 516, 597, 624
LweI	GCATC	1 cut(s)	430
MaeI	CTAG	3 cut(s)	510, 566, 634
MaeII	ACGT	2 cut(s)	78, 190
MaeIII	GTNAC	4 cut(s)	79, 191, 296, 322
MalI	GATC	2 cut(s)	87, 121
MboI	GATC	2 cut(s)	85, 119
MboII	GAAGA	5 cut(s)	114, 125, 240, 392, 551
MfeI	CAATTG	1 cut(s)	59
MflI	RGATCY	1 cut(s)	119
MluCI	AATT	4 cut(s)	59, 197, 492, 571
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	4 cut(s)	13, 169, 177, 311
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	2 cut(s)	276, 456
MspR9I	CCNGG	1 cut(s)	612
MunI	CAATTG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	612
NdeII	GATC	2 cut(s)	85, 119
NlaIII	CATG	2 cut(s)	92, 129
NlaIV	GGNNCC	1 cut(s)	67
NmuCI	GTSAC	2 cut(s)	79, 191
PciSI	GCTCTTC	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	3 cut(s)	261, 413, 615
PflMI	CCANNNNNTGG	1 cut(s)	208
PfoI	TCCNGGA	1 cut(s)	610
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	534
SaqAI	TTAA	2 cut(s)	276, 456
Sau3AI	GATC	2 cut(s)	85, 119
SchI	GAGTC	1 cut(s)	614
ScrFI	CCNGG	1 cut(s)	612
SetI	ASST	8 cut(s)	27, 48, 81, 193, 235, 247, 322, 588
SfaNI	GCATC	1 cut(s)	430
SpeI	ACTAGT	1 cut(s)	509
Sse9I	AATT	4 cut(s)	59, 197, 492, 571
SspI	AATATT	1 cut(s)	268
SspMI	CTAG	3 cut(s)	510, 566, 634
StyD4I	CCNGG	1 cut(s)	610
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	2 cut(s)	218, 557
TaiI	ACGT	2 cut(s)	81, 193
TaqI	TCGA	2 cut(s)	74, 394
TasI	AATT	4 cut(s)	59, 197, 492, 571
TfiI	GAWTC	3 cut(s)	261, 413, 615
Tru1I	TTAA	2 cut(s)	276, 456
Tru9I	TTAA	2 cut(s)	276, 456
TseFI	GTSAC	2 cut(s)	79, 191
Tsp45I	GTSAC	2 cut(s)	79, 191
TspDTI	ATGAA	6 cut(s)	114, 126, 168, 410, 426, 477
TspGWI	ACGGA	1 cut(s)	578
Van91I	CCANNNNNTGG	1 cut(s)	208
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	3 cut(s)	510, 566, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.