Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Reverse (-)

61625980 .. 61628212

Gene Structure 2233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG388000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGTGAAGATCGACGTGATCTGTTTCAGAGGGGGATGGACTGGTGTTGGGGTGATTGCCGACCACTATTCTATTCTGCTTCGATCTGCGCTCGTTGGAGAGGCTTGCAGCTGGGAAGGGCTGATTTGGTCTGATCTATTGCGATGTTATGCGGCGGGGAAGTATGGCGGAGGAGGTGGTGATCTGGAGTTTGGTGATTGCAGGCCGGCGGACAAGGTTGGTCGAGGTGATTTTACTGTTGTTGGTCTAGGTGGTCTACGATGTCGAGGTCCTCTGGCAGCGGTGCAGTTGTCCAGTAGTGGTGGTCTGGAATTTCATGCGAAGGCTGTGGTCACTGGAGGCGAAGGGCACGGTGGCGTCTGGGCTTCTAGCGTTAAAGGGTGCGGCGATACCTCCGTTCTTTCCAAAGCTAGGACTGATTGGGCCATCTGGGCCTCGAACCTGGGCTTCTTGGCCATCCTCTTCAGGCTAGGGCAAGATGTTACGTCCGCAGCAATGCGGGCTTGTAGAGATGCCATCACTTCCAATTCGATCCTTGCTTTTCGAAGAGGGGTTCAGGGTAGTGAGGTTTTGACATGGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lin0512_fam

Protein Analysis

194

Amino Acids

20.24

Weight (kDa)

8.19

Isoelectric Point (pI)

26.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lin0512_fam	PF09585	158 - 184	6.8e-06	Conserved hypothetical protein (Lin0512_fam)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	256
AciI	CCGC	8 cut(s)	152, 155, 168, 209, 281, 384, 489, 499
AclWI	GGATC	1 cut(s)	526
AcoI	YGGCCR	1 cut(s)	453
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	1 cut(s)	448
AcyI	GRCGYC	1 cut(s)	357
AfiI	CCNNNNNNNGG	1 cut(s)	411
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	1 cut(s)	441
AluBI	AGCT	2 cut(s)	111, 410
AluI	AGCT	2 cut(s)	111, 410
AlwI	GGATC	1 cut(s)	526
AoxI	GGCC	4 cut(s)	203, 423, 432, 453
ApeKI	GCWGC	3 cut(s)	108, 278, 491
ApoI	RAATTY	1 cut(s)	311
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	3 cut(s)	269, 423, 432
AsuHPI	GGTGA	5 cut(s)	16, 64, 191, 206, 239
AsuII	TTCGAA	1 cut(s)	544
AvaII	GGWCC	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	351
BaeI	ACNNNNGTAYC	2 cut(s)	381, 414
BalI	TGGCCA	1 cut(s)	455
BbvI	GCAGC	3 cut(s)	120, 290, 503
BccI	CCATC	4 cut(s)	30, 434, 464, 524
BciT130I	CCWGG	1 cut(s)	443
BfaI	CTAG	4 cut(s)	248, 369, 411, 470
BglI	GCCNNNNNGGC	1 cut(s)	431
BisI	GCNGC	5 cut(s)	109, 153, 279, 385, 492
BlsI	GCNGC	5 cut(s)	110, 154, 280, 386, 493
Bme1390I	CCNGG	1 cut(s)	443
Bme18I	GGWCC	1 cut(s)	269
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	3 cut(s)	269, 423, 432
BmrFI	CCNGG	1 cut(s)	443
BmsI	GCATC	1 cut(s)	502
BpmI	CTGGAG	2 cut(s)	206, 357
Bpu14I	TTCGAA	1 cut(s)	544
BsaHI	GRCGYC	1 cut(s)	357
BsaJI	CCNNGG	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
Bse118I	RCCGGY	1 cut(s)	205
Bse1I	ACTGG	3 cut(s)	46, 294, 340
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	41, 456
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseMI	GCAATG	1 cut(s)	501
BseNI	ACTGG	3 cut(s)	46, 294, 340
BseRI	GAGGAG	1 cut(s)	186
BseSI	GKGCMC	1 cut(s)	351
BseXI	GCAGC	3 cut(s)	120, 290, 503
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	305
BshFI	GGCC	4 cut(s)	205, 425, 434, 455
BsiSI	CCGG	1 cut(s)	206
BslI	CCNNNNNNNGG	1 cut(s)	411
BsnI	GGCC	4 cut(s)	205, 425, 434, 455
Bsp119I	TTCGAA	1 cut(s)	544
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	6 cut(s)	9, 18, 83, 133, 181, 531
BspACI	CCGC	8 cut(s)	152, 155, 168, 209, 281, 384, 489, 499
BspANI	GGCC	4 cut(s)	205, 425, 434, 455
BspPI	GGATC	1 cut(s)	526
BspT104I	TTCGAA	1 cut(s)	544
BsrDI	GCAATG	1 cut(s)	501
BsrFI	RCCGGY	1 cut(s)	205
BsrI	ACTGG	3 cut(s)	46, 294, 340
BssAI	RCCGGY	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	6 cut(s)	9, 18, 83, 133, 181, 531
BssNI	GRCGYC	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	443
Bst4CI	ACNGT	2 cut(s)	238, 353
Bst6I	CTCTTC	2 cut(s)	467, 541
BstACI	GRCGYC	1 cut(s)	357
BstBI	TTCGAA	1 cut(s)	544
BstC8I	GCNNGC	4 cut(s)	106, 203, 207, 501
BstF5I	GGATG	2 cut(s)	41, 456
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	6 cut(s)	12, 21, 86, 136, 184, 534
BstMBI	GATC	6 cut(s)	9, 18, 83, 133, 181, 531
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 500
BstNI	CCWGG	1 cut(s)	443
BstSCI	CCNGG	1 cut(s)	441
BstSLI	GKGCMC	1 cut(s)	351
BstV1I	GCAGC	3 cut(s)	120, 290, 503
BsuRI	GGCC	4 cut(s)	205, 425, 434, 455
BtgZI	GCGATG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	41, 456
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	4 cut(s)	106, 203, 207, 501
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	205
Cfr13I	GGNCC	3 cut(s)	269, 423, 432
CseI	GACGC	1 cut(s)	346
CviAII	CATG	2 cut(s)	317, 576
DpnI	GATC	6 cut(s)	11, 20, 85, 135, 183, 533
DpnII	GATC	6 cut(s)	9, 18, 83, 133, 181, 531
EaeI	YGGCCR	1 cut(s)	453
Eam1104I	CTCTTC	2 cut(s)	467, 541
EarI	CTCTTC	2 cut(s)	467, 541
EciI	GGCGGA	2 cut(s)	183, 224
Eco47I	GGWCC	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	448
EcoO109I	RGGNCCY	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	441
FaeI	CATG	2 cut(s)	320, 579
FaiI	YATR	4 cut(s)	150, 165, 318, 577
FatI	CATG	2 cut(s)	316, 575
FauI	CCCGC	2 cut(s)	148, 492
FblI	GTMKAC	1 cut(s)	256
Fnu4HI	GCNGC	5 cut(s)	109, 153, 279, 385, 492
FokI	GGATG	2 cut(s)	48, 443
Fsp4HI	GCNGC	5 cut(s)	109, 153, 279, 385, 492
FspBI	CTAG	4 cut(s)	248, 369, 411, 470
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	5 cut(s)	109, 153, 279, 385, 492
GsaI	CCCAGC	1 cut(s)	115
GsuI	CTGGAG	2 cut(s)	206, 357
HaeIII	GGCC	4 cut(s)	205, 425, 434, 455
HapII	CCGG	1 cut(s)	206
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	91
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	320, 579
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	206
HphI	GGTGA	5 cut(s)	16, 64, 191, 206, 239
Hpy166II	GTNNAC	1 cut(s)	257
Hpy188I	TCNGA	2 cut(s)	29, 133
Hpy188III	TCNNGA	2 cut(s)	185, 308
Hpy8I	GTNNAC	1 cut(s)	257
Hpy99I	CGWCG	1 cut(s)	17
HpyAV	CCTTC	3 cut(s)	110, 316, 338
HpyCH4III	ACNGT	2 cut(s)	238, 353
HpyCH4IV	ACGT	2 cut(s)	15, 485
HpyCH4V	TGCA	3 cut(s)	108, 201, 286
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 500
HpySE526I	ACGT	2 cut(s)	15, 485
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	320, 579
HspAI	GCGC	1 cut(s)	89
KroI	GCCGGC	1 cut(s)	205
KroNI	GCCGGC	1 cut(s)	207
Kzo9I	GATC	6 cut(s)	9, 18, 83, 133, 181, 531
Lsp1109I	GCAGC	3 cut(s)	120, 290, 503
LweI	GCATC	1 cut(s)	502
MaeI	CTAG	4 cut(s)	248, 369, 411, 470
MaeII	ACGT	2 cut(s)	15, 485
MaeIII	GTNAC	2 cut(s)	331, 481
MalI	GATC	6 cut(s)	11, 20, 85, 135, 183, 533
MboI	GATC	6 cut(s)	9, 18, 83, 133, 181, 531
MboII	GAAGA	3 cut(s)	19, 454, 558
MhlI	GDGCHC	1 cut(s)	351
MlsI	TGGCCA	1 cut(s)	455
MluCI	AATT	2 cut(s)	311, 526
MluNI	TGGCCA	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	76
Mox20I	TGGCCA	1 cut(s)	455
MroNI	GCCGGC	1 cut(s)	205
MscI	TGGCCA	1 cut(s)	455
MseI	TTAA	1 cut(s)	375
Msp20I	TGGCCA	1 cut(s)	455
MspA1I	CMGCKG	2 cut(s)	111, 281
MspI	CCGG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	443
MvaI	CCWGG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	431, 500
NaeI	GCCGGC	1 cut(s)	207
NdeII	GATC	6 cut(s)	9, 18, 83, 133, 181, 531
NgoMIV	GCCGGC	1 cut(s)	205
NlaIII	CATG	2 cut(s)	320, 579
NmuCI	GTSAC	1 cut(s)	331
NspV	TTCGAA	1 cut(s)	544
PdiI	GCCGGC	1 cut(s)	207
PkrI	GCNGC	5 cut(s)	110, 154, 280, 386, 493
PpuMI	RGGWCCY	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	441
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	1 cut(s)	441
PspPI	GGNCC	3 cut(s)	269, 423, 432
PspPPI	RGGWCCY	1 cut(s)	269
PvuII	CAGCTG	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	5 cut(s)	109, 153, 279, 385, 492
Sau3AI	GATC	6 cut(s)	9, 18, 83, 133, 181, 531
Sau96I	GGNCC	3 cut(s)	269, 423, 432
ScrFI	CCNGG	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	351
SfaNI	GCATC	1 cut(s)	502
SfiI	GGCCNNNNNGGCC	1 cut(s)	431
SfuI	TTCGAA	1 cut(s)	544
SinI	GGWCC	1 cut(s)	269
Sse9I	AATT	2 cut(s)	311, 526
SsiI	CCGC	8 cut(s)	152, 155, 168, 209, 281, 384, 489, 499
SspMI	CTAG	4 cut(s)	248, 369, 411, 470
StyD4I	CCNGG	1 cut(s)	441
TaaI	ACNGT	2 cut(s)	238, 353
TaiI	ACGT	2 cut(s)	18, 488
TaqI	TCGA	7 cut(s)	12, 82, 223, 265, 437, 530, 544
TasI	AATT	2 cut(s)	311, 526
TauI	GCSGC	2 cut(s)	155, 387
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	3 cut(s)	108, 278, 491
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	1 cut(s)	305
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	269
XapI	RAATTY	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	256
XspI	CTAG	4 cut(s)	248, 369, 411, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.