Rh1BG061900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001117
Physical Location & Seq
Forward (+)
9178512 .. 9178955
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG061900.1

Sequence Viewer

Length: 444 bp
ATGGATTGGCTAGGTTTATTTGACTGCGGTGGTGGGTTGAGGTGTGGTACCTCTGTCGGTGTTGCTTTTGGGGCAACACATGTTTCTAGGTGGAGCCTAGATCCGAAATCTTTGACAGATCTGAGGTTTTGTAATAGGCGTTACTGGGAATTTCTTCTTGAGAATATTGAAGATCCTGGTGCGTTGGGTCTTGCCAGCAGCGATTGTGATCAGTCCTTGGGATCTTGGGCTAATCCTGATGACTGGGTTAACACGAGAAGAGAATGGCCAGTTCTAATGGTCGGCTACTGGCTTCGATCAAATTTGTGGAGTTGCTATGCAGCGATGACATACGACGGAGGAGGTGGTGATCTGGAATTTGGTGGTTGCAGACCGGCGGACAAGGATGATCGCGTGGCTCTACCGTCTTTGGGCGAGGTGGTCTGTGATGTTGAAGTCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.25

Weight (kDa)

4.35

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 47
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 1 cut(s) 393
AciI CCGC 2 cut(s) 27, 377
AclWI GGATC 3 cut(s) 95, 167, 229
AcoI YGGCCR 1 cut(s) 266
AcsI RAATTY 3 cut(s) 149, 301, 356
AfaI GTAC 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 410
AflIII ACRYGT 1 cut(s) 79
AgsI TTSAA 2 cut(s) 170, 434
AjnI CCWGG 1 cut(s) 175
AlwI GGATC 3 cut(s) 95, 167, 229
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 2 cut(s) 198, 320
ApoI RAATTY 3 cut(s) 149, 301, 356
Asp700I GAANNNNTTC 1 cut(s) 153
Asp718I GGTACC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 359
BaeI ACNNNNGTAYC 2 cut(s) 39, 72
BalI TGGCCA 1 cut(s) 268
BanI GGYRCC 1 cut(s) 47
BauI CACGAG 1 cut(s) 253
BbvI GCAGC 2 cut(s) 210, 332
BciT130I CCWGG 1 cut(s) 177
BclI TGATCA 1 cut(s) 208
BfaI CTAG 4 cut(s) 11, 87, 98, 442
BglII AGATCT 1 cut(s) 118
BisI GCNGC 2 cut(s) 199, 321
BlsI GCNGC 2 cut(s) 200, 322
Bme1390I CCNGG 1 cut(s) 177
BmiI GGNNCC 2 cut(s) 49, 95
BmrFI CCNGG 1 cut(s) 177
BmrI ACTGGG 2 cut(s) 154, 253
BmuI ACTGGG 2 cut(s) 154, 253
BpuEI CTTGAG 1 cut(s) 179
BsaBI GATNNNNATC 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 410
Bse118I RCCGGY 1 cut(s) 373
Bse1I ACTGG 4 cut(s) 149, 248, 269, 293
Bse8I GATNNNNATC 1 cut(s) 207
BseBI CCWGG 1 cut(s) 177
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 1 cut(s) 391
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 410
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 4 cut(s) 149, 248, 269, 293
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 2 cut(s) 210, 332
Bsh1236I CGCG 1 cut(s) 393
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 47
BsiSI CCGG 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 410
BsnI GGCC 1 cut(s) 268
Bsp143I GATC 8 cut(s) 100, 118, 172, 208, 221, 296, 349, 388
BspACI CCGC 2 cut(s) 27, 377
BspANI GGCC 1 cut(s) 268
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 1 cut(s) 393
BspLI GGNNCC 2 cut(s) 49, 95
BspPI GGATC 3 cut(s) 95, 167, 229
BspT107I GGYRCC 1 cut(s) 47
BsrFI RCCGGY 1 cut(s) 373
BsrI ACTGG 4 cut(s) 149, 248, 269, 293
BssAI RCCGGY 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 8 cut(s) 100, 118, 172, 208, 221, 296, 349, 388
BssSI CACGAG 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 177
Bst4CI ACNGT 1 cut(s) 405
Bst6I CTCTTC 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 1 cut(s) 391
BstFNI CGCG 1 cut(s) 393
BstKTI GATC 8 cut(s) 103, 121, 175, 211, 224, 299, 352, 391
BstMBI GATC 8 cut(s) 100, 118, 172, 208, 221, 296, 349, 388
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 177
BstNSI RCATGY 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 175
BstUI CGCG 1 cut(s) 393
BstV1I GCAGC 2 cut(s) 210, 332
BstX2I RGATCY 4 cut(s) 100, 118, 172, 221
BstYI RGATCY 4 cut(s) 100, 118, 172, 221
BsuRI GGCC 1 cut(s) 268
BtgZI GCGATG 1 cut(s) 338
BtsCI GGATG 1 cut(s) 391
Cac8I GCNNGC 1 cut(s) 196
Cfr10I RCCGGY 1 cut(s) 373
Csp6I GTAC 1 cut(s) 48
CviAII CATG 1 cut(s) 80
CviJI RGCY 7 cut(s) 10, 96, 230, 268, 285, 292, 398
CviKI_1 RGCY 7 cut(s) 10, 96, 230, 268, 285, 292, 398
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 1 cut(s) 122
DpnI GATC 8 cut(s) 102, 120, 174, 210, 223, 298, 351, 390
DpnII GATC 8 cut(s) 100, 118, 172, 208, 221, 296, 349, 388
EaeI YGGCCR 1 cut(s) 266
Eam1104I CTCTTC 1 cut(s) 253
EarI CTCTTC 1 cut(s) 253
EciI GGCGGA 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 216
EcoRII CCWGG 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 1 cut(s) 83
FaiI YATR 3 cut(s) 81, 318, 331
FatI CATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 199, 321
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 2 cut(s) 199, 321
FspBI CTAG 4 cut(s) 11, 87, 98, 442
GluI GCNGC 2 cut(s) 199, 321
HaeIII GGCC 1 cut(s) 268
HapII CCGG 1 cut(s) 374
Hin1II CATG 1 cut(s) 83
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 1 cut(s) 374
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 105, 123
Hpy188III TCNNGA 3 cut(s) 158, 236, 353
Hpy8I GTNNAC 1 cut(s) 250
Hpy99I CGWCG 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 405
HpyCH4V TGCA 2 cut(s) 320, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 1 cut(s) 83
KpnI GGTACC 1 cut(s) 51
Ksp22I TGATCA 1 cut(s) 208
KspAI GTTAAC 1 cut(s) 250
Kzo9I GATC 8 cut(s) 100, 118, 172, 208, 221, 296, 349, 388
LmnI GCTCC 1 cut(s) 93
Lsp1109I GCAGC 2 cut(s) 210, 332
MaeI CTAG 4 cut(s) 11, 87, 98, 442
MaeIII GTNAC 1 cut(s) 140
MalI GATC 8 cut(s) 102, 120, 174, 210, 223, 298, 351, 390
MboI GATC 8 cut(s) 100, 118, 172, 208, 221, 296, 349, 388
MboII GAAGA 3 cut(s) 146, 182, 270
MflI RGATCY 4 cut(s) 100, 118, 172, 221
MlsI TGGCCA 1 cut(s) 268
MluCI AATT 3 cut(s) 149, 301, 356
MluNI TGGCCA 1 cut(s) 268
MnlI CCTC 6 cut(s) 33, 61, 117, 332, 335, 409
Mox20I TGGCCA 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 153
MscI TGGCCA 1 cut(s) 268
MseI TTAA 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 268
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 1 cut(s) 177
MvaI CCWGG 1 cut(s) 177
MvnI CGCG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 8 cut(s) 100, 118, 172, 208, 221, 296, 349, 388
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 2 cut(s) 49, 95
NspI RCATGY 1 cut(s) 83
PciI ACATGT 1 cut(s) 79
PdmI GAANNNNTTC 1 cut(s) 153
PkrI GCNGC 2 cut(s) 200, 322
PscI ACATGT 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 175
PspGI CCWGG 1 cut(s) 175
PspN4I GGNNCC 2 cut(s) 49, 95
PsuI RGATCY 4 cut(s) 100, 118, 172, 221
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 2 cut(s) 199, 321
Sau3AI GATC 8 cut(s) 100, 118, 172, 208, 221, 296, 349, 388
ScrFI CCNGG 1 cut(s) 177
SetI ASST 7 cut(s) 16, 44, 53, 92, 128, 346, 420
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 3 cut(s) 149, 301, 356
SsiI CCGC 2 cut(s) 27, 377
SspI AATATT 1 cut(s) 166
SspMI CTAG 4 cut(s) 11, 87, 98, 442
StyD4I CCNGG 1 cut(s) 175
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 405
TaqI TCGA 1 cut(s) 295
TasI AATT 3 cut(s) 149, 301, 356
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 2 cut(s) 198, 320
TspGWI ACGGA 1 cut(s) 351
XapI RAATTY 3 cut(s) 149, 301, 356
XceI RCATGY 1 cut(s) 83
XmnI GAANNNNTTC 1 cut(s) 153
XspI CTAG 4 cut(s) 11, 87, 98, 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.