Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Forward (+)

30663908 .. 30665046

Gene Structure 1139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG281400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTCCAGAATATTCTCCGTCGCGTACATGCTCGTCGGCCTCGTCGTCCTCTTGATCATCTTCTTCTATGCCCAAAAGTTCGATGCCTACGTCCGGATCAGCGTGGGCCTGGGCTTGTTTATGGTGTTGCTGCTCATCGTCCCGGTGCTGCACTTGGTCTACATCCAGGGCTGGGTCGGGTTGTACGCCAGGTTTTACTTCACAGTTGCGGCCGTTGCACTTTCGGGTCTGGCTGATGCACTGGTGGAAGGCTTGCTAATCGGTGCGGCCGGTGAGTTGCCTGAGAAGTATATGCGAGCCATTGTAGCAGGCACTGCTGATTCAGGTAACAACAAAGCTGATTTTCTTGGGTCTAGTTATTTTGCTTTCAATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nucleoside_tran

Protein Analysis

125

Amino Acids

13.58

Weight (kDa)

6.53

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nucleoside_tran	PF01733	70 - 109	3.8e-06	Nucleoside transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AccII	CGCG	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	93
AciI	CCGC	2 cut(s)	209, 266
AclWI	GGATC	1 cut(s)	104
AcoI	YGGCCR	2 cut(s)	210, 267
AfaI	GTAC	2 cut(s)	26, 185
AfiI	CCNNNNNNNGG	2 cut(s)	93, 172
AgsI	TTSAA	1 cut(s)	370
AjnI	CCWGG	3 cut(s)	108, 165, 188
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
AlwI	GGATC	1 cut(s)	104
AlwNI	CAGNNNCTG	1 cut(s)	314
Aor13HI	TCCGGA	1 cut(s)	93
AoxI	GGCC	4 cut(s)	37, 106, 210, 267
ApeKI	GCWGC	2 cut(s)	130, 148
AspS9I	GGNCC	1 cut(s)	106
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	117, 135
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	3 cut(s)	110, 167, 190
BclI	TGATCA	1 cut(s)	54
BcnI	CCSGG	1 cut(s)	143
BfaI	CTAG	1 cut(s)	354
BisI	GCNGC	4 cut(s)	131, 149, 210, 267
BlsI	GCNGC	4 cut(s)	132, 150, 211, 268
Bme1390I	CCNGG	4 cut(s)	110, 143, 167, 190
BmgT120I	GGNCC	1 cut(s)	106
BmrFI	CCNGG	4 cut(s)	110, 143, 167, 190
BmsI	GCATC	2 cut(s)	73, 226
BpuMI	CCSGG	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	109, 166
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	93, 172
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	93
BseBI	CCWGG	3 cut(s)	110, 167, 190
BseDI	CCNNGG	2 cut(s)	109, 166
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	2 cut(s)	93, 172
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	1 cut(s)	246
BseX3I	CGGCCG	2 cut(s)	210, 267
BseXI	GCAGC	2 cut(s)	117, 135
BseYI	CCCAGC	1 cut(s)	171
BsgI	GTGCAG	1 cut(s)	134
Bsh1236I	CGCG	1 cut(s)	23
Bsh1285I	CGRYCG	2 cut(s)	213, 270
BshFI	GGCC	4 cut(s)	39, 108, 212, 269
BsiEI	CGRYCG	2 cut(s)	213, 270
BsiSI	CCGG	3 cut(s)	94, 143, 270
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	93, 172
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	4 cut(s)	39, 108, 212, 269
Bsp13I	TCCGGA	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	54, 96
BspACI	CCGC	2 cut(s)	209, 266
BspANI	GGCC	4 cut(s)	39, 108, 212, 269
BspCNI	CTCAG	1 cut(s)	274
BspEI	TCCGGA	1 cut(s)	93
BspFNI	CGCG	1 cut(s)	23
BspPI	GGATC	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	2 cut(s)	109, 166
BssMI	GATC	2 cut(s)	54, 96
Bst2UI	CCWGG	3 cut(s)	110, 167, 190
Bst4CI	ACNGT	1 cut(s)	205
BstAPI	GCANNNNNTGC	1 cut(s)	314
BstC8I	GCNNGC	3 cut(s)	254, 297, 310
BstDEI	CTNAG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	23
BstKTI	GATC	2 cut(s)	57, 99
BstMBI	GATC	2 cut(s)	54, 96
BstMCI	CGRYCG	2 cut(s)	213, 270
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 305, 314
BstNI	CCWGG	3 cut(s)	110, 167, 190
BstNSI	RCATGY	1 cut(s)	31
BstSCI	CCNGG	4 cut(s)	108, 141, 165, 188
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	2 cut(s)	117, 135
BstZI	CGGCCG	2 cut(s)	210, 267
BsuRI	GGCC	4 cut(s)	39, 108, 212, 269
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	2 cut(s)	239, 312
Cac8I	GCNNGC	3 cut(s)	254, 297, 310
CaiI	CAGNNNCTG	1 cut(s)	314
Cfr10I	RCCGGY	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	2 cut(s)	25, 184
CviAII	CATG	1 cut(s)	28
CviQI	GTAC	2 cut(s)	25, 184
DdeI	CTNAG	1 cut(s)	282
DpnI	GATC	2 cut(s)	56, 98
DpnII	GATC	2 cut(s)	54, 96
EaeI	YGGCCR	2 cut(s)	210, 267
EagI	CGGCCG	2 cut(s)	210, 267
EclXI	CGGCCG	2 cut(s)	210, 267
Eco52I	CGGCCG	2 cut(s)	210, 267
EcoRII	CCWGG	3 cut(s)	108, 165, 188
FaeI	CATG	1 cut(s)	31
FaiI	YATR	6 cut(s)	29, 69, 122, 291, 293, 376
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	1 cut(s)	27
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	4 cut(s)	131, 149, 210, 267
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	4 cut(s)	131, 149, 210, 267
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	4 cut(s)	131, 149, 210, 267
GsaI	CCCAGC	1 cut(s)	175
HaeIII	GGCC	4 cut(s)	39, 108, 212, 269
HapII	CCGG	3 cut(s)	94, 143, 270
Hin1II	CATG	1 cut(s)	31
HinfI	GANTC	1 cut(s)	320
HpaII	CCGG	3 cut(s)	94, 143, 270
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188III	TCNNGA	3 cut(s)	6, 52, 94
Hpy8I	GTNNAC	1 cut(s)	160
Hpy99I	CGWCG	3 cut(s)	23, 38, 47
HpyAV	CCTTC	1 cut(s)	242
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	3 cut(s)	151, 218, 239
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 305, 314
HpyF3I	CTNAG	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	54, 96
Lsp1109I	GCAGC	2 cut(s)	117, 135
LweI	GCATC	2 cut(s)	73, 226
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	2 cut(s)	56, 98
MboI	GATC	2 cut(s)	54, 96
MboII	GAAGA	2 cut(s)	52, 55
MnlI	CCTC	2 cut(s)	50, 59
MroI	TCCGGA	1 cut(s)	93
MspI	CCGG	3 cut(s)	94, 143, 270
MspR9I	CCNGG	4 cut(s)	110, 143, 167, 190
MvaI	CCWGG	3 cut(s)	110, 167, 190
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	3 cut(s)	215, 305, 314
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	54, 96
NlaIII	CATG	1 cut(s)	31
NspI	RCATGY	1 cut(s)	31
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 42, 87
PfeI	GAWTC	1 cut(s)	320
PkrI	GCNGC	4 cut(s)	132, 150, 211, 268
Psp6I	CCWGG	3 cut(s)	108, 165, 188
PspFI	CCCAGC	1 cut(s)	171
PspGI	CCWGG	3 cut(s)	108, 165, 188
PspPI	GGNCC	1 cut(s)	106
PstNI	CAGNNNCTG	1 cut(s)	314
RsaI	GTAC	2 cut(s)	26, 185
RsaNI	GTAC	2 cut(s)	25, 184
SatI	GCNGC	4 cut(s)	131, 149, 210, 267
Sau3AI	GATC	2 cut(s)	54, 96
Sau96I	GGNCC	1 cut(s)	106
ScrFI	CCNGG	4 cut(s)	110, 143, 167, 190
SetI	ASST	4 cut(s)	93, 194, 328, 340
SfaNI	GCATC	2 cut(s)	73, 226
SsiI	CCGC	2 cut(s)	209, 266
SspI	AATATT	1 cut(s)	12
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	4 cut(s)	108, 141, 165, 188
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	81
TauI	GCSGC	2 cut(s)	212, 269
TfiI	GAWTC	1 cut(s)	320
TscAI	CASTG	2 cut(s)	246, 319
TseI	GCWGC	2 cut(s)	130, 148
TspGWI	ACGGA	1 cut(s)	7
TspRI	CASTG	2 cut(s)	246, 319
XceI	RCATGY	1 cut(s)	31
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.