Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001117

Physical Location & Seq

Genomic Coordinates Reverse (-)

18081591 .. 18083187

Gene Structure 1597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17923

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGTTCATGTTCTCTGGTGTAACTCCACCTTCAAGCTTCCAAACAAAGGAATGGATAAGAGAACCCAACATTAAGTGCAACATTCTGATTGCCAATGGTAAGCCCGGACATATTCTCCTGCCGGCGCCAAATGGAATAAGTTCAAAATTCCGGCCTCTAACATCAAGTTCAGACCCCAAAAATCTCTCCGGCTTGAATGAATCCGGGTCGTCCCATATACTTGGGTCTCTGCCAATGGCCCATGCGTTAACAAGCACTTGTGCACCCTTTGGGACTGTGGAGCCTTCAATTTCTACATCTGATTCGGCTTTTCGGGGAAGTAGCAAAGGAACTGCAGGGTGCATACGAAATGTTTCTTTAATAATGGCTTGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.09

Weight (kDa)

9.34

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001117)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g33571
pyrus_communis	pycom16g09810
rosa_chinensis	RchiOBHm_Chr1g0342871 RchiOBHm_Chr5g0035751 RchiOBHm_Chr7g0200261
rosa_laevigata	RLG00000002566 RLG00000002750 RLG00000005499 RLG00000005544 RLG00000006899 RLG00000009955 RLG00000011110 RLG00000011381 RLG00000012166 RLG00000015781 RLG00000016273 RLG00000016602 RLG00000018601 RLG00000021025 RLG00000021028 RLG00000021031 RLG00000022208 RLG00000023343 RLG00000023545 RLG00000024435 RLG00000028457 RLG00000032312 RLG00000034034 RLG00000034457
rosa_multiflora	Rmu_sc0002441.1_g000009
rosa_roxburghii	Rroxscaffold_1G00017960 Rroxscaffold_1G00044280 Rroxscaffold_1G00046100 Rroxscaffold_1G00051490 Rroxscaffold_2G00082940
rosa_rugosa	Rorug01G0035400 Rorug04G0010800 Rorug07G0110900
rosa_samantha	Rh1AG075900 Rh1BG061900 Rh1CG074200 Rh1DG081500 Rh3BG283500 Rh3DG277200 Rh4AG072400 Rh4AG073200 Rh4AG074500 Rh4AG228000 Rh4BG070400 Rh5CG281400 Rh5CG347600 Rh6BG298400 Rh6BG388000 Rh6BG412300 Rh6CG298700 Rh6DG290700 Rh6DG405200 Rh6DG418000 Rh7AG475800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	146
AcyI	GRCGYC	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	46
AgsI	TTSAA	4 cut(s)	33, 144, 196, 288
AluBI	AGCT	1 cut(s)	36
AluI	AGCT	1 cut(s)	36
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	231
Alw44I	GTGCAC	1 cut(s)	261
AoxI	GGCC	2 cut(s)	152, 237
ApaLI	GTGCAC	1 cut(s)	261
ApoI	RAATTY	1 cut(s)	146
Asp700I	GAANNNNTTC	2 cut(s)	139, 352
AspLEI	GCGC	1 cut(s)	127
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	2 cut(s)	105, 205
BaeGI	GKGCMC	1 cut(s)	265
BanI	GGYRCC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	265
BcnI	CCSGG	2 cut(s)	105, 205
BcoDI	GTCTC	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	333
BfoI	RGCGCY	1 cut(s)	128
Bme1390I	CCNGG	2 cut(s)	105, 205
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	2 cut(s)	126, 282
BmrFI	CCNGG	2 cut(s)	105, 205
BpuMI	CCSGG	2 cut(s)	105, 205
BsaHI	GRCGYC	1 cut(s)	125
BsaI	GGTCTC	1 cut(s)	231
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse118I	RCCGGY	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseSI	GKGCMC	1 cut(s)	265
BshFI	GGCC	2 cut(s)	154, 239
BshNI	GGYRCC	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	265
BsiSI	CCGG	5 cut(s)	105, 122, 151, 189, 204
BslFI	GGGAC	2 cut(s)	196, 286
BslI	CCNNNNNNNGG	1 cut(s)	46
BsmAI	GTCTC	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	196, 286
BsnI	GGCC	2 cut(s)	154, 239
Bso31I	GGTCTC	1 cut(s)	231
Bsp1286I	GDGCHC	1 cut(s)	265
BspANI	GGCC	2 cut(s)	154, 239
BspLI	GGNNCC	2 cut(s)	126, 282
BspMAI	CTGCAG	1 cut(s)	337
BspT107I	GGYRCC	1 cut(s)	124
BspTNI	GGTCTC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	121
BssNI	GRCGYC	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	277
BstACI	GRCGYC	1 cut(s)	125
BstC8I	GCNNGC	2 cut(s)	123, 370
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	231
BstSCI	CCNGG	2 cut(s)	103, 203
BstSFI	CTRYAG	1 cut(s)	333
BstSLI	GKGCMC	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	221
BsuRI	GGCC	2 cut(s)	154, 239
Cac8I	GCNNGC	2 cut(s)	123, 370
CfoI	GCGC	1 cut(s)	127
Cfr10I	RCCGGY	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	238
CviAII	CATG	2 cut(s)	7, 242
CviJI	RGCY	8 cut(s)	36, 103, 154, 192, 239, 283, 308, 368
CviKI_1	RGCY	8 cut(s)	36, 103, 154, 192, 239, 283, 308, 368
DinI	GGCGCC	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	231
EgeI	GGCGCC	1 cut(s)	126
EheI	GGCGCC	1 cut(s)	126
FaeI	CATG	2 cut(s)	10, 245
FaiI	YATR	6 cut(s)	8, 111, 216, 218, 243, 344
FaqI	GGGAC	2 cut(s)	196, 286
FatI	CATG	2 cut(s)	6, 241
GlaI	GCGC	1 cut(s)	126
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	154, 239
HapII	CCGG	5 cut(s)	105, 122, 151, 189, 204
HhaI	GCGC	1 cut(s)	127
Hin1I	GRCGYC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	10, 245
Hin6I	GCGC	1 cut(s)	125
HinP1I	GCGC	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HindIII	AAGCTT	1 cut(s)	34
HinfI	GANTC	2 cut(s)	200, 302
HpaI	GTTAAC	1 cut(s)	249
HpaII	CCGG	5 cut(s)	105, 122, 151, 189, 204
Hpy166II	GTNNAC	2 cut(s)	249, 263
Hpy188I	TCNGA	3 cut(s)	87, 172, 301
Hpy8I	GTNNAC	2 cut(s)	249, 263
HpyAV	CCTTC	2 cut(s)	39, 294
HpyCH4III	ACNGT	1 cut(s)	277
HpyCH4V	TGCA	5 cut(s)	78, 263, 335, 342, 372
Hsp92I	GRCGYC	1 cut(s)	125
Hsp92II	CATG	2 cut(s)	10, 245
HspAI	GCGC	1 cut(s)	125
KasI	GGCGCC	1 cut(s)	124
KroI	GCCGGC	1 cut(s)	121
KroNI	GCCGGC	1 cut(s)	123
KspAI	GTTAAC	1 cut(s)	249
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	7 cut(s)	118, 131, 135, 164, 202, 217, 321
MaeIII	GTNAC	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	265
MluCI	AATT	2 cut(s)	146, 288
Mly113I	GGCGCC	1 cut(s)	125
MnlI	CCTC	1 cut(s)	165
MroNI	GCCGGC	1 cut(s)	121
MroXI	GAANNNNTTC	2 cut(s)	139, 352
MseI	TTAA	3 cut(s)	72, 248, 359
MspI	CCGG	5 cut(s)	105, 122, 151, 189, 204
MspR9I	CCNGG	2 cut(s)	105, 205
NaeI	GCCGGC	1 cut(s)	123
NarI	GGCGCC	1 cut(s)	125
NciI	CCSGG	2 cut(s)	105, 205
NgoMIV	GCCGGC	1 cut(s)	121
NlaIII	CATG	2 cut(s)	10, 245
NlaIV	GGNNCC	2 cut(s)	126, 282
PdiI	GCCGGC	1 cut(s)	123
PdmI	GAANNNNTTC	2 cut(s)	139, 352
PfeI	GAWTC	2 cut(s)	200, 302
PluTI	GGCGCC	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	126, 282
PspPI	GGNCC	1 cut(s)	238
PstI	CTGCAG	1 cut(s)	337
SaqAI	TTAA	3 cut(s)	72, 248, 359
Sau96I	GGNCC	1 cut(s)	238
ScrFI	CCNGG	2 cut(s)	105, 205
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	2 cut(s)	31, 38
SfcI	CTRYAG	1 cut(s)	333
SfoI	GGCGCC	1 cut(s)	126
Sse9I	AATT	2 cut(s)	146, 288
SspDI	GGCGCC	1 cut(s)	124
StyD4I	CCNGG	2 cut(s)	103, 203
TaaI	ACNGT	1 cut(s)	277
TasI	AATT	2 cut(s)	146, 288
TfiI	GAWTC	2 cut(s)	200, 302
Tru1I	TTAA	3 cut(s)	72, 248, 359
Tru9I	TTAA	3 cut(s)	72, 248, 359
TspDTI	ATGAA	1 cut(s)	213
VneI	GTGCAC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	146
XmnI	GAANNNNTTC	2 cut(s)	139, 352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.