Rh6DG405200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001117
Physical Location & Seq
Forward (+)
59274198 .. 59281307
7110 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG405200.1

Sequence Viewer

Length: 219 bp
ATGGTGGAGATTTGGGAGTTGGGACACAATGTGCTACTCACGGTCGTCGTCAATCTCAACGCCCACCCAGCGAGCGAGGCACCGGTGGACAAGATGGTCGTGGTGGTTCTACTGTCTTTGGGTGAGGTGGTCTGCGATGTCGATGTCCTCTGGCAATGGCGCAGGTTGCCAGTGGTGGTGGTATGGAATTCCATGGAGAAAGCTATGGGGTGCCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.03

Weight (kDa)

4.78

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
Acc36I ACCTGC 1 cut(s) 153
AccB1I GGYRCC 2 cut(s) 79, 210
AcsI RAATTY 1 cut(s) 187
AdeI CACNNNGTG 1 cut(s) 31
AgeI ACCGGT 1 cut(s) 82
AluBI AGCT 1 cut(s) 203
AluI AGCT 1 cut(s) 203
ApoI RAATTY 1 cut(s) 187
AsiGI ACCGGT 1 cut(s) 82
AspLEI GCGC 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 134
BaeGI GKGCMC 1 cut(s) 215
BanI GGYRCC 2 cut(s) 79, 210
BccI CCATC 1 cut(s) 88
BfuAI ACCTGC 1 cut(s) 153
BmiI GGNNCC 2 cut(s) 81, 212
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 1 cut(s) 82
Bse118I RCCGGY 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 170
Bse3DI GCAATG 1 cut(s) 161
BseDI CCNNGG 1 cut(s) 192
BseMI GCAATG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 215
BseYI CCCAGC 1 cut(s) 67
Bsh1285I CGRYCG 1 cut(s) 45
BshNI GGYRCC 2 cut(s) 79, 210
BshTI ACCGGT 1 cut(s) 82
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 1 cut(s) 83
BslFI GGGAC 1 cut(s) 36
BsmFI GGGAC 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 215
Bsp19I CCATGG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 81, 212
BspMI ACCTGC 1 cut(s) 153
BspT107I GGYRCC 2 cut(s) 79, 210
BsrDI GCAATG 1 cut(s) 161
BsrFI RCCGGY 1 cut(s) 82
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 82
BssECI CCNNGG 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 192
Bst4CI ACNGT 2 cut(s) 43, 114
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 216
BstDSI CCRYGG 1 cut(s) 192
BstHHI GCGC 1 cut(s) 162
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 3 cut(s) 68, 77, 166
BstSLI GKGCMC 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 82
CspAI ACCGGT 1 cut(s) 82
CviAII CATG 1 cut(s) 193
CviJI RGCY 1 cut(s) 203
CviKI_1 RGCY 1 cut(s) 203
DdeI CTNAG 1 cut(s) 216
DraIII CACNNNGTG 1 cut(s) 31
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 192
EcoRI GAATTC 1 cut(s) 187
EcoT14I CCWWGG 1 cut(s) 192
ErhI CCWWGG 1 cut(s) 192
FaeI CATG 1 cut(s) 196
FaiI YATR 3 cut(s) 184, 194, 206
FaqI GGGAC 1 cut(s) 36
FatI CATG 1 cut(s) 192
GlaI GCGC 1 cut(s) 161
GsaI CCCAGC 1 cut(s) 71
HapII CCGG 1 cut(s) 83
HhaI GCGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HpaII CCGG 1 cut(s) 83
HphI GGTGA 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 50
HpyCH4III ACNGT 2 cut(s) 43, 114
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 77, 166
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 160
LpnPI CCDG 5 cut(s) 81, 96, 136, 148, 183
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 1 cut(s) 187
MnlI CCTC 3 cut(s) 70, 118, 158
MspI CCGG 1 cut(s) 83
MwoI GCNNNNNNNGC 3 cut(s) 68, 77, 166
NcoI CCATGG 1 cut(s) 192
NlaIII CATG 1 cut(s) 196
NlaIV GGNNCC 2 cut(s) 81, 212
PinAI ACCGGT 1 cut(s) 82
PspFI CCCAGC 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 81, 212
SduI GDGCHC 1 cut(s) 215
SetI ASST 3 cut(s) 129, 167, 205
SgrAI CRCCGGYG 1 cut(s) 82
Sse9I AATT 1 cut(s) 187
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 2 cut(s) 43, 114
TaqI TCGA 1 cut(s) 141
TasI AATT 1 cut(s) 187
TscAI CASTG 1 cut(s) 177
TspRI CASTG 1 cut(s) 177
XapI RAATTY 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.