Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Forward (+)

40035937 .. 40036278

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG347600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTGAAGAACGATGTGGTCAGGTTTAGAGGTGGACGGACTAGTGTTGGGGTGATTGCCGCAATTGTACTATTCTATTTAGACCTGTGTTCGTTGGATAGGTTAACTGCAGGGAAGGGCTGCTTCAGTAGGATCTATGCTGGTGCTATGCGGCGGCAACGTATCGGGGAGGAGGTGGTGATCTGGAATTTGGTAGTTGTAGACCGGTGGACAAGGATGGTCACGATGGTTCTACTGTCGTTGGGCGAGGTGGTCTGCGATGTCAATGTCCTCTGGCAGCGGCGCAGGTTGTCGGTGGTGTTGATTTGGAATTCCATGGAGAAAGCTATGGGGTGCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.83

Weight (kDa)

9.93

Isoelectric Point (pI)

38.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	276
AccB1I	GGYRCC	1 cut(s)	333
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	4 cut(s)	60, 151, 154, 280
AclWI	GGATC	1 cut(s)	140
AcsI	RAATTY	2 cut(s)	187, 310
AcuI	CTGAAG	1 cut(s)	109
AfaI	GTAC	1 cut(s)	69
AgeI	ACCGGT	1 cut(s)	204
AhlI	ACTAGT	1 cut(s)	41
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
AlwI	GGATC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	120, 277
ApoI	RAATTY	2 cut(s)	187, 310
AsiGI	ACCGGT	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	285
AsuHPI	GGTGA	3 cut(s)	16, 64, 190
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	107, 289
BccI	CCATC	2 cut(s)	211, 220
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	1 cut(s)	42
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	276
BisI	GCNGC	6 cut(s)	60, 121, 152, 155, 278, 281
BlsI	GCNGC	6 cut(s)	61, 122, 153, 156, 279, 282
BmiI	GGNNCC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	204
Bse118I	RCCGGY	1 cut(s)	204
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	1 cut(s)	222
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	2 cut(s)	107, 289
BshNI	GGYRCC	1 cut(s)	333
BshTI	ACCGGT	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	132, 180
Bsp19I	CCATGG	1 cut(s)	315
BspACI	CCGC	4 cut(s)	60, 151, 154, 280
BspLI	GGNNCC	1 cut(s)	335
BspMAI	CTGCAG	1 cut(s)	112
BspMI	ACCTGC	1 cut(s)	276
BspPI	GGATC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	333
BsrFI	RCCGGY	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	204
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	2 cut(s)	132, 180
BssT1I	CCWWGG	1 cut(s)	315
Bst4CI	ACNGT	1 cut(s)	237
BstDSI	CCRYGG	1 cut(s)	315
BstF5I	GGATG	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	135, 183
BstMBI	GATC	2 cut(s)	132, 180
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	2 cut(s)	107, 289
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	222
BveI	ACCTGC	1 cut(s)	276
CfoI	GCGC	1 cut(s)	285
Cfr10I	RCCGGY	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	68
CspAI	ACCGGT	1 cut(s)	204
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	2 cut(s)	120, 326
CviKI_1	RGCY	2 cut(s)	120, 326
CviQI	GTAC	1 cut(s)	68
DpnI	GATC	2 cut(s)	134, 182
DpnII	GATC	2 cut(s)	132, 180
Eco130I	CCWWGG	1 cut(s)	315
Eco57I	CTGAAG	1 cut(s)	109
EcoRI	GAATTC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	319
FaiI	YATR	4 cut(s)	138, 149, 317, 329
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FatI	CATG	1 cut(s)	315
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	6 cut(s)	60, 121, 152, 155, 278, 281
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	6 cut(s)	60, 121, 152, 155, 278, 281
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	6 cut(s)	60, 121, 152, 155, 278, 281
HapII	CCGG	1 cut(s)	205
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	319
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HpaI	GTTAAC	1 cut(s)	105
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	3 cut(s)	16, 64, 190
Hpy166II	GTNNAC	4 cut(s)	35, 105, 202, 210
Hpy188III	TCNNGA	2 cut(s)	184, 223
Hpy8I	GTNNAC	4 cut(s)	35, 105, 202, 210
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	110
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	319
HspAI	GCGC	1 cut(s)	283
KspAI	GTTAAC	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	132, 180
LpnPI	CCDG	8 cut(s)	7, 96, 98, 126, 169, 218, 259, 271
Lsp1109I	GCAGC	2 cut(s)	107, 289
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	160
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	2 cut(s)	134, 182
MboI	GATC	2 cut(s)	132, 180
MboII	GAAGA	1 cut(s)	19
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	3 cut(s)	63, 187, 310
MmeI	TCCRAC	1 cut(s)	75
MnlI	CCTC	5 cut(s)	23, 163, 166, 241, 281
MseI	TTAA	2 cut(s)	104, 340
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	1 cut(s)	205
MunI	CAATTG	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	315
NdeII	GATC	2 cut(s)	132, 180
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	220
PinAI	ACCGGT	1 cut(s)	204
PkrI	GCNGC	6 cut(s)	61, 122, 153, 156, 279, 282
PspN4I	GGNNCC	1 cut(s)	335
PstI	CTGCAG	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	1 cut(s)	69
RsaNI	GTAC	1 cut(s)	68
SaqAI	TTAA	2 cut(s)	104, 340
SatI	GCNGC	6 cut(s)	60, 121, 152, 155, 278, 281
Sau3AI	GATC	2 cut(s)	132, 180
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	9 cut(s)	26, 34, 87, 104, 163, 177, 252, 290, 328
SfcI	CTRYAG	1 cut(s)	108
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	3 cut(s)	63, 187, 310
SsiI	CCGC	4 cut(s)	60, 151, 154, 280
SspMI	CTAG	1 cut(s)	42
StyI	CCWWGG	1 cut(s)	315
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	1 cut(s)	163
TasI	AATT	3 cut(s)	63, 187, 310
TatI	WGTACW	1 cut(s)	67
TauI	GCSGC	4 cut(s)	62, 154, 157, 283
Tru1I	TTAA	2 cut(s)	104, 340
Tru9I	TTAA	2 cut(s)	104, 340
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	2 cut(s)	120, 277
Tsp45I	GTSAC	1 cut(s)	220
TspGWI	ACGGA	1 cut(s)	52
XapI	RAATTY	2 cut(s)	187, 310
XmiI	GTMKAC	1 cut(s)	201
XspI	CTAG	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.