RLG00000023343

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
22305336 .. 22308789
3454 bp
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UTR
Exon/CDS
Intron
RLM00000023343

Sequence Viewer

Length: 516 bp
ATGTCGCAGGGGTGTCGGCAGGGGCCTCGGCAGACGTCGGCAGCTATCGGCAGGTGTATGCAGGGCTGTCGGCAGCTTCTCGGCAGGGGCCTCGGCAGGTGTCGGCAGGTGCTAGGCAGCTATCGGCAGGTGCTCGGCAGGTGTCGACAGGTCTCGGCAGGTGCTCGGCAGGTCTCGGCAGGTGCTCGGCAGGTCTCGGCAGATGCTCGGCAGGTGTCGGCAGGTGCTCGGCAGGTGTCGGGCAGGTGTCGGCAGGTGTCGGCAGGTGTCGGCAGGTCTCGGCAGATGCTCGGCAGGTGTCGGCAGGTGTCGGCAGGTGTCGGCAGCTCTCTAATGGCTTTCGACCGGGGCTTCTTGGATTGGATTTGGTTGCTACCAGGTGGTAATGGTATTGGCAGCGGTAATCTCAAAATGGTGAAGAATGGGTTCAGAGGTGGACATACTGGTGTTGGGGTGATTGCCGACAACTGTACTGTTCTATTTCGATTTGTGTTTGTTGGAGAGGTTGATGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

18.06

Weight (kDa)

11.65

Isoelectric Point (pI)

24.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 145
AciI CCGC 1 cut(s) 399
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 1 cut(s) 472
AjnI CCWGG 1 cut(s) 376
AluBI AGCT 4 cut(s) 44, 76, 120, 327
AluI AGCT 4 cut(s) 44, 76, 120, 327
Alw21I GWGCWC 4 cut(s) 135, 166, 187, 229
Alw26I GTCTC 4 cut(s) 157, 178, 199, 282
AoxI GGCC 2 cut(s) 23, 88
ApeKI GCWGC 5 cut(s) 41, 73, 117, 324, 396
Asp700I GAANNNNTTC 1 cut(s) 425
AspS9I GGNCC 2 cut(s) 23, 88
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 427, 466
Bbv12I GWGCWC 4 cut(s) 135, 166, 187, 229
BbvI GCAGC 5 cut(s) 53, 85, 129, 336, 408
BccI CCATC 1 cut(s) 503
BcgI CGANNNNNNTGC 7 cut(s) 8, 30, 42, 50, 73, 84, 107
BciT130I CCWGG 1 cut(s) 378
BcnI CCSGG 1 cut(s) 347
BcoDI GTCTC 4 cut(s) 157, 178, 199, 282
BfaI CTAG 2 cut(s) 113, 514
BisI GCNGC 5 cut(s) 42, 74, 118, 325, 397
BlsI GCNGC 5 cut(s) 43, 75, 119, 326, 398
Bme1390I CCNGG 2 cut(s) 347, 378
BmgT120I GGNCC 2 cut(s) 23, 88
BmiI GGNNCC 2 cut(s) 24, 89
BmrFI CCNGG 2 cut(s) 347, 378
BmsI GCATC 2 cut(s) 193, 276
BpuMI CCSGG 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 4 cut(s) 157, 178, 199, 282
BsaJI CCNNGG 3 cut(s) 26, 91, 346
Bse1I ACTGG 1 cut(s) 448
BseBI CCWGG 1 cut(s) 378
BseDI CCNNGG 3 cut(s) 26, 91, 346
BseNI ACTGG 1 cut(s) 448
BseXI GCAGC 5 cut(s) 53, 85, 129, 336, 408
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 2 cut(s) 25, 90
BsiEI CGRYCG 1 cut(s) 346
BsiHKAI GWGCWC 4 cut(s) 135, 166, 187, 229
BsiSI CCGG 1 cut(s) 346
BsmAI GTCTC 4 cut(s) 157, 178, 199, 282
BsnI GGCC 2 cut(s) 25, 90
Bso31I GGTCTC 4 cut(s) 157, 178, 199, 282
Bsp1286I GDGCHC 4 cut(s) 135, 166, 187, 229
BspACI CCGC 1 cut(s) 399
BspANI GGCC 2 cut(s) 25, 90
BspLI GGNNCC 2 cut(s) 24, 89
BspTNI GGTCTC 4 cut(s) 157, 178, 199, 282
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 3 cut(s) 26, 91, 346
BssNI GRCGYC 1 cut(s) 35
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 470, 475
BstACI GRCGYC 1 cut(s) 35
BstMAI GTCTC 4 cut(s) 157, 178, 199, 282
BstMCI CGRYCG 1 cut(s) 346
BstNI CCWGG 1 cut(s) 378
BstSCI CCNGG 2 cut(s) 345, 376
BstV1I GCAGC 5 cut(s) 53, 85, 129, 336, 408
BsuRI GGCC 2 cut(s) 25, 90
Cfr13I GGNCC 2 cut(s) 23, 88
CsiI ACCWGGT 1 cut(s) 376
Csp6I GTAC 1 cut(s) 471
CviQI GTAC 1 cut(s) 471
Eco31I GGTCTC 4 cut(s) 157, 178, 199, 282
EcoO109I RGGNCCY 2 cut(s) 23, 88
EcoRII CCWGG 1 cut(s) 376
FaiI YATR 2 cut(s) 59, 441
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 5 cut(s) 42, 74, 118, 325, 397
Fsp4HI GCNGC 5 cut(s) 42, 74, 118, 325, 397
FspBI CTAG 2 cut(s) 113, 514
GluI GCNGC 5 cut(s) 42, 74, 118, 325, 397
HaeIII GGCC 2 cut(s) 25, 90
HapII CCGG 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 146
HindII GTYRAC 1 cut(s) 146
HpaII CCGG 1 cut(s) 346
HphI GGTGA 2 cut(s) 427, 466
Hpy166II GTNNAC 2 cut(s) 146, 437
Hpy188I TCNGA 1 cut(s) 431
Hpy8I GTNNAC 2 cut(s) 146, 437
Hpy99I CGWCG 1 cut(s) 40
HpyCH4III ACNGT 2 cut(s) 470, 475
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 61
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 35
Lsp1109I GCAGC 5 cut(s) 53, 85, 129, 336, 408
LweI GCATC 2 cut(s) 193, 276
MabI ACCWGGT 1 cut(s) 376
MaeI CTAG 2 cut(s) 113, 514
MaeII ACGT 1 cut(s) 35
MboII GAAGA 1 cut(s) 430
MhlI GDGCHC 4 cut(s) 135, 166, 187, 229
MmeI TCCRAC 1 cut(s) 478
MnlI CCTC 4 cut(s) 36, 101, 425, 496
MroXI GAANNNNTTC 1 cut(s) 425
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 1 cut(s) 399
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 2 cut(s) 347, 378
MvaI CCWGG 1 cut(s) 378
NciI CCSGG 1 cut(s) 347
NlaIV GGNNCC 2 cut(s) 24, 89
PdmI GAANNNNTTC 1 cut(s) 425
PkrI GCNGC 5 cut(s) 43, 75, 119, 326, 398
Psp6I CCWGG 1 cut(s) 376
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 2 cut(s) 24, 89
PspPI GGNCC 2 cut(s) 23, 88
RsaI GTAC 1 cut(s) 472
RsaNI GTAC 1 cut(s) 471
RseI CAYNNNNRTG 1 cut(s) 444
SalI GTCGAC 1 cut(s) 144
SatI GCNGC 5 cut(s) 42, 74, 118, 325, 397
Sau96I GGNCC 2 cut(s) 23, 88
ScrFI CCNGG 2 cut(s) 347, 378
SduI GDGCHC 4 cut(s) 135, 166, 187, 229
SexAI ACCWGGT 1 cut(s) 376
SfaNI GCATC 2 cut(s) 193, 276
SmiMI CAYNNNNRTG 1 cut(s) 444
SsiI CCGC 1 cut(s) 399
SspMI CTAG 2 cut(s) 113, 514
StyD4I CCNGG 2 cut(s) 345, 376
TaaI ACNGT 2 cut(s) 470, 475
TaiI ACGT 1 cut(s) 38
TaqI TCGA 3 cut(s) 145, 342, 484
TatI WGTACW 1 cut(s) 470
TseI GCWGC 5 cut(s) 41, 73, 117, 324, 396
XmiI GTMKAC 1 cut(s) 145
XmnI GAANNNNTTC 1 cut(s) 425
XspI CTAG 2 cut(s) 113, 514
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.